Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A8I5
DateThu Jan 5 11:07:56 GMT 2012
Unique Job ID231ed9605d3a35f7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3dxyA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam
Confidence and coverage
Confidence:100.0% Coverage: 85%
203 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPVMGVEFSEDMLDFPALF
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Disorder  ?????????????????



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   .........70.........80.........90.........100.........110.........120
Sequence  GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCH
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   .........130.........140.........150.........160.........170.........180
Sequence  DAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD
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   .........190.........200.........210.........220.........230.........
Sequence  WEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK
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Disorder 























?































??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3dxy chain A

3D model

Region: 37 - 239
Aligned: 203
Modelled: 203
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam

Phyre2

PDB 1yzh chain A domain 1

3D model

Region: 33 - 236
Aligned: 203
Modelled: 204
Confidence: 100.0%
Identity: 26%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: TrmB-like

Phyre2

PDB 2fca chain A domain 1

3D model

Region: 36 - 237
Aligned: 201
Modelled: 202
Confidence: 100.0%
Identity: 22%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: TrmB-like

Phyre2

PDB 3ckk chain A

3D model

Region: 48 - 239
Aligned: 181
Modelled: 181
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of human methyltransferase-like protein 1

Phyre2

PDB 2vdu chain E

3D model

Region: 48 - 238
Aligned: 173
Modelled: 191
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex

Phyre2

PDB 3p2k chain A

3D model

Region: 56 - 222
Aligned: 162
Modelled: 167
Confidence: 99.9%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of an antibiotic related methyltransferase

Phyre2

PDB 1yb2 chain A domain 1

3D model

Region: 62 - 238
Aligned: 158
Modelled: 177
Confidence: 99.8%
Identity: 16%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: tRNA(1-methyladenosine) methyltransferase-like

Phyre2

PDB 1yb2 chain A

3D model

Region: 62 - 238
Aligned: 158
Modelled: 177
Confidence: 99.8%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.

Phyre2

PDB 3g5t chain A

3D model

Region: 61 - 179
Aligned: 110
Modelled: 119
Confidence: 99.8%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast

Phyre2

PDB 3mq2 chain A

3D model

Region: 56 - 179
Aligned: 117
Modelled: 124
Confidence: 99.8%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:16s rrna methyltransferase;
PDBTitle: crystal structure of 16s rrna methyltranferase kamb

Phyre2

PDB 3e05 chain B

3D model

Region: 56 - 196
Aligned: 127
Modelled: 141
Confidence: 99.8%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15

Phyre2

PDB 3mti chain A

3D model

Region: 62 - 239
Aligned: 148
Modelled: 153
Confidence: 99.8%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a

Phyre2

PDB 1o54 chain A

3D model

Region: 62 - 238
Aligned: 150
Modelled: 164
Confidence: 99.8%
Identity: 17%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: tRNA(1-methyladenosine) methyltransferase-like

Phyre2

PDB 1m6y chain A domain 2

3D model

Region: 56 - 238
Aligned: 166
Modelled: 183
Confidence: 99.8%
Identity: 17%
Fold: S-adenosyl-L-methionine-dependent methyltransferases
Superfamily: S-adenosyl-L-methionine-dependent methyltransferases
Family: MraW-like putative methyltransferases

Phyre2

PDB 2fk8 chain A

3D model

Region: 32 - 179
Aligned: 121
Modelled: 134
Confidence: 99.8%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine

Phyre2

PDB 3eey chain J

3D model

Region: 62 - 239
Aligned: 161
Modelled: 161
Confidence: 99.7%
Identity: 12%
PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum

Phyre2

PDB 3mb5 chain A

3D model

Region: 62 - 239
Aligned: 161
Modelled: 171
Confidence: 99.7%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine

Phyre2

PDB 3mgg chain B

3D model

Region: 32 - 179
Aligned: 124
Modelled: 135
Confidence: 99.7%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 mazei

Phyre2

PDB 3e7p chain A

3D model

Region: 62 - 179
Aligned: 105
Modelled: 118
Confidence: 99.7%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482

Phyre2

PDB 2pwy chain B

3D model

Region: 62 - 239
Aligned: 152
Modelled: 175
Confidence: 99.7%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a m1a58 trna methyltransferase

Phyre2

PDB 2ipx chain A

3D model

Region: 4 - 179
Aligned: 150
Modelled: 148
Confidence: 99.6%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:rrna 2'-o-methyltransferase fibrillarin;
PDBTitle: human fibrillarin

Phyre2
1

c3dxyA_
2

d1yzha1
3

d2fcaa1
4

c3ckkA_
5

c2vduE_
6

c3p2kA_
7

d1yb2a1
8

c1yb2A_
9

c3g5tA_
10

c3mq2A_
11

c3e05B_
12

c3mtiA_
13

d1o54a_
14

d1m6ya2
15

c2fk8A_
16

c3eeyJ_
17

c3mb5A_
18

c3mggB_
19

c3e7pA_
20

c2pwyB_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3dxyA_



100.0 100 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of ectrmb in complex with sam
2d1yzha1



100.0 26 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
3d2fcaa1



100.0 22 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
4c3ckkA_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: crystal structure of human methyltransferase-like protein 1
5c2vduE_



100.0 23 PDB header:transferase
Chain: E: PDB Molecule:trna (guanine-n(7)-)-methyltransferase;
PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex
6c3p2kA_



99.9 14 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of an antibiotic related methyltransferase
7d1yb2a1



99.8 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
8c1yb2A_



99.8 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0852;
PDBTitle: structure of a putative methyltransferase from thermoplasma2 acidophilum.
9c3g5tA_



99.8 12 PDB header:transferase
Chain: A: PDB Molecule:trans-aconitate 3-methyltransferase;
PDBTitle: crystal structure of trans-aconitate 3-methyltransferase2 from yeast
10c3mq2A_



99.8 20 PDB header:transferase
Chain: A: PDB Molecule:16s rrna methyltransferase;
PDBTitle: crystal structure of 16s rrna methyltranferase kamb
11c3e05B_



99.8 13 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y c5,15-methyltransferase (decarboxylating);
PDBTitle: crystal structure of precorrin-6y c5,15-methyltransferase from2 geobacter metallireducens gs-15
12c3mtiA_



99.8 13 PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: the crystal structure of a rrna methylase from streptococcus2 thermophilus to 1.95a
13d1o54a_



99.8 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
14d1m6ya2



99.8 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:MraW-like putative methyltransferases
15c2fk8A_



99.8 12 PDB header:transferase
Chain: A: PDB Molecule:methoxy mycolic acid synthase 4;
PDBTitle: crystal structure of hma (mmaa4) from mycobacterium tuberculosis2 complexed with s-adenosylmethionine
16c3eeyJ_



99.7 12 PDB header:transferase
Chain: J: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of putative rrna-methylase from clostridium2 thermocellum
17c3mb5A_



99.7 18 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of p. abyssi trna m1a58 methyltransferase in complex2 with s-adenosyl-l-methionine
18c3mggB_



99.7 22 PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyl transferase from methanosarcina2 mazei
19c3e7pA_



99.7 13 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of of putative methyltransferase from bacteroides2 vulgatus atcc 8482
20c2pwyB_



99.7 16 PDB header:transferase
Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase;
PDBTitle: crystal structure of a m1a58 trna methyltransferase
21d1xvaa_



not modelled 99.7 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
22c3bkxB_



not modelled 99.7 22 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of cyclopropane-fatty-acyl-phospholipid synthase-2 like protein (yp_807781.1) from lactobacillus casei atcc 334 at 1.853 a resolution
23c3ku1E_



not modelled 99.7 10 PDB header:transferase
Chain: E: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of streptococcus pneumoniae sp1610, a2 putative trna (m1a22) methyltransferase, in complex with s-3 adenosyl-l-methionine
24d1r74a_



not modelled 99.7 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
25c3gnlB_



not modelled 99.7 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein, duf633, lmof2365_1472;
PDBTitle: structure of uncharacterized protein (lmof2365_1472) from2 listeria monocytogenes serotype 4b
26c2gpyB_



not modelled 99.7 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of putative o-methyltransferase from bacillus2 halodurans
27d2b3ta1



not modelled 99.7 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
28c3lecA_



not modelled 99.7 12 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:nadb-rossmann superfamily protein;
PDBTitle: the crystal structure of a protein in the nadb-rossmann2 superfamily from streptococcus agalactiae to 1.8a
29d1kpga_



not modelled 99.7 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
30c2yvlB_



not modelled 99.7 16 PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus
31d1zx0a1



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
32d1l1ea_



not modelled 99.7 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
33c3f4kA_



not modelled 99.7 12 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a probable methyltransferase from2 bacteroides thetaiotaomicron. northeast structural3 genomics target btr309.
34d2fk8a1



not modelled 99.7 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
35d2o57a1



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
36c2ozvA_



not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein atu0636;
PDBTitle: crystal structure of a predicted o-methyltransferase, protein atu6362 from agrobacterium tumefaciens.
37d1i9ga_



not modelled 99.7 19 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
38c1vl5B_



not modelled 99.7 12 PDB header:transferase
Chain: B: PDB Molecule:unknown conserved protein bh2331;
PDBTitle: crystal structure of a putative methyltransferase (bh2331) from2 bacillus halodurans c-125 at 1.95 a resolution
39d1vl5a_



not modelled 99.7 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
40c3g8aF_



not modelled 99.7 18 PDB header:transferase
Chain: F: PDB Molecule:ribosomal rna small subunit methyltransferase g;
PDBTitle: t. thermophilus 16s rrna g527 methyltransferase in complex with adohcy2 in space group p61
41d1ri5a_



not modelled 99.7 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:mRNA cap (Guanine N-7) methyltransferase
42d1tpya_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
43c1z3cA_



not modelled 99.7 13 PDB header:transferase
Chain: A: PDB Molecule:mrna capping enzyme;
PDBTitle: encephalitozooan cuniculi mrna cap (guanine-n7)2 methyltransferasein complexed with azoadomet
44d1xdza_



not modelled 99.7 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
45d1p91a_



not modelled 99.7 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase RlmA
46c2pjdA_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase c;
PDBTitle: crystal structure of 16s rrna methyltransferase rsmc
47d1l3ia_



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Precorrin-6Y methyltransferase (CbiT)
48c3hm2G_



not modelled 99.7 12 PDB header:transferase
Chain: G: PDB Molecule:precorrin-6y c5,15-methyltransferase;
PDBTitle: crystal structure of putative precorrin-6y c5,15-2 methyltransferase targeted domain from corynebacterium3 diphtheriae
49d1xcla_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
50d1kpia_



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Mycolic acid cyclopropane synthase
51d1xxla_



not modelled 99.7 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:UbiE/COQ5-like
52c2yr0A_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha0223;
PDBTitle: crystal structure of hypothetical methyltransferase ttha0223 from2 thermus thermophilus hb8
53d1d2ha_



not modelled 99.7 10 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glycine N-methyltransferase
54d1jsxa_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Glucose-inhibited division protein B (GidB)
55d2ex4a1



not modelled 99.7 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
56d1dl5a1



not modelled 99.7 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
57d1dusa_



not modelled 99.7 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical protein MJ0882
58c2yxdA_



not modelled 99.7 16 PDB header:transferase
Chain: A: PDB Molecule:probable cobalt-precorrin-6y c(15)-methyltransferase
PDBTitle: crystal structure of cobalamin biosynthesis precorrin 8w decarboxylase2 (cbit)
59c3lpmA_



not modelled 99.7 13 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase small domain protein2 from listeria monocytogenes
60d1p1ca_



not modelled 99.7 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Guanidinoacetate methyltransferase
61c3ocjA_



not modelled 99.7 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis
62c3evzA_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal strucure of methyltransferase from pyrococcus furiosus
63c3bgvC_



not modelled 99.7 13 PDB header:transferase
Chain: C: PDB Molecule:mrna cap guanine-n7 methyltransferase;
PDBTitle: crystal structure of mrna cap guanine-n7 methyltransferase2 in complex with sah
64d1nt2a_



not modelled 99.7 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
65c3njrB_



not modelled 99.7 15 PDB header:transferase
Chain: B: PDB Molecule:precorrin-6y methylase;
PDBTitle: crystal structure of c-terminal domain of precorrin-6y c5,15-2 methyltransferase from rhodobacter capsulatus
66c3lccA_



not modelled 99.6 14 PDB header:transferase
Chain: A: PDB Molecule:putative methyl chloride transferase;
PDBTitle: structure of a sam-dependent halide methyltransferase from arabidopsis2 thaliana
67c3g07C_



not modelled 99.6 12 PDB header:transferase
Chain: C: PDB Molecule:7sk snrna methylphosphate capping enzyme;
PDBTitle: methyltransferase domain of human bicoid-interacting protein2 3 homolog (drosophila)
68d2gh1a1



not modelled 99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:BC2162-like
69c3ggdA_



not modelled 99.6 9 PDB header:transferase
Chain: A: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase (yp_325210.1)2 from anabaena variabilis atcc 29413 at 2.11 a resolution
70d2bzga1



not modelled 99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
71d1g8sa_



not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
72c2yxlA_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:450aa long hypothetical fmu protein;
PDBTitle: crystal structure of ph0851
73d1nkva_



not modelled 99.6 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Hypothetical Protein YjhP
74c2ipxA_



99.6 12 PDB header:transferase
Chain: A: PDB Molecule:rrna 2'-o-methyltransferase fibrillarin;
PDBTitle: human fibrillarin
75d1susa1



not modelled 99.6 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:COMT-like
76c3c3yB_



not modelled 99.6 18 PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of pfomt, phenylpropanoid and flavonoid o-2 methyltransferase from m. crystallinum
77c2yxeB_



not modelled 99.6 21 PDB header:transferase
Chain: B: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of l-isoaspartyl protein carboxyl methyltranferase
78c3m70A_



not modelled 99.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein tehb homolog;
PDBTitle: crystal structure of tehb from haemophilus influenzae
79d1jqea_



not modelled 99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Histamine methyltransferase
80c3dmgA_



not modelled 99.6 18 PDB header:transferase
Chain: A: PDB Molecule:probable ribosomal rna small subunit methyltransferase;
PDBTitle: t. thermophilus 16s rrna n2 g1207 methyltransferase (rsmc) in complex2 with adohcy
81c3tfwB_



not modelled 99.6 14 PDB header:transferase
Chain: B: PDB Molecule:putative o-methyltransferase;
PDBTitle: crystal structure of a putative o-methyltransferase from klebsiella2 pneumoniae
82c3dlcA_



not modelled 99.6 16 PDB header:transferase
Chain: A: PDB Molecule:putative s-adenosyl-l-methionine-dependent
PDBTitle: crystal structure of a putative s-adenosyl-l-methionine-dependent2 methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 a3 resolution
83d2b25a1



not modelled 99.6 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:tRNA(1-methyladenosine) methyltransferase-like
84d1pjza_



not modelled 99.6 12 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Thiopurine S-methyltransferase
85c3grzA_



not modelled 99.6 11 PDB header:transferase
Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase;
PDBTitle: crystal structure of ribosomal protein l11 methylase from2 lactobacillus delbrueckii subsp. bulgaricus
86d1nv8a_



not modelled 99.6 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
87c3fpjA_



not modelled 99.6 12 PDB header:biosynthetic protein, transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of e81q mutant of mtnas in complex with s-2 adenosylmethionine
88c3cc8A_



not modelled 99.6 12 PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of a putative methyltransferase (bce_1332) from2 bacillus cereus atcc 10987 at 1.64 a resolution
89c3ntvB_



not modelled 99.6 17 PDB header:transferase
Chain: B: PDB Molecule:mw1564 protein;
PDBTitle: crystal structure of a putative caffeoyl-coa o-methyltransferase from2 staphylococcus aureus
90c3lbfC_



not modelled 99.6 17 PDB header:transferase
Chain: C: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: crystal structure of protein l-isoaspartyl methyltransferase from2 escherichia coli
91c3id5F_



not modelled 99.6 15 PDB header:transferase/ribosomal protein/rna
Chain: F: PDB Molecule:fibrillarin-like rrna/trna 2'-o-methyltransferase;
PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna
92c3gjyA_



not modelled 99.6 14 PDB header:transferase
Chain: A: PDB Molecule:spermidine synthase;
PDBTitle: crystal structure of a probable spermidine synthase from2 corynebacterium glutamicum atcc 13032
93c1wxwA_



not modelled 99.6 17 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ttha1280;
PDBTitle: crystal structure of tt1595, a putative sam-dependent2 methyltransferase from thermus thermophillus hb8
94d1jg1a_



not modelled 99.6 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
95d1ve3a1



not modelled 99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CAC2371-like
96d1vbfa_



not modelled 99.6 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
97d2as0a2



not modelled 99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
98c3jwgA_



not modelled 99.6 13 PDB header:transferase
Chain: A: PDB Molecule:methyltransferase type 12;
PDBTitle: crystal structure analysis of the methyltransferase domain2 of bacterial-cthen1-c
99c3cggB_



not modelled 99.6 11 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of tehb-like sam-dependent methyltransferase2 (np_600671.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.00 a resolution
100d1sqga2



not modelled 99.6 13 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:NOL1/NOP2/sun
101d2igta1



not modelled 99.6 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
102c1dl5A_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase;
PDBTitle: protein-l-isoaspartate o-methyltransferase
103c3p9nA_



not modelled 99.6 16 PDB header:transferase
Chain: A: PDB Molecule:possible methyltransferase (methylase);
PDBTitle: rv2966c of m. tuberculosis is a rsmd-like methyltransferase
104d1wxxa2



not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:hypothetical RNA methyltransferase
105c3bgdB_



not modelled 99.6 15 PDB header:transferase
Chain: B: PDB Molecule:thiopurine s-methyltransferase;
PDBTitle: thiopurine s-methyltransferase
106d1i1na_



not modelled 99.6 15 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Protein-L-isoaspartyl O-methyltransferase
107c3ujcA_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:phosphoethanolamine n-methyltransferase;
PDBTitle: phosphoethanolamine methyltransferase mutant (h132a) from plasmodium2 falciparum in complex with phosphocholine
108d1g8aa_



not modelled 99.6 16 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
109d1prya_



not modelled 99.6 17 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Fibrillarin homologue
110c2pbfA_



not modelled 99.6 16 PDB header:transferase
Chain: A: PDB Molecule:protein-l-isoaspartate o-methyltransferase beta-aspartate
PDBTitle: crystal structure of a putative protein-l-isoaspartate o-2 methyltransferase beta-aspartate methyltransferase (pcmt) from3 plasmodium falciparum in complex with s-adenosyl-l-homocysteine
111c3e23A_



not modelled 99.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rpa2492;
PDBTitle: crystal structure of the rpa2492 protein in complex with2 sam from rhodopseudomonas palustris, northeast structural3 genomics consortium target rpr299
112c3c0kB_



not modelled 99.6 10 PDB header:transferase
Chain: B: PDB Molecule:upf0064 protein yccw;
PDBTitle: crystal structure of a ribosomal rna methyltranferase
113c3ofkA_



not modelled 99.6 15 PDB header:transferase
Chain: A: PDB Molecule:nodulation protein s;
PDBTitle: crystal structure of n-methyltransferase nods from bradyrhizobium2 japonicum wm9 in complex with s-adenosyl-l-homocysteine (sah)
114c3duwB_



not modelled 99.6 16 PDB header:transferase
Chain: B: PDB Molecule:o-methyltransferase, putative;
PDBTitle: crystal structural analysis of the o-methyltransferase from2 bacillus cereus in complex sah
115c1sqgA_



not modelled 99.6 14 PDB header:transferase
Chain: A: PDB Molecule:sun protein;
PDBTitle: the crystal structure of the e. coli fmu apoenzyme at 1.652 a resolution
116c3lcvB_



not modelled 99.6 13 PDB header:transferase
Chain: B: PDB Molecule:sisomicin-gentamicin resistance methylase sgm;
PDBTitle: crystal structure of antibiotic related methyltransferase
117c3cbgA_



not modelled 99.6 21 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: functional and structural characterization of a2 cationdependent o-methyltransferase from the3 cyanobacterium synechocystis sp. strain pcc 6803
118c3dtnA_



not modelled 99.6 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative methyltransferase mm_2633;
PDBTitle: crystal structure of putative methyltransferase-mm_26332 from methanosarcina mazei .
119c3dr5A_



not modelled 99.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative o-methyltransferase;
PDBTitle: crystal structure of the q8nrd3_corgl protein from2 corynebacterium glutamicum. northeast structural genomics3 consortium target cgr117.
120d2nxca1



not modelled 99.5 20 Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Ribosomal protein L11 methyltransferase PrmA

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0