Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	I	P	R	S	S	D	I	S	P	G	I	D	G	I	C	P	G	P	F	P	P	N	G	F	T	V	L	T	D	A	A	Y	G	N	G	D	C	F	G	L	Y	W	P	I	G	Q	E	H	K	L	P	I	V	C	E	T	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	D	E	W	R	I	V	P	A	F	S	S	I	K	K	F	E	E	W	L	E	V	N	D	D	D	P	H	E	N	G	I	S	I	E	D	Q	D	F	A	A	N	L	F	R	V	A	R	K	C	L	S	T	G	R	L	D	D	A	L
Secondary structure
SS confidence
Disorder																							?		?			?	?	?	?	?				?																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	L	L	Q	R	A	T	E	Q	L	P	E	V	S	E	Y	W	L	A	L	A	I	Q	Y	R	R	C	K	K	T	E	A	A	A	Q	A	A	L	N	A	Y	L	G	N	W	A	F	G	V	P	D	N	K	V	I	H	L	L	S	Q
Secondary structure
SS confidence
Disorder																												?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	A	D	V	P	N	F	Q	D	D	P	V	I	Q	C	I	K	E	Q	G	L	D	L	S	F	G	G	T	K	E	N	N	N	Y	P	L	M	Q	M	C	V	D	T	Y	F	A	Q	R	K	P	L	Q	A	L	T	L	L	H	N	Y
Secondary structure
SS confidence
Disorder					?																				?				?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Sequence		A	W	I	M	S	S	E	T	T	A	F	Q	E	R	Y	D	F	N	I	D	E	W	R	A	K	F	R	Q	L	C	L	E	Y	F	G	D	S	R	T	Q	F	T
Secondary structure
SS confidence
Disorder								?	?	?	?	?																											?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kat chain A Region: 73 - 156 Aligned: 71 Modelled: 84 Confidence: 93.5% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein bpp2914 from bordetella2 parapertussis. northeast structural genomics consortium3 target bpr206 Phyre2 PDB 3gyz chain B Region: 65 - 160 Aligned: 83 Modelled: 96 Confidence: 90.3% Identity: 18% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein ipgc; PDBTitle: crystal structure of ipgc from shigella flexneri Phyre2 PDB 2kcv chain A Region: 95 - 160 Aligned: 66 Modelled: 66 Confidence: 90.2% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tetratricopeptide repeat domain protein; PDBTitle: solution nmr structure of tetratricopeptide repeat domain2 protein sru_0103 from salinibacter ruber, northeast3 structural genomics consortium (nesg) target srr115c Phyre2 PDB 3k9i chain A Region: 73 - 160 Aligned: 78 Modelled: 88 Confidence: 90.0% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:bh0479 protein; PDBTitle: crystal structure of putative protein binding protein (np_241345.1)2 from bacillus halodurans at 2.71 a resolution Phyre2 PDB 2vyi chain A Region: 94 - 160 Aligned: 67 Modelled: 67 Confidence: 89.4% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:sgta protein; PDBTitle: crystal structure of the tpr domain of human sgt Phyre2 PDB 2xcb chain A Region: 96 - 156 Aligned: 61 Modelled: 61 Confidence: 89.1% Identity: 21% PDB header:protein binding Chain: A: PDB Molecule:regulatory protein pcrh; PDBTitle: crystal structure of pcrh in complex with the chaperone2 binding region of popd Phyre2 PDB 1hxi chain A Region: 96 - 162 Aligned: 66 Modelled: 67 Confidence: 88.5% Identity: 20% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 2r5s chain B Region: 103 - 239 Aligned: 125 Modelled: 132 Confidence: 86.9% Identity: 23% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 Phyre2 PDB 3pe3 chain D Region: 98 - 160 Aligned: 63 Modelled: 63 Confidence: 86.4% Identity: 24% PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate Phyre2 PDB 3fp4 chain A Region: 95 - 160 Aligned: 66 Modelled: 66 Confidence: 83.2% Identity: 17% PDB header:transport protein Chain: A: PDB Molecule:tpr repeat-containing protein yhr117w; PDBTitle: crystal structure of tom71 complexed with ssa1 c-terminal2 fragment Phyre2 PDB 3cvp chain A Region: 102 - 160 Aligned: 59 Modelled: 59 Confidence: 82.1% Identity: 22% PDB header:transport protein Chain: A: PDB Molecule:peroxisome targeting signal 1 receptor pex5; PDBTitle: structure of peroxisomal targeting signal 1 (pts1) binding2 domain of trypanosoma brucei peroxin 5 (tbpex5)complexed3 to pts1 peptide (10-skl) Phyre2 PDB 1w3b chain A Region: 103 - 160 Aligned: 58 Modelled: 58 Confidence: 80.9% Identity: 17% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 1fch chain A Region: 102 - 160 Aligned: 59 Modelled: 59 Confidence: 78.8% Identity: 24% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 1elw chain A Region: 100 - 160 Aligned: 61 Modelled: 61 Confidence: 78.6% Identity: 21% Fold: alpha-alpha superhelix Superfamily: TPR-like Family: Tetratricopeptide repeat (TPR) Phyre2 PDB 1wao chain 4 Region: 100 - 160 Aligned: 61 Modelled: 61 Confidence: 77.8% Identity: 21% PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure Phyre2 PDB 2vsn chain B Region: 96 - 160 Aligned: 65 Modelled: 65 Confidence: 77.0% Identity: 28% PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation Phyre2 PDB 3hym chain B Region: 103 - 160 Aligned: 58 Modelled: 58 Confidence: 76.8% Identity: 9% PDB header:cell cycle, ligase Chain: B: PDB Molecule:cell division cycle protein 16 homolog; PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure Phyre2 PDB 2kc7 chain A Region: 102 - 160 Aligned: 59 Modelled: 59 Confidence: 75.8% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bfr218_protein; PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218 Phyre2 PDB 1zbp chain A domain 1 Region: 107 - 160 Aligned: 54 Modelled: 51 Confidence: 75.5% Identity: 22% Fold: ImpE-like Superfamily: ImpE-like Family: ImpE-like Phyre2 PDB 1fch chain B Region: 100 - 160 Aligned: 61 Modelled: 61 Confidence: 74.6% Identity: 23% PDB header:signaling protein Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor; PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5 Phyre2 1 c2katA_ 2 c3gyzB_ 3 c2kcvA_ 4 c3k9iA_ 5 c2vyiA_ 6 c2xcbA_ 7 d1hxia_ 8 c2r5sB_ 9 c3pe3D_ 10 c3fp4A_ 11 c3cvpA_ 12 d1w3ba_ 13 d1fcha_ 14 d1elwa_ 15 c1wao4_ 16 c2vsnB_ 17 c3hymB_ 18 c2kc7A_ 19 d1zbpa1 20 c1fchB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2katA_ 93.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein bpp2914 from bordetella2 parapertussis. northeast structural genomics consortium3 target bpr206 2 c3gyzB_ 90.3 18 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein ipgc; PDBTitle: crystal structure of ipgc from shigella flexneri 3 c2kcvA_ 90.2 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tetratricopeptide repeat domain protein; PDBTitle: solution nmr structure of tetratricopeptide repeat domain2 protein sru_0103 from salinibacter ruber, northeast3 structural genomics consortium (nesg) target srr115c 4 c3k9iA_ 90.0 14 PDB header:protein binding Chain: A: PDB Molecule:bh0479 protein; PDBTitle: crystal structure of putative protein binding protein (np_241345.1)2 from bacillus halodurans at 2.71 a resolution 5 c2vyiA_ 89.4 21 PDB header:chaperone Chain: A: PDB Molecule:sgta protein; PDBTitle: crystal structure of the tpr domain of human sgt 6 c2xcbA_ 89.1 21 PDB header:protein binding Chain: A: PDB Molecule:regulatory protein pcrh; PDBTitle: crystal structure of pcrh in complex with the chaperone2 binding region of popd 7 d1hxia_ 88.5 20 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 8 c2r5sB_ 86.9 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp0806; PDBTitle: the crystal structure of a domain of protein vp0806 (unknown function)2 from vibrio parahaemolyticus rimd 2210633 9 c3pe3D_ 86.4 24 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 10 c3fp4A_ 83.2 17 PDB header:transport protein Chain: A: PDB Molecule:tpr repeat-containing protein yhr117w; PDBTitle: crystal structure of tom71 complexed with ssa1 c-terminal2 fragment 11 c3cvpA_ 82.1 22 PDB header:transport protein Chain: A: PDB Molecule:peroxisome targeting signal 1 receptor pex5; PDBTitle: structure of peroxisomal targeting signal 1 (pts1) binding2 domain of trypanosoma brucei peroxin 5 (tbpex5)complexed3 to pts1 peptide (10-skl) 12 d1w3ba_ 80.9 17 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 13 d1fcha_ 78.8 24 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 14 d1elwa_ 78.6 21 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 15 c1wao4_ 77.8 21 PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure 16 c2vsnB_ 77.0 28 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 17 c3hymB_ 76.8 9 PDB header:cell cycle, ligase Chain: B: PDB Molecule:cell division cycle protein 16 homolog; PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure 18 c2kc7A_ 75.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bfr218_protein; PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218 19 d1zbpa1 75.5 22 Fold:ImpE-like Superfamily:ImpE-like Family:ImpE-like 20 c1fchB_ 74.6 23 PDB header:signaling protein Chain: B: PDB Molecule:peroxisomal targeting signal 1 receptor; PDBTitle: crystal structure of the pts1 complexed to the tpr region2 of human pex5 21 c3iegB_ not modelled 73.6 21 PDB header:chaperone Chain: B: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of p58(ipk) tpr domain at 2.5 a 22 c3q49B_ not modelled 72.6 21 PDB header:ligase/chaperone Chain: B: PDB Molecule:stip1 homology and u box-containing protein 1; PDBTitle: crystal structure of the tpr domain of chip complexed with hsp70-c2 peptide 23 c2xpiA_ not modelled 65.2 17 PDB header:cell cycle Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9; PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1 24 c2kckA_ not modelled 64.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tpr repeat; PDBTitle: nmr solution structure of the northeast structural genomics2 consortium (nesg) target mrr121a 25 c2pl2A_ not modelled 64.0 25 PDB header:protein binding Chain: A: PDB Molecule:hypothetical conserved protein ttc0263; PDBTitle: crystal structure of ttc0263: a thermophilic tpr protein in thermus2 thermophilus hb27 26 c2y4tA_ not modelled 62.3 18 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of the human co-chaperone p58(ipk) 27 c2vgxA_ not modelled 61.8 15 PDB header:chaperone Chain: A: PDB Molecule:chaperone sycd; PDBTitle: structure of the yersinia enterocolitica type iii secretion2 translocator chaperone sycd 28 c3sz7A_ not modelled 59.9 18 PDB header:chaperone regulator Chain: A: PDB Molecule:hsc70 cochaperone (sgt); PDBTitle: crystal structure of the sgt2 tpr domain from aspergillus fumigatus 29 c3qdnA_ not modelled 59.8 27 PDB header:oxidoreductase Chain: A: PDB Molecule:putative thioredoxin protein; PDBTitle: putative thioredoxin protein from salmonella typhimurium 30 d2c2la1 not modelled 59.0 21 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 31 d2buga1 not modelled 58.4 21 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 32 c2uy1A_ not modelled 57.4 10 PDB header:rna-binding protein Chain: A: PDB Molecule:cleavage stimulation factor 77; PDBTitle: crystal structure of cstf-77 33 c3mkrA_ not modelled 54.7 18 PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat 34 c1na3A_ not modelled 52.0 22 PDB header:de novo protein Chain: A: PDB Molecule:designed protein ctpr2; PDBTitle: design of stable alpha-helical arrays from an idealized tpr2 motif 35 c2gw1A_ not modelled 49.7 27 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial precursor proteins import receptor; PDBTitle: crystal structure of the yeast tom70 36 c2ho1B_ not modelled 49.4 19 PDB header:protein binding Chain: B: PDB Molecule:type 4 fimbrial biogenesis protein pilf; PDBTitle: functional characterization of pseudomonas aeruginosa pilf 37 c2hyzA_ not modelled 45.9 23 PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix2 (orthorombic crystal form) 38 c2l6jA_ not modelled 44.4 10 PDB header:protein binding Chain: A: PDB Molecule:tpr repeat-containing protein associated with hsp90; PDBTitle: tah1 complexed by meevd 39 c2q7fA_ not modelled 43.4 17 PDB header:protein binding Chain: A: PDB Molecule:yrrb protein; PDBTitle: crystal structure of yrrb: a tpr protein with an unusual peptide-2 binding site 40 c2e2eA_ not modelled 42.7 16 PDB header:lyase Chain: A: PDB Molecule:formate-dependent nitrite reductase complex nrfg subunit; PDBTitle: tpr domain of nrfg mediates the complex formation between heme lyase2 and formate-dependent nitrite reductase in escherichia coli o157:h7 41 c2xevB_ not modelled 42.1 25 PDB header:metal binding Chain: B: PDB Molecule:ybgf; PDBTitle: crystal structure of the tpr domain of xanthomonas2 campestris ybgf 42 c3fflC_ not modelled 41.8 15 PDB header:cell cycle Chain: C: PDB Molecule:anaphase-promoting complex subunit 7; PDBTitle: crystal structure of the n-terminal domain of anaphase-2 promoting complex subunit 7 43 c3ly8A_ not modelled 41.1 18 PDB header:signaling protein Chain: A: PDB Molecule:transcriptional activator cadc; PDBTitle: crystal structure of mutant d471e of the periplasmic domain of cadc 44 d1a17a_ not modelled 40.1 21 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 45 c3q75A_ not modelled 40.0 13 PDB header:transferase Chain: A: PDB Molecule:farnesyltransferase alpha subunit; PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpt-ii and tkcvvm peptide 46 c2avpA_ not modelled 39.9 23 PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix 47 c3thdD_ not modelled 38.8 36 PDB header:hydrolase Chain: D: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of human beta-galactosidase in complex with 1-2 deoxygalactonojirimycin 48 d2ooea1 not modelled 38.4 12 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:HAT/Suf repeat 49 c1ihgA_ not modelled 37.6 26 PDB header:isomerase Chain: A: PDB Molecule:cyclophilin 40; PDBTitle: bovine cyclophilin 40, monoclinic form 50 c2vq2A_ not modelled 37.6 17 PDB header:structural protein Chain: A: PDB Molecule:putative fimbrial biogenesis and twitching PDBTitle: crystal structure of pilw, widely conserved type iv pilus2 biogenesis factor 51 d2ff4a2 not modelled 37.1 20 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:BTAD-like 52 d1jr1a4 not modelled 36.9 47 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 53 d1hh8a_ not modelled 36.7 11 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 54 d1qsaa1 not modelled 36.3 11 Fold:alpha-alpha superhelix Superfamily:Bacterial muramidases Family:Bacterial muramidases 55 d1iyga_ not modelled 30.7 17 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 56 c2c2lD_ not modelled 30.6 21 PDB header:chaperone Chain: D: PDB Molecule:carboxy terminus of hsp70-interacting protein; PDBTitle: crystal structure of the chip u-box e3 ubiquitin ligase 57 c3d3aA_ not modelled 30.3 36 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: crystal structure of a beta-galactosidase from bacteroides2 thetaiotaomicron 58 d1ihga1 not modelled 29.4 26 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 59 c1xc6A_ not modelled 27.8 38 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: native structure of beta-galactosidase from penicillium sp. in complex2 with galactose 60 c2fbnA_ not modelled 27.6 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase, putative; PDBTitle: plasmodium falciparum putative fk506-binding protein2 pfl2275c, c-terminal tpr-containing domain 61 d2fbna1 not modelled 27.6 17 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 62 c3ogrA_ not modelled 27.2 38 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: complex structure of beta-galactosidase from trichoderma reesei with2 galactose 63 d1pc2a_ not modelled 26.5 23 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 64 c3urzB_ not modelled 26.1 10 PDB header:protein binding Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a hypothetical protein (bacova_03105) from2 bacteroides ovatus atcc 8483 at 2.19 a resolution 65 d1hz4a_ not modelled 24.5 22 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Transcription factor MalT domain III 66 c2dbaA_ not modelled 23.0 18 PDB header:structural protein Chain: A: PDB Molecule:smooth muscle cell associated protein-1, isoform PDBTitle: the solution structure of the tetratrico peptide repeat of2 human smooth muscle cell associated protein-1, isoform 2 67 c3jroC_ not modelled 22.5 16 PDB header:transport protein, structural protein Chain: C: PDB Molecule:nucleoporin nup84; PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 68 c3ikoC_ not modelled 22.4 16 PDB header:structural protein, protein transport Chain: C: PDB Molecule:nucleoporin nup84; PDBTitle: crystal structure of the heterotrimeric sec13-nup145c-nup842 nucleoporin complex 69 c3draA_ not modelled 21.9 7 PDB header:transferase Chain: A: PDB Molecule:protein PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp 70 c2olvA_ not modelled 21.2 24 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein 2; PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex 71 d1tjca_ not modelled 21.1 15 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 72 c1qz2B_ not modelled 18.4 19 PDB header:isomerase/chaperone Chain: B: PDB Molecule:fk506-binding protein 4; PDBTitle: crystal structure of fkbp52 c-terminal domain complex with2 the c-terminal peptide meevd of hsp90 73 c2xzeA_ not modelled 17.7 24 PDB header:hydrolase/protein transport Chain: A: PDB Molecule:stam-binding protein; PDBTitle: structural basis for amsh-escrt-iii chmp3 interaction 74 d2onda1 not modelled 17.5 17 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:HAT/Suf repeat 75 c3qkyA_ not modelled 17.3 19 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd 76 c2xjqA_ not modelled 16.6 26 PDB header:cell adhesion Chain: A: PDB Molecule:flocculation protein flo5; PDBTitle: x-ray structure of the n-terminal domain of the flocculin2 flo5 from saccharomyces cerevisiae 77 d1xnfa_ not modelled 16.2 20 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 78 d1zu2a1 not modelled 15.2 24 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 79 d1hcca_ not modelled 14.5 26 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 80 c1hccA_ not modelled 14.5 26 PDB header:glycoprotein Chain: A: PDB Molecule:16th complement control protein; PDBTitle: three-dimensional structure of a complement control protein2 module in solution 81 c1cw5A_ not modelled 14.2 54 PDB header:toxin Chain: A: PDB Molecule:type iia bacteriocin carnobacteriocin b2; PDBTitle: solution structure of carnobacteriocin b2 82 c3as5A_ not modelled 12.9 22 PDB header:protein binding Chain: A: PDB Molecule:mama; PDBTitle: mama amb-1 p212121 83 c1vzjB_ not modelled 12.4 30 PDB header:hydrolase Chain: B: PDB Molecule:acetylcholinesterase; PDBTitle: structure of the tetramerization domain of2 acetylcholinesterase: four-fold interaction of a www motif3 with a left-handed polyproline helix 84 d1sisa_ not modelled 11.1 86 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 85 c2yhcA_ not modelled 10.2 14 PDB header:membrane protein Chain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli 86 c2zzfA_ not modelled 10.0 27 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain 87 d1p5qa1 not modelled 10.0 16 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 88 c1ibtC_ not modelled 9.5 26 PDB header:lyase Chain: C: PDB Molecule:histidine decarboxylase beta chain; PDBTitle: structure of the d53,54n mutant of histidine decarboxylase at-170 c 89 d1t46a_ not modelled 9.5 18 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Protein kinases, catalytic subunit 90 c2ff4B_ not modelled 9.4 20 PDB header:transcription Chain: B: PDB Molecule:probable regulatory protein embr; PDBTitle: mycobacterium tuberculosis embr in complex with low affinity2 phosphopeptide 91 d3ehbb1 not modelled 9.1 36 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 92 d1elra_ not modelled 9.0 18 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:Tetratricopeptide repeat (TPR) 93 c3da4B_ not modelled 9.0 32 PDB header:antibiotic Chain: B: PDB Molecule:colicin-m; PDBTitle: crystal structure of colicin m, a novel phosphatase2 specifically imported by escherichia coli 94 c3q3hA_ not modelled 8.7 6 PDB header:transferase Chain: A: PDB Molecule:hmw1c-like glycosyltransferase; PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc 95 d3dtub1 not modelled 8.7 28 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 96 c3sf4B_ not modelled 8.7 14 PDB header:signaling protein/protein binding Chain: B: PDB Molecule:g-protein-signaling modulator 2; PDBTitle: crystal structure of the complex between the conserved cell polarity2 proteins inscuteable and lgn 97 c3nf1A_ not modelled 8.6 31 PDB header:motor protein, transport protein Chain: A: PDB Molecule:kinesin light chain 1; PDBTitle: crystal structure of the tpr domain of kinesin light chain 1 98 c3h2zA_ not modelled 8.5 52 PDB header:oxidoreductase Chain: A: PDB Molecule:mannitol-1-phosphate 5-dehydrogenase; PDBTitle: the crystal structure of mannitol-1-phosphate dehydrogenase from2 shigella flexneri 99 d1lj8a4 not modelled 8.4 30 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0