Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	A	I	W	I	A	V	A	A	V	S	L	L	G	L	A	F	G	A	I	L	G	Y	A	S	R	R	F	A	V	E	D	D	P	V	V	E	K	I	D	E	I	L	P	Q	S	Q	C	G	Q	C	G	Y	P	G	C	R	P	Y
Secondary structure
SS confidence
Disorder		?	?	?																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	E	A	I	S	C	N	G	E	K	I	N	R	C	A	P	G	G	E	A	V	M	L	K	I	A	E	L	L	N	V	E	P	Q	P	L	D	G	E	A	Q	E	I	T	P	A	R	M	V	A	V	I	D	E	N	N	C	I	G	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	K	C	I	Q	A	C	P	V	D	A	I	V	G	A	T	R	A	M	H	T	V	M	S	D	L	C	T	G	C	N	L	C	V	D	P	C	P	T	H	C	I	S	L	Q	P	V	A	E	T	P	D	S	W	K	W	D	L	N	T
Secondary structure
SS confidence
Disorder																																																?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.
Sequence		I	P	V	R	I	I	P	V	E	H	H	A
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gth chain D Region: 85 - 170 Aligned: 86 Modelled: 86 Confidence: 99.8% Identity: 33% PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Phyre2 PDB 1gte chain A domain 5 Region: 85 - 170 Aligned: 86 Modelled: 86 Confidence: 99.6% Identity: 33% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2c3y chain A Region: 99 - 191 Aligned: 92 Modelled: 93 Confidence: 99.6% Identity: 27% PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus Phyre2 PDB 2gmh chain A Region: 65 - 166 Aligned: 102 Modelled: 102 Confidence: 99.6% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone Phyre2 PDB 3gyx chain J Region: 110 - 168 Aligned: 59 Modelled: 59 Confidence: 99.5% Identity: 29% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 1hfe chain L domain 2 Region: 90 - 164 Aligned: 75 Modelled: 75 Confidence: 99.5% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1jnr chain B Region: 110 - 166 Aligned: 57 Modelled: 57 Confidence: 99.5% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2ivf chain B Region: 111 - 168 Aligned: 58 Modelled: 58 Confidence: 99.5% Identity: 33% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 7fd1 chain A Region: 110 - 164 Aligned: 54 Modelled: 55 Confidence: 99.5% Identity: 35% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 2fug chain G Region: 113 - 166 Aligned: 54 Modelled: 54 Confidence: 99.5% Identity: 35% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 2fug chain 9 domain 1 Region: 113 - 166 Aligned: 54 Modelled: 54 Confidence: 99.5% Identity: 35% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2c42 chain A domain 5 Region: 99 - 182 Aligned: 83 Modelled: 84 Confidence: 99.5% Identity: 33% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1bc6 chain A Region: 110 - 164 Aligned: 54 Modelled: 55 Confidence: 99.5% Identity: 31% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1y5i chain B domain 1 Region: 70 - 164 Aligned: 95 Modelled: 95 Confidence: 99.4% Identity: 19% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fdn chain A Region: 110 - 164 Aligned: 54 Modelled: 55 Confidence: 99.4% Identity: 30% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2zvs chain B Region: 110 - 178 Aligned: 68 Modelled: 69 Confidence: 99.4% Identity: 29% PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli Phyre2 PDB 1xer chain A Region: 107 - 166 Aligned: 60 Modelled: 60 Confidence: 99.4% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 1dur chain A Region: 110 - 164 Aligned: 53 Modelled: 55 Confidence: 99.4% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1h98 chain A Region: 110 - 164 Aligned: 54 Modelled: 55 Confidence: 99.4% Identity: 28% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1fca chain A Region: 110 - 163 Aligned: 53 Modelled: 54 Confidence: 99.4% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1kqf chain B Region: 42 - 168 Aligned: 117 Modelled: 117 Confidence: 99.4% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 1 c1gthD_ 2 d1gtea5 3 c2c3yA_ 4 c2gmhA_ 5 c3gyxJ_ 6 d1hfel2 7 d1jnrb_ 8 c2ivfB_ 9 d7fd1a_ 10 c2fugG_ 11 d2fug91 12 d2c42a5 13 d1bc6a_ 14 d1y5ib1 15 d2fdna_ 16 c2zvsB_ 17 d1xera_ 18 d1dura_ 19 d1h98a_ 20 d1fcaa_ 21 22 23 c1kqfB_ 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1gthD_ 99.8 33 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 2 d1gtea5 99.6 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 3 c2c3yA_ 99.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 4 c2gmhA_ 99.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 5 c3gyxJ_ 99.5 29 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 6 d1hfel2 99.5 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 7 d1jnrb_ 99.5 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 8 c2ivfB_ 99.5 33 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 9 d7fd1a_ 99.5 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 10 c2fugG_ 99.5 35 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 11 d2fug91 99.5 35 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 12 d2c42a5 99.5 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 13 d1bc6a_ 99.5 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 14 d1y5ib1 99.4 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 15 d2fdna_ 99.4 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 16 c2zvsB_ 99.4 29 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 17 d1xera_ 99.4 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 18 d1dura_ 99.4 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 19 d1h98a_ 99.4 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 20 d1fcaa_ 99.4 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 21 d1blua_ not modelled 99.4 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 22 d1rgva_ not modelled 99.4 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 23 c1kqfB_ 99.4 21 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 24 d1jb0c_ not modelled 99.3 37 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 25 d1vlfn2 not modelled 99.3 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 26 c1gx7A_ not modelled 99.3 36 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 27 c2vpyB_ not modelled 99.3 25 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 28 d1clfa_ not modelled 99.3 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 29 c1hfeL_ not modelled 99.3 25 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 30 d2fug34 not modelled 99.3 13 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 31 d1kqfb1 not modelled 99.3 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 32 c1ti2F_ not modelled 99.2 14 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 33 c2v2kB_ not modelled 99.2 29 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 34 c2fgoA_ not modelled 99.2 29 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 35 d1iqza_ not modelled 99.2 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 36 d2gmha3 not modelled 99.2 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 37 c1c4cA_ not modelled 99.2 17 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 38 d3c8ya3 not modelled 99.2 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 39 c3bk7A_ not modelled 99.1 34 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 40 d1vjwa_ not modelled 99.1 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 41 d1h0hb_ not modelled 99.1 13 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 42 c2fugC_ not modelled 99.0 16 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 43 d3c7bb1 not modelled 99.0 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 44 c3c7bE_ not modelled 99.0 21 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 45 c1dwlA_ not modelled 98.9 29 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 46 d1sj1a_ not modelled 98.9 19 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 47 c2v4jE_ not modelled 98.9 23 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 48 d1fxra_ not modelled 98.8 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 49 c2v4jA_ not modelled 98.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 50 c3c7bA_ not modelled 98.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 51 d2bs2b1 not modelled 97.8 30 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 52 d1kf6b1 not modelled 97.8 29 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 d1nekb1 not modelled 97.7 29 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 54 c1nekB_ not modelled 97.6 34 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 55 c2h89B_ not modelled 97.5 27 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 56 c2bs2E_ not modelled 97.5 35 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 57 c2b76N_ not modelled 97.4 30 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 58 c3cf4A_ not modelled 97.1 26 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 59 d2v4jb1 not modelled 96.4 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 60 d2v4ja1 not modelled 93.3 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 d3c7ba1 not modelled 93.2 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 62 c2vdcI_ not modelled 87.7 30 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 63 d1fxda_ not modelled 76.5 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 64 c1f8sA_ not modelled 32.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:l-amino acid oxidase; PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate. 65 c2pmzS_ not modelled 27.7 23 PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 66 c2yg4B_ not modelled 27.3 24 PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine 67 c3nlcA_ not modelled 27.0 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147 68 c1ltxR_ not modelled 26.7 16 PDB header:transferase/protein binding Chain: R: PDB Molecule:rab escort protein 1; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid 69 c1h83A_ not modelled 26.5 15 PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase; PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane 70 c3rhaA_ not modelled 26.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:putrescine oxidase; PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens 71 d1vg0a1 not modelled 24.9 16 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 72 c3bnuA_ not modelled 24.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase fms1; PDBTitle: crystal structure of polyamine oxidase fms1 from2 saccharomyces cerevisiae in complex with bis-(3s,3's)-3 methylated spermine 73 c1gndA_ not modelled 24.7 13 PDB header:gtpase activation Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor; PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform 74 c1sezA_ not modelled 24.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase, mitochondrial; PDBTitle: crystal structure of protoporphyrinogen ix oxidase 75 c2jb1B_ not modelled 23.5 18 PDB header:oxidoreductase Chain: B: PDB Molecule:l-amino acid oxidase; PDBTitle: the l-amino acid oxidase from rhodococcus opacus in complex2 with l-alanine 76 c1s3bB_ not modelled 21.6 18 PDB header:oxidoreductase Chain: B: PDB Molecule:amine oxidase [flavin-containing] b; PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan 77 d1seza1 not modelled 21.2 21 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 78 c3p1wA_ not modelled 21.0 10 PDB header:protein transport Chain: A: PDB Molecule:rabgdi protein; PDBTitle: crystal structure of rab gdi from plasmodium falciparum, pfl2060c 79 d2dw4a2 not modelled 20.8 18 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 80 c3cpiH_ not modelled 20.7 6 PDB header:protein transport Chain: H: PDB Molecule:rab gdp-dissociation inhibitor; PDBTitle: crystal structure of yeast rab-gdi 81 d2bcgg1 not modelled 19.5 6 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 82 d1d5ta1 not modelled 19.5 13 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 83 d1reoa1 not modelled 19.4 18 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 84 c3hdqI_ not modelled 19.1 16 PDB header:isomerase Chain: I: PDB Molecule:udp-galactopyranose mutase; PDBTitle: crystal structure of udp-galactopyranose mutase (oxidized2 form) in complex with substrate 85 d1b5qa1 not modelled 18.7 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 86 d1gtea1 not modelled 18.5 44 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 87 c2vvlD_ not modelled 18.5 19 PDB header:oxidoreductase Chain: D: PDB Molecule:monoamine oxidase n; PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger. 88 c2xdoC_ not modelled 18.5 17 PDB header:oxidoreductase Chain: C: PDB Molecule:tetx2 protein; PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron 89 c2ivdA_ not modelled 18.4 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen 90 c2e1mA_ not modelled 18.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:l-glutamate oxidase; PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6 91 c2bi8A_ not modelled 17.7 12 PDB header:isomerase Chain: A: PDB Molecule:udp-galactopyranose mutase; PDBTitle: udp-galactopyranose mutase from klebsiella pneumoniae with2 reduced fad 92 c3qj4A_ not modelled 17.6 9 PDB header:oxidoreductase Chain: A: PDB Molecule:renalase; PDBTitle: crystal structure of human renalase (isoform 1) 93 c1i8tB_ not modelled 17.0 13 PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: strcuture of udp-galactopyranose mutase from e.coli 94 c3ka7A_ not modelled 16.8 29 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208 95 c3nksA_ not modelled 16.7 24 PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase 96 c2b9yA_ not modelled 16.6 30 PDB header:isomerase Chain: A: PDB Molecule:putative aminooxidase; PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes 97 d2iida1 not modelled 16.5 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 98 c2xagA_ not modelled 16.0 18 PDB header:transcription Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine 99 c2v1dA_ not modelled 16.0 18 PDB header:oxidoreductase/repressor Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0