PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1bqsA_

Fold library id	PDB Header	Molecule	Title
c1bqsA_	PDB header: membrane protein	Chain: A: PDB Molecule: protein (mucosal addressin cell adhesion	PDBTitle: the crystal structure of mucosal addressin cell adhesion2 molecule-1 (madcam-1)

Links to external resources
Added to library: Tue Mar 16 13:58:04 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K P L Q V E P P E P V V A V A L G A S R Q L T C R L A C A D R G A S V Q W R G L D T S L G A V Q S D T G R S V L T V R N A S L S A A G T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T
S S S
S S
S S S S S S
S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V C V G S C G G R T F Q H T V Q L L V Y A F P N Q L T V S P A A L V P G D P E V A C T A H K V T P V D P N A L S F S L L V G G Q E L E G A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B
S
S S S B
S
S B
S T T S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . .

Sequence A L G P E V Q E E E E E P Q G D E D V L F R V T E R W R L P P L G T P V P P A L Y C Q A T M R L P G L E L S H R Q A I P V L H S P T S P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
S T T B
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	P	L	Q	V	E	P	P	E	P	V	V	A	V	A	L	G	A	S	R	Q	L	T	C	R	L	A	C	A	D	R	G	A	S	V	Q	W	R	G	L	D	T	S	L	G	A	V	Q	S	D	T	G	R	S	V	L	T	V	R	N	A	S	L	S	A	A	G	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S					S			S						T	T												S	S	S								S	S			S	S						S	S	S	S							S			G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	C	V	G	S	C	G	G	R	T	F	Q	H	T	V	Q	L	L	V	Y	A	F	P	N	Q	L	T	V	S	P	A	A	L	V	P	G	D	P	E	V	A	C	T	A	H	K	V	T	P	V	D	P	N	A	L	S	F	S	L	L	V	G	G	Q	E	L	E	G	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T													B			S						S	S	S	B		S			S										B			S	T	T	S								T	T				T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Sequence	A	L	G	P	E	V	Q	E	E	E	E	E	P	Q	G	D	E	D	V	L	F	R	V	T	E	R	W	R	L	P	P	L	G	T	P	V	P	P	A	L	Y	C	Q	A	T	M	R	L	P	G	L	E	L	S	H	R	Q	A	I	P	V	L	H	S	P	T	S	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S	S																			S	S			S											T	T											B						S