Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	M	E	T	Q	D	I	I	K	R	S	A	T	N	S	I	T	P	P	S	Q	V	R	D	Y	K	A	E	V	A	K	L	I	D	V	S	T	C	I	G	C	K	A	C	Q	V	A	C	S	E	W	N	D	I	R	D	E	V	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																														?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	C	V	G	V	Y	D	N	P	A	D	L	S	A	K	S	W	T	V	M	R	F	S	E	T	E	Q	N	G	K	L	E	W	L	I	R	K	D	G	C	M	H	C	E	D	P	G	C	L	K	A	C	P	S	A	G	A	I	I	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	A	N	G	I	V	D	F	Q	S	E	N	C	I	G	C	G	Y	C	I	A	G	C	P	F	N	I	P	R	L	N	K	E	D	N	R	V	Y	K	C	T	L	C	V	D	R	V	S	V	G	Q	E	P	A	C	V	K	T	C	P
Secondary structure
SS confidence
Disorder																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	G	A	I	H	F	G	T	K	K	E	M	L	E	L	A	E	Q	R	V	A	K	L	K	A	R	G	Y	E	H	A	G	V	Y	N	P	E	G	V	G	G	T	H	V	M	Y	V	L	H	H	A	D	Q	P	E	L	Y	H	G	L
Secondary structure
SS confidence
Disorder																								?		?	?		?	?		?																									?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Sequence		P	K	D	P	K	I	D	T	S	V	S	L	W	K	G	A	L	K	P	L	A	A	A	G	F	I	A	T	F	A	G	L	I	F	H	Y	I	G	I	G	P	N	K	E	V	D	D	D	E	E	D	H	H	E
Secondary structure
SS confidence
Disorder			?		?		?	?																																?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1kqf chain B Region: 2 - 290 Aligned: 289 Modelled: 289 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli Phyre2 PDB 1kqf chain B domain 1 Region: 2 - 245 Aligned: 244 Modelled: 244 Confidence: 100.0% Identity: 100% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h0h chain B Region: 29 - 241 Aligned: 207 Modelled: 212 Confidence: 100.0% Identity: 34% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2ivf chain B Region: 27 - 286 Aligned: 250 Modelled: 255 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum Phyre2 PDB 1ti2 chain F Region: 27 - 239 Aligned: 197 Modelled: 213 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici Phyre2 PDB 2vpy chain B Region: 27 - 246 Aligned: 192 Modelled: 204 Confidence: 100.0% Identity: 33% PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) Phyre2 PDB 1vlf chain N domain 2 Region: 27 - 233 Aligned: 191 Modelled: 207 Confidence: 100.0% Identity: 24% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1y5i chain B domain 1 Region: 29 - 287 Aligned: 259 Modelled: 259 Confidence: 100.0% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 3gyx chain J Region: 32 - 181 Aligned: 92 Modelled: 92 Confidence: 99.4% Identity: 26% PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas Phyre2 PDB 1xer chain A Region: 113 - 188 Aligned: 76 Modelled: 76 Confidence: 99.4% Identity: 26% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Archaeal ferredoxins Phyre2 PDB 1jnr chain B Region: 93 - 250 Aligned: 144 Modelled: 156 Confidence: 99.4% Identity: 17% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fgo chain A Region: 125 - 206 Aligned: 80 Modelled: 81 Confidence: 99.4% Identity: 24% PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa Phyre2 PDB 2v2k chain B Region: 94 - 190 Aligned: 89 Modelled: 97 Confidence: 99.4% Identity: 16% PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis Phyre2 PDB 7fd1 chain A Region: 94 - 153 Aligned: 58 Modelled: 60 Confidence: 99.4% Identity: 22% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 2zvs chain B Region: 127 - 202 Aligned: 75 Modelled: 76 Confidence: 99.4% Identity: 17% PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli Phyre2 PDB 3c7b chain B domain 1 Region: 94 - 148 Aligned: 55 Modelled: 55 Confidence: 99.4% Identity: 25% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1h98 chain A Region: 93 - 171 Aligned: 77 Modelled: 79 Confidence: 99.4% Identity: 22% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: 7-Fe ferredoxin Phyre2 PDB 1blu chain A Region: 127 - 198 Aligned: 71 Modelled: 72 Confidence: 99.3% Identity: 27% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2fug chain 9 domain 1 Region: 124 - 188 Aligned: 56 Modelled: 65 Confidence: 99.3% Identity: 41% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 2fug chain G Region: 124 - 188 Aligned: 56 Modelled: 65 Confidence: 99.3% Identity: 41% PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 1 c1kqfB_ 2 d1kqfb1 3 d1h0hb_ 4 c2ivfB_ 5 c1ti2F_ 6 c2vpyB_ 7 d1vlfn2 8 d1y5ib1 9 c3gyxJ_ 10 d1xera_ 11 d1jnrb_ 12 c2fgoA_ 13 c2v2kB_ 14 d7fd1a_ 15 c2zvsB_ 16 d3c7bb1 17 d1h98a_ 18 d1blua_ 19 d2fug91 20 c2fugG_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1kqfB_ 100.0 100 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 2 d1kqfb1 100.0 100 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 3 d1h0hb_ 100.0 34 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 4 c2ivfB_ 100.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum 5 c1ti2F_ 100.0 22 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 6 c2vpyB_ 100.0 33 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 7 d1vlfn2 100.0 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 8 d1y5ib1 100.0 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 9 c3gyxJ_ 99.4 26 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 10 d1xera_ 99.4 26 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 11 d1jnrb_ 99.4 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 12 c2fgoA_ 99.4 24 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 13 c2v2kB_ 99.4 16 PDB header:electron transport Chain: B: PDB Molecule:ferredoxin; PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis 14 d7fd1a_ 99.4 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 15 c2zvsB_ 99.4 17 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 16 d3c7bb1 99.4 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 17 d1h98a_ 99.4 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 18 d1blua_ 99.3 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 19 d2fug91 99.3 41 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 20 c2fugG_ 99.3 41 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 21 d1rgva_ not modelled 99.3 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 22 d1bc6a_ not modelled 99.2 22 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 23 c1gthD_ not modelled 99.2 22 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 24 d1hfel2 not modelled 99.1 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 25 c1hfeL_ not modelled 99.1 25 PDB header:hydrogenase Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1) PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans 26 d2gmha3 not modelled 99.1 12 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 27 c2gmhA_ not modelled 99.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 28 d1jb0c_ not modelled 99.0 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 29 c2c3yA_ not modelled 99.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 30 d1gtea5 not modelled 99.0 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 31 c3c7bE_ not modelled 99.0 15 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 32 d1clfa_ not modelled 98.9 28 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 33 d1dura_ not modelled 98.9 30 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 34 d2c42a5 not modelled 98.9 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 35 d1fcaa_ not modelled 98.9 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 36 d3c8ya3 not modelled 98.9 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 37 c1gx7A_ not modelled 98.8 30 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 38 d2fug34 not modelled 98.8 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 39 d1sj1a_ not modelled 98.8 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 40 d2fdna_ not modelled 98.8 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 41 d1vjwa_ not modelled 98.8 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 42 c1dwlA_ not modelled 98.8 25 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation 43 d1fxra_ not modelled 98.7 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 44 c1c4cA_ not modelled 98.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 45 c3bk7A_ not modelled 98.7 35 PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii 46 d1iqza_ not modelled 98.6 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 47 c2fugC_ not modelled 98.6 19 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 48 c2v4jE_ not modelled 98.6 21 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 49 c3c7bA_ not modelled 98.2 18 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha; PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus 50 d1kqfb2 not modelled 98.2 100 Fold:Single transmembrane helix Superfamily:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor Family:Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 51 c2v4jA_ not modelled 98.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 52 d1kf6b1 not modelled 98.0 21 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 53 d2bs2b1 not modelled 97.9 20 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 54 d1nekb1 not modelled 97.7 16 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 55 c3cf4A_ not modelled 97.7 35 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 56 c1nekB_ not modelled 97.6 16 PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound 57 c2b76N_ not modelled 97.5 16 PDB header:oxidoreductase Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein; PDBTitle: e. coli quinol fumarate reductase frda e49q mutation 58 c2bs2E_ not modelled 97.3 17 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 59 c2h89B_ not modelled 97.2 17 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 60 d2v4jb1 not modelled 97.2 33 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 c2vdcI_ not modelled 94.7 28 PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 62 d2v4ja1 not modelled 90.9 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 63 d3c7ba1 not modelled 90.3 24 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 64 d1gtea1 not modelled 85.6 39 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Dihydropyrimidine dehydrogenase, N-terminal domain 65 d1fxda_ not modelled 72.3 23 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 66 c2kncA_ not modelled 45.2 8 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 67 d2r4qa1 not modelled 44.4 33 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 68 c2a91A_ not modelled 25.0 22 PDB header:signaling protein,transferase,membrane p Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: crystal structure of erbb2 domains 1-3 69 c1moxB_ not modelled 22.1 20 PDB header:transferase/growth factor Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: crystal structure of human epidermal growth factor receptor (residues2 1-501) in complex with tgf-alpha 70 c2dtgE_ not modelled 20.6 34 PDB header:hormone receptor/immune system Chain: E: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (ir) ectodomain in complex with fab's 71 c1g8jC_ not modelled 19.4 16 PDB header:oxidoreductase Chain: C: PDB Molecule:arsenite oxidase; PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis 72 d1djqa3 not modelled 18.3 38 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 73 c2fugA_ not modelled 15.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 74 d1yuza2 not modelled 14.2 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 75 d2noca1 not modelled 12.0 13 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 76 c2rhbD_ not modelled 10.0 24 PDB header:viral protein Chain: D: PDB Molecule:uridylate-specific endoribonuclease; PDBTitle: crystal structure of nsp15-h234a mutant- hexamer in2 asymmetric unit 77 c2a45J_ not modelled 9.9 32 PDB header:hydrolase/hydrolase inhibitor Chain: J: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin 78 c2eqpA_ not modelled 9.3 36 PDB header:transcription Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the stn_tnfrsf12a_tnfr domain of2 tumor necrosis factor receptor superfamily member 12a3 precursor 79 d1i0va_ not modelled 9.2 20 Fold:Microbial ribonucleases Superfamily:Microbial ribonucleases Family:Fungal ribonucleases 80 d2r48a1 not modelled 9.2 16 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 81 d1rdsa_ not modelled 9.0 14 Fold:Microbial ribonucleases Superfamily:Microbial ribonucleases Family:Fungal ribonucleases 82 c1deqD_ not modelled 9.0 29 PDB header: PDB COMPND: 83 c2a5hC_ not modelled 8.3 22 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 84 c1skzA_ not modelled 8.0 19 PDB header:serine protease inhibitor Chain: A: PDB Molecule:antistasin; PDBTitle: protease inhibitor 85 c2dxbR_ not modelled 7.6 35 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 86 c2kn0A_ not modelled 7.6 36 PDB header:apoptosis Chain: A: PDB Molecule:fn14; PDBTitle: solution nmr structure of xenopus fn14 87 c3qyhG_ not modelled 7.4 29 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 88 c1vbjB_ not modelled 7.4 17 PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin f synthase; PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei 89 c2pmzS_ not modelled 7.4 21 PDB header:translation, transferase Chain: S: PDB Molecule:dna-directed rna polymerase subunit d; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 90 c3ghgD_ not modelled 7.3 32 PDB header:blood clotting Chain: D: PDB Molecule:fibrinogen alpha chain; PDBTitle: crystal structure of human fibrinogen 91 c2hr7B_ not modelled 6.9 18 PDB header:transferase Chain: B: PDB Molecule:insulin receptor; PDBTitle: insulin receptor (domains 1-3) 92 c3iufA_ not modelled 6.8 22 PDB header:protein binding Chain: A: PDB Molecule:zinc finger protein ubi-d4; PDBTitle: crystal structure of the c2h2-type zinc finger domain of2 human ubi-d4 93 d2dmda3 not modelled 6.7 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 94 d1nnqa2 not modelled 6.4 38 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 95 c3k7aM_ not modelled 6.1 26 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 96 d1kbsa_ not modelled 5.6 29 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Snake venom toxins 97 d1x5wa2 not modelled 5.4 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 98 c1m1jA_ not modelled 5.4 21 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 99 d2cs3a1 not modelled 5.4 36 Fold:RING/U-box Superfamily:RING/U-box Family:Variant RING domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0