Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	N	V	E	L	S	P	A	T	R	W	G	M	I	A	T	G	L	L	Q	G	L	V	C	Y	L	L	I	A	W	L	S	G	K	N	H	S	W	I	V	Y	G	V	P	A	T	V	A	F	S	S	V	L	L	F	S	V	I	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?			?	?																																															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	K	Q	K	R	L	W	G	W	L	A	L	V	F	I	A	T	L	G	M	S	G	W	L	K	W	Q	T	D	G	M	N	P	W	R	A	E	K	A	L	W	D	F	G	C	Y	L	L	L	M	A	M	L	L	L	P	W	I	Q	Q
Secondary structure
SS confidence
Disorder		?																														?	?	?	?	?			?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	L	R	I	R	N	D	S	S	R	Y	R	Y	F	Y	Q	S	V	W	H	N	V	L	I	L	L	V	I	F	L	A	N	G	L	T	W	L	V	L	L	L	W	S	E	L	F	K	L	V	G	I	T	F	F	N	T	L	F	F	A
Secondary structure
SS confidence
Disorder				?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	D	W	F	I	Y	L	T	L	G	L	V	T	A	L	A	V	I	L	A	R	T	Q	S	R	L	I	D	S	I	Q	K	L	F	T	L	I	A	T	G	L	L	P	L	V	S	L	L	T	L	M	F	I	I	T	L	P	F	T	G
Secondary structure
SS confidence
Disorder																				?	?	?	?		?																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	S	A	I	S	R	H	I	S	A	A	G	L	L	L	T	L	A	F	L	Q	L	I	L	M	A	I	V	R	D	P	Q	K	A	S	L	P	W	T	G	P	L	R	C	L	I	K	T	A	L	L	V	A	P	L	Y	V	F	V	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?																									?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	W	A	L	W	L	R	V	A	Q	Y	G	W	T	V	D	R	L	Q	G	V	L	A	V	L	V	L	L	V	W	S	L	G	Y	F	V	S	I	V	W	R	K	G	Q	N	P	V	V	L	Q	G	K	V	N	L	A	V	S	L	L
Secondary structure
SS confidence
Disorder																																								?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	L	V	I	L	V	L	L	N	S	P	V	L	D	S	M	R	I	S	V	N	S	H	M	A	R	Y	Q	S	G	K	N	T	S	D	Q	V	T	I	Y	M	L	E	Q	S	G	R	Y	G	R	A	A	L	E	S	L	K	S	D	A
Secondary structure
SS confidence
Disorder																														?	?	?	?	?																									?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		G	F	M	K	D	P	K	R	A	R	D	L	L	M	A	L	D	G	E	Q	H	L	Q	Q	Q	V	S	E	K	V	L	A	D	N	V	L	I	A	P	G	S	V	K	P	D	A	T	F	W	S	A	L	I	Q	D	R	Y	N	V	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?				?	?				?	?	?	?	?		?											?	?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		T	C	I	E	K	D	A	C	V	L	V	E	Q	D	L	N	S	D	G	Q	A	E	R	I	L	F	A	F	N	D	D	R	V	I	V	Y	G	F	D	S	D	R	K	E	W	D	A	L	D	M	S	L	L	P	N	E	I	T	K	E
Secondary structure
SS confidence
Disorder		?		?																																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Sequence		K	L	L	T	A	A	K	D	G	K	L	G	T	K	P	K	A	W	R	D	L	V	V	D	G	E	R	L	N	V	N	L	N	E
Secondary structure
SS confidence
Disorder										?				?	?		?	?											?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2zux chain A Region: 481 - 517 Aligned: 37 Modelled: 37 Confidence: 84.5% Identity: 16% PDB header:lyase Chain: A: PDB Molecule:yesw protein; PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose Phyre2 PDB 2zuy chain A Region: 481 - 517 Aligned: 37 Modelled: 37 Confidence: 81.8% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:yesx protein; PDBTitle: crystal structure of exotype rhamnogalacturonan lyase yesx Phyre2 PDB 2c4d chain A Region: 486 - 510 Aligned: 25 Modelled: 25 Confidence: 68.2% Identity: 24% PDB header:lectin Chain: A: PDB Molecule:psathyrella velutina lectin pvl; PDBTitle: 2.6a crystal structure of psathyrella velutina lectin in2 complex with n-acetylglucosamine Phyre2 PDB 3fcs chain A Region: 486 - 564 Aligned: 79 Modelled: 79 Confidence: 58.4% Identity: 16% PDB header:cell adhesion/blood clotting Chain: A: PDB Molecule:integrin, alpha 2b; PDBTitle: structure of complete ectodomain of integrin aiibb3 Phyre2 PDB 1k1x chain A domain 2 Region: 492 - 523 Aligned: 29 Modelled: 32 Confidence: 53.6% Identity: 24% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: 4-alpha-glucanotransferase, C-terminal domain Phyre2 PDB 3od9 chain B Region: 490 - 505 Aligned: 16 Modelled: 16 Confidence: 49.5% Identity: 50% PDB header:hydrolase inhibitor Chain: B: PDB Molecule:putative exported protein; PDBTitle: crystal structure of plii-ah, periplasmic lysozyme inhibitor of i-type2 lysozyme from aeromonas hydrophyla Phyre2 PDB 1ig4 chain A Region: 382 - 399 Aligned: 18 Modelled: 18 Confidence: 22.4% Identity: 11% Fold: DNA-binding domain Superfamily: DNA-binding domain Family: Methyl-CpG-binding domain, MBD Phyre2 PDB 2xq2 chain A Region: 10 - 162 Aligned: 146 Modelled: 153 Confidence: 21.3% Identity: 8% PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt Phyre2 PDB 2k2d chain A Region: 556 - 571 Aligned: 16 Modelled: 16 Confidence: 20.9% Identity: 13% PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c Phyre2 PDB 2bbj chain B Region: 279 - 344 Aligned: 55 Modelled: 66 Confidence: 19.1% Identity: 13% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 2rrf chain A Region: 478 - 505 Aligned: 24 Modelled: 28 Confidence: 18.2% Identity: 25% PDB header:unknown function Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21; PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21 Phyre2 PDB 1jv2 chain A domain 4 Region: 486 - 519 Aligned: 34 Modelled: 34 Confidence: 17.1% Identity: 26% Fold: 7-bladed beta-propeller Superfamily: Integrin alpha N-terminal domain Family: Integrin alpha N-terminal domain Phyre2 PDB 2q14 chain A Region: 384 - 419 Aligned: 36 Modelled: 35 Confidence: 16.9% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase; PDBTitle: crystal structure of phosphohydrolase (bt4208) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution Phyre2 PDB 1mv3 chain A Region: 494 - 526 Aligned: 31 Modelled: 31 Confidence: 16.4% Identity: 29% PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc Phyre2 PDB 3f2e chain A Region: 308 - 319 Aligned: 12 Modelled: 12 Confidence: 16.0% Identity: 42% PDB header:viral protein Chain: A: PDB Molecule:sirv coat protein; PDBTitle: crystal structure of yellowstone sirv coat protein c-2 terminus Phyre2 PDB 1qus chain A Region: 491 - 500 Aligned: 10 Modelled: 10 Confidence: 15.7% Identity: 30% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 3dd7 chain A Region: 353 - 406 Aligned: 53 Modelled: 54 Confidence: 14.3% Identity: 11% PDB header:ribosome inhibitor Chain: A: PDB Molecule:death on curing protein; PDBTitle: structure of doch66y in complex with the c-terminal domain of phd Phyre2 PDB 2o6i chain A Region: 384 - 425 Aligned: 42 Modelled: 42 Confidence: 13.6% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:hd domain protein; PDBTitle: structure of an enterococcus faecalis hd domain phosphohydrolase Phyre2 PDB 2o6i chain A domain 1 Region: 384 - 425 Aligned: 42 Modelled: 42 Confidence: 13.6% Identity: 17% Fold: HD-domain/PDEase-like Superfamily: HD-domain/PDEase-like Family: HD domain Phyre2 PDB 1s8k chain A Region: 309 - 317 Aligned: 9 Modelled: 9 Confidence: 13.4% Identity: 56% PDB header:toxin Chain: A: PDB Molecule:toxin bmkk4; PDBTitle: solution structure of bmkk4, a novel potassium channel2 blocker from scorpion buthus martensii karsch, 253 structures Phyre2 1 c2zuxA_ 2 c2zuyA_ 3 c2c4dA_ 4 c3fcsA_ 5 d1k1xa2 6 c3od9B_ 7 d1ig4a_ 8 c2xq2A_ 9 c2k2dA_ 10 c2bbjB_ 11 c2rrfA_ 12 d1jv2a4 13 c2q14A_ 14 c1mv3A_ 15 c3f2eA_ 16 d1qusa_ 17 c3dd7A_ 18 c2o6iA_ 19 d2o6ia1 20 c1s8kA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2zuxA_ 84.5 16 PDB header:lyase Chain: A: PDB Molecule:yesw protein; PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose 2 c2zuyA_ 81.8 14 PDB header:lyase Chain: A: PDB Molecule:yesx protein; PDBTitle: crystal structure of exotype rhamnogalacturonan lyase yesx 3 c2c4dA_ 68.2 24 PDB header:lectin Chain: A: PDB Molecule:psathyrella velutina lectin pvl; PDBTitle: 2.6a crystal structure of psathyrella velutina lectin in2 complex with n-acetylglucosamine 4 c3fcsA_ 58.4 16 PDB header:cell adhesion/blood clotting Chain: A: PDB Molecule:integrin, alpha 2b; PDBTitle: structure of complete ectodomain of integrin aiibb3 5 d1k1xa2 53.6 24 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:4-alpha-glucanotransferase, C-terminal domain 6 c3od9B_ 49.5 50 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:putative exported protein; PDBTitle: crystal structure of plii-ah, periplasmic lysozyme inhibitor of i-type2 lysozyme from aeromonas hydrophyla 7 d1ig4a_ 22.4 11 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:Methyl-CpG-binding domain, MBD 8 c2xq2A_ 21.3 8 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 9 c2k2dA_ 20.9 13 PDB header:metal binding protein Chain: A: PDB Molecule:ring finger and chy zinc finger domain- PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c 10 c2bbjB_ 19.1 13 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 11 c2rrfA_ 18.2 25 PDB header:unknown function Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21; PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21 12 d1jv2a4 17.1 26 Fold:7-bladed beta-propeller Superfamily:Integrin alpha N-terminal domain Family:Integrin alpha N-terminal domain 13 c2q14A_ 16.9 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase; PDBTitle: crystal structure of phosphohydrolase (bt4208) from bacteroides2 thetaiotaomicron vpi-5482 at 2.20 a resolution 14 c1mv3A_ 16.4 29 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:myc box dependent interacting protein 1; PDBTitle: nmr structure of the tumor suppressor bin1: alternative2 splicing in melanoma and interaction with c-myc 15 c3f2eA_ 16.0 42 PDB header:viral protein Chain: A: PDB Molecule:sirv coat protein; PDBTitle: crystal structure of yellowstone sirv coat protein c-2 terminus 16 d1qusa_ 15.7 30 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 17 c3dd7A_ 14.3 11 PDB header:ribosome inhibitor Chain: A: PDB Molecule:death on curing protein; PDBTitle: structure of doch66y in complex with the c-terminal domain of phd 18 c2o6iA_ 13.6 17 PDB header:hydrolase Chain: A: PDB Molecule:hd domain protein; PDBTitle: structure of an enterococcus faecalis hd domain phosphohydrolase 19 d2o6ia1 13.6 17 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:HD domain 20 c1s8kA_ 13.4 56 PDB header:toxin Chain: A: PDB Molecule:toxin bmkk4; PDBTitle: solution structure of bmkk4, a novel potassium channel2 blocker from scorpion buthus martensii karsch, 253 structures 21 d2ppxa1 not modelled 12.3 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 22 c2ppxA_ not modelled 12.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens 23 c2dk6A_ not modelled 12.1 10 PDB header:signaling protein Chain: A: PDB Molecule:parp11 protein; PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11) 24 c2kq5A_ not modelled 11.7 22 PDB header:unknown function Chain: A: PDB Molecule:avirulence protein; PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha 25 c1w1nA_ not modelled 11.6 10 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1; PDBTitle: the solution structure of the fatc domain of the protein2 kinase tor1 from yeast 26 c1x4rA_ not modelled 11.5 26 PDB header:apoptosis Chain: A: PDB Molecule:parp14 protein; PDBTitle: solution structure of wwe domain in parp14 protein 27 c2k0rA_ not modelled 11.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbd; PDBTitle: solution structure of the c103s mutant of the n-terminal2 domain of dsbd from neisseria meningitidis 28 d1r4ga_ not modelled 11.4 21 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Phosphoprotein XD domain Family:Phosphoprotein XD domain 29 c1k1yA_ not modelled 11.3 28 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose 30 d1nekd_ not modelled 10.9 15 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 31 c2ky8A_ not modelled 10.9 17 PDB header:transcription/dna Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2; PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence 32 c2qf9B_ not modelled 10.8 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative secreted protein; PDBTitle: crystal structure of putative secreted protein duf305 from2 streptomyces coelicolor 33 d1ujra_ not modelled 10.7 20 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 34 c1pzuH_ not modelled 10.6 14 PDB header:transcription/dna Chain: H: PDB Molecule:nuclear factor of activated t-cells, cytoplasmic PDBTitle: an asymmetric nfat1-rhr homodimer on a pseudo-palindromic,2 kappa-b site 35 c1l5gA_ not modelled 10.5 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand 36 c2d8jA_ not modelled 10.5 16 PDB header:transferase Chain: A: PDB Molecule:fyn-related kinase; PDBTitle: solution structure of the sh3 domain of fyn-related kinase 37 d1a3qa1 not modelled 10.5 18 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain 38 c2ov2O_ not modelled 10.3 27 PDB header:protein binding/transferase Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4) 39 c2dbmA_ not modelled 10.2 15 PDB header:transferase, signaling protein Chain: A: PDB Molecule:sh3-containing grb2-like protein 2; PDBTitle: solution structures of the sh3 domain of human sh3-2 containing grb2-like protein 2 40 d2r6gf1 not modelled 10.0 11 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 41 d1ofcx1 not modelled 9.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 42 c2yrvA_ not modelled 9.7 17 PDB header:transcription Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a; PDBTitle: solution structure of the rbb1nt domain of human2 rb(retinoblastoma)-binding protein 1 43 c1yn8E_ not modelled 9.7 8 PDB header:unknown function Chain: E: PDB Molecule:nap1-binding protein 2; PDBTitle: sh3 domain of yeast nbp2 44 c2yunA_ not modelled 9.5 6 PDB header:protein transport Chain: A: PDB Molecule:nostrin; PDBTitle: solution structure of the sh3 domain of human nostrin 45 d1jo8a_ not modelled 9.4 18 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 46 c3v4vA_ not modelled 9.4 24 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-4; PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1 and2 ro0505376 47 c2hw4A_ not modelled 9.4 15 PDB header:structural genomics, hydrolase Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase; PDBTitle: crystal structure of human phosphohistidine phosphatase 48 d1tyea_ not modelled 9.2 23 Fold:7-bladed beta-propeller Superfamily:Integrin alpha N-terminal domain Family:Integrin alpha N-terminal domain 49 c2x3wD_ not modelled 9.1 19 PDB header:endocytosis Chain: D: PDB Molecule:protein kinase c and casein kinase substrate in neurons PDBTitle: structure of mouse syndapin i (crystal form 2) 50 c1jrjA_ not modelled 9.0 17 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol 51 c2ed1A_ not modelled 9.0 27 PDB header:signaling protein Chain: A: PDB Molecule:130 kda phosphatidylinositol 4,5-biphosphate- PDBTitle: solution structure of the sh3 domain of 130 kda2 phosphatidylinositol 4,5-biphosphate-dependent arf1 gtpase-3 activating protein 52 c1z9zA_ not modelled 8.9 19 PDB header:structural protein Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: crystal structure of yeast sla1 sh3 domain 3 53 c2j8aA_ not modelled 8.8 25 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-4 PDBTitle: x-ray structure of the n-terminus rrm domain of set1 54 c1k8wA_ not modelled 8.7 18 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 55 c3fmyA_ not modelled 8.6 21 PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021) 56 d1sjqa_ not modelled 8.6 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 57 d1shfa_ not modelled 8.6 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 58 c2hlgA_ not modelled 8.6 67 PDB header:plant protein Chain: A: PDB Molecule:fruit-specific protein; PDBTitle: nmr solution structure of a new tomato peptide 59 c3mmlE_ not modelled 8.4 7 PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 60 c2y3nB_ not modelled 8.3 71 PDB header:structrual protein/hydrolase Chain: B: PDB Molecule:cellulosomal family-48 processive glycoside hydrolase; PDBTitle: type ii cohesin-dockerin domain from bacteroides cellolosolvens 61 d1ohzb_ not modelled 8.3 57 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 62 c2egcA_ not modelled 8.2 13 PDB header:signaling protein Chain: A: PDB Molecule:sh3 and px domain-containing protein 2a; PDBTitle: solution structure of the fifth sh3 domain from human2 kiaa0418 protein 63 d1k4us_ not modelled 8.2 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 64 d1dava_ not modelled 8.2 57 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 65 d1vlba4 not modelled 8.2 15 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 66 d1t0ha_ not modelled 8.1 6 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 67 c1jqsB_ not modelled 7.9 33 PDB header:ribosome Chain: B: PDB Molecule:elongation factor g; PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog 68 d1k8wa5 not modelled 7.9 18 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 69 d1ujya_ not modelled 7.9 10 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 70 d1q90b_ not modelled 7.8 13 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 71 d1wosa2 not modelled 7.7 15 Fold:Folate-binding domain Superfamily:Folate-binding domain Family:Aminomethyltransferase folate-binding domain 72 d1gcqa_ not modelled 7.7 23 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 73 d1u5ta2 not modelled 7.7 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 74 c1wxpA_ not modelled 7.7 12 PDB header:transport protein Chain: A: PDB Molecule:tho complex subunit 1; PDBTitle: solution structure of the death domain of nuclear matrix2 protein p84 75 d1cska_ not modelled 7.6 8 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 76 d2hw4a1 not modelled 7.6 15 Fold:PHP14-like Superfamily:PHP14-like Family:Janus/Ocnus 77 c2vn5B_ not modelled 7.6 57 PDB header:cell adhesion Chain: B: PDB Molecule:endoglucanase a; PDBTitle: the clostridium cellulolyticum dockerin displays a dual2 binding mode for its cohesin partner 78 d1r3ea2 not modelled 7.5 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 79 c1griA_ not modelled 7.4 18 PDB header:signal transduction adaptor Chain: A: PDB Molecule:growth factor bound protein 2; PDBTitle: grb2 80 d1x4da1 not modelled 7.4 29 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 81 c1gm5A_ not modelled 7.4 17 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 82 d1uj0a_ not modelled 7.4 26 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 83 d1rm6a2 not modelled 7.4 20 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 84 c2qneA_ not modelled 7.3 8 PDB header:transferase Chain: A: PDB Molecule:putative methyltransferase; PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution 85 d2fc6a1 not modelled 7.3 33 Fold:CCCH zinc finger Superfamily:CCCH zinc finger Family:CCCH zinc finger 86 c2dnuA_ not modelled 7.2 11 PDB header:structural genomics, structural protein Chain: A: PDB Molecule:sh3 multiple domains 1; PDBTitle: solution structure of rsgi ruh-061, a sh3 domain from human 87 d1m3ya1 not modelled 7.2 30 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Group II dsDNA viruses VP Family:Major capsid protein vp54 88 c3p0dD_ not modelled 7.2 57 PDB header:hydrolase Chain: D: PDB Molecule:glycoside hydrolase family 9; PDBTitle: crystal structure of a multimodular ternary protein complex from2 clostridium thermocellum 89 c1a3qA_ not modelled 7.2 18 PDB header:transcription/dna Chain: A: PDB Molecule:protein (nuclear factor kappa-b p52); PDBTitle: human nf-kappa-b p52 bound to dna 90 c1w70A_ not modelled 7.1 16 PDB header:sh3 domain Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: sh3 domain of p40phox complexed with c-terminal polyproline2 region of p47phox 91 d1efna_ not modelled 7.1 16 Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain 92 d2fb1a2 not modelled 7.1 12 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 93 c2fb1A_ not modelled 7.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 94 c3eamB_ not modelled 7.0 13 PDB header:membrane protein, transport protein Chain: B: PDB Molecule:glr4197 protein; PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel 95 d2cclb1 not modelled 7.0 57 Fold:Type I dockerin domain Superfamily:Type I dockerin domain Family:Type I dockerin domain 96 c2dl4A_ not modelled 7.0 10 PDB header:signaling protein Chain: A: PDB Molecule:protein stac; PDBTitle: solution structure of the first sh3 domain of stac protein 97 d2bvca1 not modelled 7.0 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:Glutamine synthetase, N-terminal domain Family:Glutamine synthetase, N-terminal domain 98 c2k21A_ not modelled 6.8 18 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 99 c2xmfA_ not modelled 6.8 13 PDB header:motor protein Chain: A: PDB Molecule:myosin 1e sh3; PDBTitle: myosin 1e sh3

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0