Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP00904
DateWed Jan 25 15:20:09 GMT 2012
Unique Job ID24cea6bdc20c2587

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1khdD_
Top template information
PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum)
Confidence and coverage
Confidence:100.0% Coverage: 62%
329 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
521 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGV
Secondary structure 
SS confidence 
Disorder  ??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMF
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  AGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQFHPESILTTQGA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RLLEQTLAWAQQKLEPANTLQPILEKLYQAQTLSQQESHQLFSAVVRGELKPEQLAAALV
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAAC
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYHTGFRHA
Secondary structure 
SS confidence 
Disorder 
????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  MPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  MDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKG
Secondary structure 
SS confidence 
Disorder 
?
???
??
Disorder confidence 
 
   .........490.........500.........510.........520.........530.
Sequence  DAAHEAAVAANVAMLMRLHGHEDLQANAQTVLEVLRSGSAYDRVTALAARG
Secondary structure 
SS confidence 
Disorder  ?
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1khd chain D

3D model

Region: 199 - 530
Aligned: 329
Modelled: 332
Confidence: 100.0%
Identity: 75%
PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum)

Phyre2

PDB 1v8g chain B

3D model

Region: 202 - 529
Aligned: 323
Modelled: 328
Confidence: 100.0%
Identity: 42%
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8

Phyre2

PDB 2bpq chain B

3D model

Region: 198 - 529
Aligned: 322
Modelled: 332
Confidence: 100.0%
Identity: 29%
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)

Phyre2

PDB 1o17 chain A

3D model

Region: 199 - 529
Aligned: 322
Modelled: 331
Confidence: 100.0%
Identity: 32%
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyl-transferase (trpd)

Phyre2

PDB 1vqu chain B

3D model

Region: 199 - 529
Aligned: 322
Modelled: 331
Confidence: 100.0%
Identity: 37%
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution

Phyre2

PDB 3h5q chain A

3D model

Region: 195 - 531
Aligned: 313
Modelled: 325
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus

Phyre2

PDB 2dsj chain A

3D model

Region: 199 - 531
Aligned: 304
Modelled: 325
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8

Phyre2

PDB 1otp chain A

3D model

Region: 199 - 531
Aligned: 310
Modelled: 333
Confidence: 100.0%
Identity: 15%
PDB header:phosphorylase
Chain: A: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase

Phyre2

PDB 1brw chain B

3D model

Region: 199 - 531
Aligned: 310
Modelled: 333
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase);
PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation

Phyre2

PDB 2j0f chain C

3D model

Region: 199 - 531
Aligned: 309
Modelled: 325
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design

Phyre2

PDB 1khd chain A domain 2

3D model

Region: 268 - 530
Aligned: 255
Modelled: 263
Confidence: 100.0%
Identity: 77%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2

PDB 2elc chain A domain 2

3D model

Region: 266 - 529
Aligned: 259
Modelled: 264
Confidence: 100.0%
Identity: 44%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2

PDB 1o17 chain A domain 2

3D model

Region: 273 - 529
Aligned: 253
Modelled: 257
Confidence: 100.0%
Identity: 29%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2

PDB 1uou chain A domain 2

3D model

Region: 265 - 531
Aligned: 242
Modelled: 267
Confidence: 100.0%
Identity: 21%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2

PDB 1brw chain A domain 2

3D model

Region: 270 - 531
Aligned: 238
Modelled: 256
Confidence: 100.0%
Identity: 18%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2

PDB 2tpt chain A domain 2

3D model

Region: 270 - 531
Aligned: 240
Modelled: 262
Confidence: 100.0%
Identity: 16%
Fold: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain

Phyre2

PDB 1i7q chain B

3D model

Region: 2 - 193
Aligned: 192
Modelled: 192
Confidence: 100.0%
Identity: 82%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2

PDB 2ywc chain C

3D model

Region: 3 - 209
Aligned: 200
Modelled: 206
Confidence: 100.0%
Identity: 29%
PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp

Phyre2

PDB 2vxo chain B

3D model

Region: 3 - 209
Aligned: 199
Modelled: 207
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp

Phyre2

PDB 1gpm chain D

3D model

Region: 3 - 209
Aligned: 202
Modelled: 207
Confidence: 100.0%
Identity: 24%
PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate

Phyre2

PDB 1i1q chain B

3D model

Region: 2 - 193
Aligned: 186
Modelled: 186
Confidence: 100.0%
Identity: 94%
Fold: Flavodoxin-like
Superfamily: Class I glutamine amidotransferase-like
Family: Class I glutamine amidotransferases (GAT)

Phyre2
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c1khdD_
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c1v8gB_
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c2bpqB_
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c1o17A_
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c1vquB_
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c3h5qA_
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c2dsjA_
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c1otpA_
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c1brwB_
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c2j0fC_
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d1khda2
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d2elca2
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d1o17a2
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d1uoua2
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d1brwa2
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d2tpta2
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d1i7qb_
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c1gpmD_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1khdD_
100.0 75 PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum)
2c1v8gB_
100.0 42 PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8
3c2bpqB_
100.0 29 PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
4c1o17A_
100.0 32 PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyl-transferase (trpd)
5c1vquB_
100.0 37 PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution
6c3h5qA_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
7c2dsjA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
8c1otpA_
100.0 15 PDB header:phosphorylase
Chain: A: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
9c1brwB_
100.0 18 PDB header:transferase
Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase);
PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation
10c2j0fC_
100.0 24 PDB header:transferase
Chain: C: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design
11d1khda2
100.0 77 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
12d2elca2
100.0 44 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
13d1o17a2
100.0 29 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
14d1uoua2
100.0 21 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
15d1brwa2
100.0 18 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
16d2tpta2
100.0 16 Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
17d1i7qb_
100.0 82 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
18c2ywcC_
100.0 29 PDB header:ligase
Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
19c2vxoB_
100.0 20 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
20c1gpmD_
100.0 24 PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
21c3r74B_
not modelled 100.0 27 PDB header:lyase, biosynthetic protein
Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i;
PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
22d1i1qb_
100.0 94 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
23d1qdlb_
not modelled 100.0 35 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
24d1wl8a1
not modelled 100.0 28 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
25c3tqiB_
not modelled 100.0 26 PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii
26c1keeH_
not modelled 100.0 24 PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
27c2vpiA_
not modelled 100.0 20 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
28d1a9xb2
not modelled 100.0 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
29d2a9va1
not modelled 100.0 26 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
30c3uowB_
not modelled 100.0 18 PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
31d1gpma2
not modelled 100.0 26 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
32c1jvnB_
not modelled 100.0 19 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
33d1jvna2
not modelled 100.0 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
34d1ka9h_
not modelled 100.0 25 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
35d1k9vf_
not modelled 100.0 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
36d1vcoa1
not modelled 100.0 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
37d1s1ma1
not modelled 100.0 21 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
38d2nv0a1
not modelled 100.0 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
39c2w7tA_
not modelled 99.9 18 PDB header:ligase
Chain: A: PDB Molecule:putative cytidine triphosphate synthase;
PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin
40d1o1ya_
not modelled 99.9 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
41c3l7nA_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of smu.1228c
42c3l83A_
not modelled 99.9 17 PDB header:transferase
Chain: A: PDB Molecule:glutamine amido transferase;
PDBTitle: crystal structure of glutamine amido transferase from methylobacillus2 flagellatus
43c2v4uA_
not modelled 99.9 21 PDB header:ligase
Chain: A: PDB Molecule:ctp synthase 2;
PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
44c3fijD_
not modelled 99.9 19 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:lin1909 protein;
PDBTitle: crystal structure of a uncharacterized protein lin1909
45c3d54D_
not modelled 99.9 15 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
46d1q7ra_
not modelled 99.9 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
47d1l9xa_
not modelled 99.9 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
48c1l9xA_
not modelled 99.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyl hydrolase;
PDBTitle: structure of gamma-glutamyl hydrolase
49c2issF_
not modelled 99.9 18 PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
50c3nvaB_
not modelled 99.9 17 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
51c2ad5B_
not modelled 99.9 19 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
52c2ywjA_
not modelled 99.9 14 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
53c1vcnA_
not modelled 99.9 20 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
54c2ywdA_
not modelled 99.9 20 PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
55d2abwa1
not modelled 99.8 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
56d1t3ta2
not modelled 99.8 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
57d2ghra1
not modelled 99.8 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:HTS-like
58c2h2wA_
not modelled 99.8 21 PDB header:transferase
Chain: A: PDB Molecule:homoserine o-succinyltransferase;
PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution
59d1khda1
not modelled 99.7 70 Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
60d1brwa1
not modelled 99.6 16 Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
61d1o17a1
not modelled 99.6 35 Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
62d2tpta1
not modelled 99.6 16 Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
63d1uoua1
not modelled 99.6 22 Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
64d1v8ga1
not modelled 99.6 34 Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
65d2elca1
not modelled 99.2 31 Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
66c1t3tA_
not modelled 97.5 20 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
67d1vhqa_
not modelled 97.3 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
68c3uk7B_
not modelled 97.2 23 PDB header:transferase
Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing
PDBTitle: crystal structure of arabidopsis thaliana dj-1d
69c3l3bA_
not modelled 97.1 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:es1 family protein;
PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution
70c3n7tA_
not modelled 96.7 18 PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
71d1sy7a1
not modelled 96.6 9 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
72c1sy7B_
not modelled 96.6 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:catalase 1;
PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution.
73c3l4eA_
not modelled 96.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
74c3f5dA_
not modelled 96.3 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
75d1p5fa_
not modelled 96.1 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
76d1u9ca_
not modelled 96.1 14 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
77c3cneD_
not modelled 96.0 17 PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
78c3kklA_
not modelled 95.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
79d1qvwa_
not modelled 95.8 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
80d1oi4a1
not modelled 95.7 23 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
81d1fyea_
not modelled 95.5 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Aspartyl dipeptidase PepE
82d1g2ia_
not modelled 95.4 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
83c3fseB_
not modelled 95.3 12 PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
84d1p80a1
not modelled 95.3 13 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Catalase, C-terminal domain
85c3c3mA_
not modelled 95.1 13 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
86c3crnA_
not modelled 94.7 18 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
87d1n57a_
not modelled 94.6 18 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
88d2ab0a1
not modelled 94.6 15 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
89c2jrlA_
not modelled 94.4 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
90c3i42A_
not modelled 94.3 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
91c2vrnA_
not modelled 94.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:protease i;
PDBTitle: the structure of the stress response protein dr1199 from2 deinococcus radiodurans: a member of the dj-1 superfamily
92c3ot1B_
not modelled 93.7 16 PDB header:structural genomics
Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate
PDBTitle: crystal structure of vc2308 protein
93d2fexa1
not modelled 93.5 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
94d1vkma_
not modelled 93.4 18 Fold:Indigoidine synthase A-like
Superfamily:Indigoidine synthase A-like
Family:Indigoidine synthase A-like
95d1p3da1
not modelled 93.2 22 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
96d1xhfa1
not modelled 93.0 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
97c2f00A_
not modelled 92.9 15 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
98d1xi8a3
not modelled 92.7 9 Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
99c3nhzA_
not modelled 92.4 16 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
100c2qr3A_
not modelled 92.2 15 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
101d1zesa1
not modelled 92.0 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
102c2j48A_
not modelled 91.9 19 PDB header:transferase
Chain: A: PDB Molecule:two-component sensor kinase;
PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
103c1ys7B_
not modelled 91.8 13 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
104c2qzjC_
not modelled 91.8 15 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
105c3b2nA_
not modelled 91.6 7 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
106d1w25a1
not modelled 91.5 18 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
107c2zwmA_
not modelled 91.5 19 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
108d2pl1a1
not modelled 91.3 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
109d1kx5d_
not modelled 91.3 17 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
110d1mvoa_
not modelled 91.3 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
111c3cfyA_
not modelled 91.2 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
112c2oqrA_
not modelled 91.1 18 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
113d1ny5a1
not modelled 91.0 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
114c3r0jA_
not modelled 91.0 16 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
115c3jteA_
not modelled 91.0 17 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
116c3cg0A_
not modelled 90.9 18 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
117c3t6kB_
not modelled 90.8 16 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
118d1eqzb_
not modelled 90.8 17 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
119c3gt7A_
not modelled 90.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
120c1p81A_
not modelled 90.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of the d181e variant of catalase hpii2 from e. coli

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0