PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1j4wA_

Fold library id	PDB Header	Molecule	Title
c1j4wA_	PDB header: transcription/dna	Chain: A: PDB Molecule: fuse binding protein;	PDBTitle: complex of the kh3 and kh4 domains of fbp with a2 single_stranded 29mer dna oligonucleotide from the fuse3 element of the c-myc oncogene

Links to external resources
Added to library: Tue Mar 16 13:26:19 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S H M I D V P I P R F A V G I V I G R N G E M I K K I Q N D A G V R I Q F K P D D G T T P E R I A Q I T G P P D R A Q H A A E I I T D L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R S V Q Q E F N F I V P T G K T G L I I G K G G E T I K S I S Q Q S G A R I E L Q R N P P P N A D P N M K L F T I R G T P Q Q I D Y A R Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
G G G
T T T S
T T

. . . . .

Sequence I E E K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	H	M	I	D	V	P	I	P	R	F	A	V	G	I	V	I	G	R	N	G	E	M	I	K	K	I	Q	N	D	A	G	V	R	I	Q	F	K	P	D	D	G	T	T	P	E	R	I	A	Q	I	T	G	P	P	D	R	A	Q	H	A	A	E	I	I	T	D	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				G	G	G																				T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	S	V	Q	Q	E	F	N	F	I	V	P	T	G	K	T	G	L	I	I	G	K	G	G	E	T	I	K	S	I	S	Q	Q	S	G	A	R	I	E	L	Q	R	N	P	P	P	N	A	D	P	N	M	K	L	F	T	I	R	G	T	P	Q	Q	I	D	Y	A	R	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T							G	G	G																					T	T	T	S		T	T
	.	.	.	.	.
Sequence	I	E	E	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)