Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	Q	K	V	H	P	N	G	I	R	L	G	I	V	K	P	W	N	S	T	W	F	A	N	T	K	E	F	A	D	N	L	D	S	D	F	K	V	R	Q	Y	L	T	K	E	L	A	K	A	S	V	S	R	I	V	I	E	R	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	K	S	I	R	V	T	I	H	T	A	R	P	G	I	V	I	G	K	K	G	E	D	V	E	K	L	R	K	V	V	A	D	I	A	G	V	P	A	Q	I	N	I	A	E	V	R	K	P	E	L	D	A	K	L	V	A	D	S	I
Secondary structure
SS confidence
Disorder														?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	S	Q	L	E	R	R	V	M	F	R	R	A	M	K	R	A	V	Q	N	A	M	R	L	G	A	K	G	I	K	V	E	V	S	G	R	L	G	G	A	E	I	A	R	T	E	W	Y	R	E	G	R	V	P	L	H	T	L	R	A
Secondary structure
SS confidence
Disorder						?	?	?																														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence		D	I	D	Y	N	T	S	E	A	H	T	T	Y	G	V	I	G	V	K	V	W	I	F	K	G	E	I	L	G	G	M	A	A	V	E	Q	P	E	K	P	A	A	Q	P	K	K	Q	Q	R	K	G	R	K
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qbf chain C Region: 2 - 207 Aligned: 206 Modelled: 206 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal protein s3; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with ribosome recycling factor (rrf). this3 file contains the 30s subunit of the second 70s ribosome.4 the entire crystal structure contains two 70s ribosomes and5 is described in remark 400. Phyre2 PDB 1pnx chain C Region: 2 - 207 Aligned: 206 Modelled: 206 Confidence: 100.0% Identity: 52% PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal protein s3; PDBTitle: crystal structure of the wild type ribosome from e. coli,2 30s subunit of 70s ribosome. this file, 1pnx, contains3 only molecules of the 30s ribosomal subunit. the 50s4 subunit is in the pdb file 1pny. Phyre2 PDB 2gy9 chain C Region: 2 - 207 Aligned: 206 Modelled: 206 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal subunit protein s3; PDBTitle: structure of the 30s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 Phyre2 PDB 1hnw chain C Region: 2 - 207 Aligned: 206 Modelled: 206 Confidence: 100.0% Identity: 52% PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal protein s3; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with tetracycline Phyre2 PDB 3bbn chain C Region: 1 - 206 Aligned: 206 Modelled: 206 Confidence: 100.0% Identity: 42% PDB header:ribosome Chain: C: PDB Molecule:ribosomal protein s3; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 2xzn chain C Region: 20 - 225 Aligned: 205 Modelled: 206 Confidence: 100.0% Identity: 21% PDB header:ribosome Chain: C: PDB Molecule:kh domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Phyre2 PDB 2zkq chain C Region: 20 - 205 Aligned: 185 Modelled: 186 Confidence: 100.0% Identity: 25% PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1h chain C Region: 24 - 206 Aligned: 182 Modelled: 183 Confidence: 100.0% Identity: 25% PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 3izb chain B Region: 38 - 221 Aligned: 183 Modelled: 184 Confidence: 100.0% Identity: 26% PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein rps3 (s3p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 2uub chain C domain 2 Region: 107 - 207 Aligned: 101 Modelled: 101 Confidence: 100.0% Identity: 62% Fold: Ribosomal protein S3 C-terminal domain Superfamily: Ribosomal protein S3 C-terminal domain Family: Ribosomal protein S3 C-terminal domain Phyre2 PDB 2qal chain C domain 2 Region: 107 - 207 Aligned: 101 Modelled: 101 Confidence: 100.0% Identity: 100% Fold: Ribosomal protein S3 C-terminal domain Superfamily: Ribosomal protein S3 C-terminal domain Family: Ribosomal protein S3 C-terminal domain Phyre2 PDB 2qal chain C domain 1 Region: 2 - 106 Aligned: 105 Modelled: 105 Confidence: 100.0% Identity: 100% Fold: Alpha-lytic protease prodomain-like Superfamily: Prokaryotic type KH domain (KH-domain type II) Family: Prokaryotic type KH domain (KH-domain type II) Phyre2 PDB 2uub chain C domain 1 Region: 2 - 106 Aligned: 105 Modelled: 105 Confidence: 100.0% Identity: 43% Fold: Alpha-lytic protease prodomain-like Superfamily: Prokaryotic type KH domain (KH-domain type II) Family: Prokaryotic type KH domain (KH-domain type II) Phyre2 PDB 1wh9 chain A Region: 38 - 113 Aligned: 76 Modelled: 76 Confidence: 99.4% Identity: 22% Fold: Alpha-lytic protease prodomain-like Superfamily: Prokaryotic type KH domain (KH-domain type II) Family: Prokaryotic type KH domain (KH-domain type II) Phyre2 PDB 3gku chain B Region: 38 - 103 Aligned: 66 Modelled: 66 Confidence: 94.2% Identity: 18% PDB header:rna binding protein Chain: B: PDB Molecule:probable rna-binding protein; PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940 Phyre2 PDB 2pt7 chain G Region: 38 - 104 Aligned: 67 Modelled: 67 Confidence: 92.7% Identity: 15% PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) Phyre2 PDB 1hh2 chain P domain 3 Region: 39 - 91 Aligned: 53 Modelled: 53 Confidence: 58.2% Identity: 26% Fold: Alpha-lytic protease prodomain-like Superfamily: Prokaryotic type KH domain (KH-domain type II) Family: Prokaryotic type KH domain (KH-domain type II) Phyre2 PDB 2asb chain A domain 3 Region: 39 - 91 Aligned: 53 Modelled: 53 Confidence: 53.9% Identity: 21% Fold: Alpha-lytic protease prodomain-like Superfamily: Prokaryotic type KH domain (KH-domain type II) Family: Prokaryotic type KH domain (KH-domain type II) Phyre2 PDB 1tua chain A domain 1 Region: 63 - 134 Aligned: 72 Modelled: 72 Confidence: 32.8% Identity: 18% Fold: Eukaryotic type KH-domain (KH-domain type I) Superfamily: Eukaryotic type KH-domain (KH-domain type I) Family: Eukaryotic type KH-domain (KH-domain type I) Phyre2 PDB 2hh3 chain A Region: 63 - 90 Aligned: 28 Modelled: 28 Confidence: 27.3% Identity: 32% PDB header:rna binding protein Chain: A: PDB Molecule:kh-type splicing regulatory protein; PDBTitle: solution structure of the third kh domain of ksrp Phyre2 1 c2qbfC_ 2 c1pnxC_ 3 c2gy9C_ 4 c1hnwC_ 5 c3bbnC_ 6 c2xznC_ 7 c2zkqc_ 8 c1s1hC_ 9 c3izbB_ 10 d2uubc2 11 d2qalc2 12 d2qalc1 13 d2uubc1 14 d1wh9a_ 15 c3gkuB_ 16 c2pt7G_ 17 d1hh2p3 18 d2asba3 19 d1tuaa1 20 c2hh3A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qbfC_ 100.0 100 PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal protein s3; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with ribosome recycling factor (rrf). this3 file contains the 30s subunit of the second 70s ribosome.4 the entire crystal structure contains two 70s ribosomes and5 is described in remark 400. 2 c1pnxC_ 100.0 52 PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal protein s3; PDBTitle: crystal structure of the wild type ribosome from e. coli,2 30s subunit of 70s ribosome. this file, 1pnx, contains3 only molecules of the 30s ribosomal subunit. the 50s4 subunit is in the pdb file 1pny. 3 c2gy9C_ 100.0 100 PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal subunit protein s3; PDBTitle: structure of the 30s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 4 c1hnwC_ 100.0 52 PDB header:ribosome Chain: C: PDB Molecule:30s ribosomal protein s3; PDBTitle: structure of the thermus thermophilus 30s ribosomal subunit2 in complex with tetracycline 5 c3bbnC_ 100.0 42 PDB header:ribosome Chain: C: PDB Molecule:ribosomal protein s3; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 6 c2xznC_ 100.0 21 PDB header:ribosome Chain: C: PDB Molecule:kh domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 7 c2zkqc_ 100.0 25 PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 8 c1s1hC_ 100.0 25 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 9 c3izbB_ 100.0 26 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein rps3 (s3p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 10 d2uubc2 100.0 62 Fold:Ribosomal protein S3 C-terminal domain Superfamily:Ribosomal protein S3 C-terminal domain Family:Ribosomal protein S3 C-terminal domain 11 d2qalc2 100.0 100 Fold:Ribosomal protein S3 C-terminal domain Superfamily:Ribosomal protein S3 C-terminal domain Family:Ribosomal protein S3 C-terminal domain 12 d2qalc1 100.0 100 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 13 d2uubc1 100.0 43 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 14 d1wh9a_ 99.4 22 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 15 c3gkuB_ 94.2 18 PDB header:rna binding protein Chain: B: PDB Molecule:probable rna-binding protein; PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940 16 c2pt7G_ 92.7 15 PDB header:hydrolase/protein binding Chain: G: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of cag virb11 (hp0525) and an inhibitory protein2 (hp1451) 17 d1hh2p3 58.2 26 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 18 d2asba3 53.9 21 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 19 d1tuaa1 32.8 18 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 20 c2hh3A_ 27.3 32 PDB header:rna binding protein Chain: A: PDB Molecule:kh-type splicing regulatory protein; PDBTitle: solution structure of the third kh domain of ksrp 21 c2hh2A_ not modelled 26.2 33 PDB header:rna binding protein Chain: A: PDB Molecule:kh-type splicing regulatory protein; PDBTitle: solution structure of the fourth kh domain of ksrp 22 c2cy1A_ not modelled 26.1 22 PDB header:transcription Chain: A: PDB Molecule:nusa protein homolog; PDBTitle: crystal structure of ape1850 23 d2axya1 not modelled 26.1 43 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 24 c2asbA_ not modelled 22.7 21 PDB header:transcription/rna Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex 25 d1dt4a_ not modelled 22.6 15 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 26 d1j4wa1 not modelled 21.4 39 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 27 c2anrA_ not modelled 19.7 33 PDB header:rna-binding protein/rna Chain: A: PDB Molecule:neuro-oncological ventral antigen 1; PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin 28 d1j4wa2 not modelled 19.3 26 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 29 d1dtja_ not modelled 18.4 15 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 30 d1khma_ not modelled 17.8 30 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 31 d1ec6a_ not modelled 17.6 15 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 32 d1wf3a2 not modelled 17.4 17 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 33 d1we8a_ not modelled 16.2 19 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 34 c1j4wA_ not modelled 15.5 41 PDB header:transcription/dna Chain: A: PDB Molecule:fuse binding protein; PDBTitle: complex of the kh3 and kh4 domains of fbp with a2 single_stranded 29mer dna oligonucleotide from the fuse3 element of the c-myc oncogene 35 c1ztgD_ not modelled 15.3 44 PDB header:dna, rna binding protein/dna Chain: D: PDB Molecule:poly(rc)-binding protein 1; PDBTitle: human alpha polyc binding protein kh1 36 d1wvna1 not modelled 15.2 26 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 37 d1viga_ not modelled 15.0 16 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 38 d1zzka1 not modelled 14.0 33 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 39 d1x4na1 not modelled 13.9 19 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 40 c1tuaA_ not modelled 13.7 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ape0754; PDBTitle: 1.5 a crystal structure of a protein of unknown function2 ape0754 from aeropyrum pernix 41 c2jvfA_ not modelled 13.7 19 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 42 d2ctla1 not modelled 13.2 25 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 43 d2ba0a3 not modelled 12.7 39 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 44 d1x4ma1 not modelled 12.3 33 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 45 c2dgrA_ not modelled 12.1 26 PDB header:rna binding protein Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1; PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1 46 c1k0rB_ not modelled 11.8 21 PDB header:transcription Chain: B: PDB Molecule:nusa; PDBTitle: crystal structure of mycobacterium tuberculosis nusa 47 d2ctja1 not modelled 11.6 22 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 48 c3af5A_ not modelled 11.2 19 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii 49 c3krmB_ not modelled 11.1 33 PDB header:rna binding protein Chain: B: PDB Molecule:insulin-like growth factor 2 mrna-binding protein PDBTitle: imp1 kh34 50 c1hh2P_ not modelled 11.1 26 PDB header:transcription regulation Chain: P: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima 51 d2ctea1 not modelled 10.6 33 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 52 d2cmea1 not modelled 10.6 50 Fold:SARS ORF9b-like Superfamily:'SARS ORF9b-like Family:SARS ORF9b-like 53 c2fenA_ not modelled 10.6 43 PDB header:isomerase Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme; PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2 54 c2qndA_ not modelled 10.3 24 PDB header:rna binding protein Chain: A: PDB Molecule:fmr1 protein; PDBTitle: crystal structure of the kh1-kh2 domains from human fragile x mental2 retardation protein 55 d2ctka1 not modelled 10.1 27 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 56 c2jzxA_ not modelled 9.8 46 PDB header:rna binding protein Chain: A: PDB Molecule:poly(rc)-binding protein 2; PDBTitle: pcbp2 kh1-kh2 domains 57 c2jvzA_ not modelled 9.3 36 PDB header:splicing Chain: A: PDB Molecule:far upstream element-binding protein 2; PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp 58 c1l2fA_ not modelled 9.3 26 PDB header:transcription Chain: A: PDB Molecule:n utilization substance protein a; PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain 59 c2w2rA_ not modelled 9.1 15 PDB header:viral protein Chain: A: PDB Molecule:matrix protein; PDBTitle: structure of the vesicular stomatitis virus matrix protein 60 d1hsta_ not modelled 8.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 61 d2ctma1 not modelled 8.6 19 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 62 d1egaa2 not modelled 8.2 25 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 63 d1myna_ not modelled 8.1 42 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Insect defensins 64 c1egaB_ not modelled 7.6 18 PDB header:hydrolase Chain: B: PDB Molecule:protein (gtp-binding protein era); PDBTitle: crystal structure of a widely conserved gtpase era 65 d2gysa1 not modelled 7.5 40 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 66 d1c3ca_ not modelled 7.4 43 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 67 c1qysA_ not modelled 7.3 13 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 68 c2pfmA_ not modelled 7.2 43 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis 69 d2ctfa1 not modelled 6.9 26 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 70 c3gtdB_ not modelled 6.7 57 PDB header:lyase Chain: B: PDB Molecule:fumarate hydratase class ii; PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii 71 d1tj7a_ not modelled 6.7 50 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 72 d1lg7a_ not modelled 6.6 12 Fold:VSV matrix protein Superfamily:VSV matrix protein Family:VSV matrix protein 73 d1tjva_ not modelled 6.1 50 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 74 d2fmra_ not modelled 6.0 38 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 75 c3ocfB_ not modelled 6.0 57 PDB header:lyase Chain: B: PDB Molecule:fumarate lyase:delta crystallin; PDBTitle: crystal structure of fumarate lyase:delta crystallin from brucella2 melitensis in native form 76 c3ej9D_ not modelled 5.9 44 PDB header:hydrolase Chain: D: PDB Molecule:beta-subunit of trans-3-chloroacrylic acid dehalogenase; PDBTitle: structural and mechanistic analysis of trans-3-chloroacrylic acid2 dehalogenase activity 77 d1f1oa_ not modelled 5.4 43 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 78 d1eu3a2 not modelled 5.3 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Superantigen toxins, C-terminal domain Family:Superantigen toxins, C-terminal domain 79 c3no9C_ not modelled 5.3 43 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase class ii; PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis 80 d1dofa_ not modelled 5.2 14 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 81 c3e04C_ not modelled 5.1 57 PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase; PDBTitle: crystal structure of human fumarate hydratase 82 d1yfma_ not modelled 5.0 57 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0