Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP76655
DateThu Jan 5 12:25:14 GMT 2012
Unique Job ID249b8d5f9bb9944f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 92%
757 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGNIGANPVIIIGCASAYAVEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINN
Secondary structure 
SS confidence 
Disorder  ?????
???
?????????
?
?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  KRTPIHLDLQWVLIDNQTAVCVTPEQLTLLGFTDEFIEKTQQNLIDGCYPIEKEKQITTY
Secondary structure 
SS confidence 
Disorder 
???
???????
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LDKGKMQLSISAPQAWLKYKDANWTPPELWNHGIAGAFLDYNLYASHYAPHQGDNSQNIS
Secondary structure 
SS confidence 
Disorder 
?????????
????
?
??????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  SYGQAGVNLGAWRLRTDYQYDQSFNNGKSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTE
Secondary structure 
SS confidence 
Disorder 
???????????
?
??
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SSIFDSFHFSGISLKSDENMLPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGP
Secondary structure 
SS confidence 
Disorder 
????
?????????
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  FAITNLFNTLQGQLDVKVEEEDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDS
Secondary structure 
SS confidence 
Disorder 
???????
??????????
??????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQL
Secondary structure 
SS confidence 
Disorder  ?
?
?
???
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  HNQDKETGYSYRANYSKRFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTNYQNEKES
Secondary structure 
SS confidence 
Disorder  ?????????
????
???
?
????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  YIVTFNQYLESLRLNTYVSLARNTYWDASSNVNYSLSLSRDFDIGPLKNVSTSLTFSRIN
Secondary structure 
SS confidence 
Disorder 
????
?
????????
?????
??
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  WEEDNQDQLYLNISIPWGTSRTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDND
Secondary structure 
SS confidence 
Disorder  ??????
???
?????
?????????
????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  EFKDMKASLRASYQHNTENGRLYLSGTSQRDSYYSLNASWNGSFTATRHGAAFHDYSGSA
Secondary structure 
SS confidence 
Disorder  ??????
???
?????
??????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  DSRFMIDADGTEDIPLNNKRAVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVI
Secondary structure 
SS confidence 
Disorder  ??
?
????
????????
?
??
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  TTTLTEGAIGYAKLDTRKGYQIIGVIRLADGSHPPLGISVKDETSHKELGLVADGGFVYL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........790.........800.........810.........820.
Sequence  NGIQDDNKLALRWGDKSCFIQPPNSSNLTTGTAILPCISQN
Secondary structure 
SS confidence 
Disorder 
???
?????????
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 46 - 820
Aligned: 757
Modelled: 775
Confidence: 100.0%
Identity: 28%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 2vqi chain A

3D model

Region: 157 - 648
Aligned: 474
Modelled: 491
Confidence: 100.0%
Identity: 41%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 3ohn chain A

3D model

Region: 156 - 644
Aligned: 462
Modelled: 489
Confidence: 100.0%
Identity: 29%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 23 - 139
Aligned: 117
Modelled: 117
Confidence: 100.0%
Identity: 24%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 44 - 156
Aligned: 113
Modelled: 113
Confidence: 100.0%
Identity: 26%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 262 - 336
Aligned: 70
Modelled: 75
Confidence: 99.9%
Identity: 34%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 44 - 142
Aligned: 99
Modelled: 99
Confidence: 99.9%
Identity: 22%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3l48 chain B

3D model

Region: 739 - 817
Aligned: 77
Modelled: 79
Confidence: 99.7%
Identity: 38%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 2xet chain B

3D model

Region: 741 - 821
Aligned: 81
Modelled: 81
Confidence: 99.7%
Identity: 25%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 742 - 792
Aligned: 49
Modelled: 51
Confidence: 90.8%
Identity: 10%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 3mn8 chain A

3D model

Region: 742 - 792
Aligned: 50
Modelled: 51
Confidence: 88.4%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short

Phyre2

PDB 1h8l chain A domain 1

3D model

Region: 742 - 814
Aligned: 71
Modelled: 73
Confidence: 88.3%
Identity: 14%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 2nsm chain A

3D model

Region: 742 - 816
Aligned: 73
Modelled: 75
Confidence: 88.3%
Identity: 7%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 3pdg chain A

3D model

Region: 271 - 327
Aligned: 56
Modelled: 57
Confidence: 87.3%
Identity: 20%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1uwy chain A

3D model

Region: 742 - 813
Aligned: 71
Modelled: 72
Confidence: 87.3%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 3pe9 chain B

3D model

Region: 271 - 336
Aligned: 64
Modelled: 66
Confidence: 86.9%
Identity: 14%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1h8l chain A

3D model

Region: 740 - 814
Aligned: 73
Modelled: 75
Confidence: 82.9%
Identity: 14%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 1w0n chain A

3D model

Region: 246 - 324
Aligned: 79
Modelled: 79
Confidence: 82.5%
Identity: 18%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 36 carbohydrate binding module, CBM36

Phyre2

PDB 3pe9 chain D

3D model

Region: 271 - 336
Aligned: 64
Modelled: 66
Confidence: 76.7%
Identity: 11%
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1d2p chain A

3D model

Region: 274 - 331
Aligned: 58
Modelled: 58
Confidence: 75.8%
Identity: 12%
PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus

Phyre2
1
c3rfzB_
2
c2vqiA_
3
c3ohnA_
4
d3bwud1
5
d1zdva1
6
c3fcgB_
7
d1zdxa1
8
c3l48B_
9
c2xetB_
10
d1uwya1
11
c3mn8A_
12
d1h8la1
13
c2nsmA_
14
c3pdgA_
15
c1uwyA_
16
c3pe9B_
17
c1h8lA_
18
d1w0na_
19
c3pe9D_
20
c1d2pA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_
100.0 28 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c2vqiA_
100.0 41 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
3c3ohnA_
100.0 29 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
4d3bwud1
100.0 24 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5d1zdva1
100.0 26 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
6c3fcgB_
99.9 34 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
7d1zdxa1
99.9 22 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
8c3l48B_
99.7 38 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
9c2xetB_
99.7 25 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
10d1uwya1
90.8 10 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
11c3mn8A_
88.4 12 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
12d1h8la1
88.3 14 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
13c2nsmA_
88.3 7 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
14c3pdgA_
87.3 20 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
15c1uwyA_
87.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
16c3pe9B_
86.9 14 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
17c1h8lA_
82.9 14 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
18d1w0na_
82.5 18 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
19c3pe9D_
76.7 11 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
20c1d2pA_
75.8 12 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
21c1u00A_
not modelled 75.6 22 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
22c3dpqE_
not modelled 72.4 22 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
23c2op6A_
not modelled 71.9 20 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
24c3n8eA_
not modelled 70.8 24 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
25c3d33B_
not modelled 70.5 7 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
26c1bprA_
not modelled 67.2 20 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
27c3pe9A_
not modelled 66.8 11 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
28c3pe9C_
not modelled 66.8 11 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
29c2r32A_
not modelled 58.6 25 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
30d1ci3m2
not modelled 58.2 16 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
31d1u00a2
not modelled 57.6 22 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
32c3dqgC_
not modelled 57.3 24 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
33c3e8vA_
not modelled 56.1 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
34d1yuwa1
not modelled 55.1 22 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
35d1v8ha1
not modelled 53.3 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
36d2ag4a1
not modelled 53.2 9 Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
37d1dkza2
not modelled 51.3 22 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
38c3k1dA_
not modelled 47.1 16 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
39d1e2wa2
not modelled 46.2 18 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
40c3c12A_
not modelled 39.1 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
41c2oxgE_
not modelled 31.5 15 PDB header:transport protein
Chain: E: PDB Molecule:soxz protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
42d2vzsa4
not modelled 29.3 22 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
43d1cxla1
not modelled 27.9 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
44c2x5pA_
not modelled 27.4 18 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
45c1e2vB_
not modelled 24.8 17 PDB header:electron transport proteins
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: n153q mutant of cytochrome f from chlamydomonas reinhardtii
46d2je8a4
not modelled 22.5 11 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
47c2jxmB_
not modelled 21.9 15 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome f;
PDBTitle: ensemble of twenty structures of the prochlorothrix2 hollandica plastocyanin- cytochrome f complex
48c1q90A_
not modelled 21.8 19 PDB header:photosynthesis
Chain: A: PDB Molecule:apocytochrome f;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
49c3rghA_
not modelled 21.1 19 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
50c3bryB_
not modelled 21.0 17 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
51d1wlha1
not modelled 20.5 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
52d2dj4a1
not modelled 20.3 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
53d2bp3a1
not modelled 19.8 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
54c2xk0A_
not modelled 19.8 23 PDB header:transcription
Chain: A: PDB Molecule:polycomb protein pcl;
PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl)
55c3iswA_
not modelled 19.3 31 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
56c2ww8A_
not modelled 18.5 12 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
57c2pz4A_
not modelled 18.4 14 PDB header:cell adhesion
Chain: A: PDB Molecule:protein gbs052;
PDBTitle: crystal structure of spab (gbs52), the minor pilin in gram-positive2 pathogen streptococcus agalactiae
58c2eqjA_
not modelled 18.2 33 PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
59c3b9eA_
not modelled 18.1 7 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
60d2a9da1
not modelled 17.8 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Molybdenum-containing oxidoreductases-like dimerisation domain
61d2di8a1
not modelled 17.3 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
62d1edqa1
not modelled 17.2 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
63d2dmca1
not modelled 16.8 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
64c2k78A_
not modelled 16.6 12 PDB header:heme-binding protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: solution structure of the isdc neat domain bound to zinc2 protoporphyrin
65d1pfsa_
not modelled 16.1 24 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Phage ssDNA-binding proteins
66d2o6pa1
not modelled 16.0 12 Fold:Immunoglobulin-like beta-sandwich
Superfamily:NEAT domain-like
Family:NEAT domain
67c2o6pA_
not modelled 15.3 12 PDB header:transport protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: crystal structure of the heme-isdc complex
68d2gr7a1
not modelled 14.6 22 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
69c2gr7C_
not modelled 14.6 22 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
70c2brqB_
not modelled 14.6 31 PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
71d2dica1
not modelled 14.1 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
72d2w0pa1
not modelled 14.0 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
73d2vmha1
not modelled 13.8 10 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:NPCBM-like
74d1qfha1
not modelled 13.7 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
75c2ds4A_
not modelled 13.6 19 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
76c3brzA_
not modelled 13.5 15 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
77d1psoe_
not modelled 13.4 10 Fold:Acid proteases
Superfamily:Acid proteases
Family:Pepsin-like
78c3lemA_
not modelled 13.3 22 PDB header:hydrolase
Chain: A: PDB Molecule:fructosyltransferase;
PDBTitle: crystal structure of fructosyltransferase (d191a) from a. japonicus in2 complex with nystose
79c2jf1A_
not modelled 13.1 31 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
80d2d7oa1
not modelled 13.0 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
81d2e9ia1
not modelled 13.0 10 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
82d1qfha2
not modelled 13.0 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
83c3nm7C_
not modelled 12.8 16 PDB header:nucleic acid binding protein
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of borrelia burgdorferi pur-alpha
84d2dmba1
not modelled 12.2 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
85d1yq2a3
not modelled 12.1 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
86d2diaa1
not modelled 12.0 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
87d1v05a_
not modelled 11.9 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
88c2e5pA_
not modelled 11.9 22 PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
89c2k7pA_
not modelled 11.5 25 PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: filamin a ig-like domains 16-17
90d2diba1
not modelled 11.3 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
91d2je6i3
not modelled 11.3 25 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
92c2brqA_
not modelled 11.2 31 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
93c2w0pB_
not modelled 11.2 31 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
94c3iswB_
not modelled 11.2 31 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
95c1ksrA_
not modelled 11.2 13 PDB header:actin binding protein
Chain: A: PDB Molecule:gelation factor;
PDBTitle: the repeating segments of the f-actin cross-linking2 gelation factor (abp-120) have an immunoglobulin fold, nmr,3 20 structures
96c2e9jA_
not modelled 11.2 19 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
97d2d7ma1
not modelled 10.9 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
98c3cnkB_
not modelled 10.9 25 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the dimerization domain of human2 filamin a
99c2vnvC_
not modelled 10.7 11 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0