PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c1l2fA_

Fold library id	PDB Header	Molecule	Title
c1l2fA_	PDB header: transcription	Chain: A: PDB Molecule: n utilization substance protein a;	PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain

Links to external resources
Added to library: Tue Mar 16 13:14:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X N I G L L E A L D Q L E E E K G I S K E E V I P I L E K A L V S A Y R K N F G N S K N V E V V I D R N T G N I K V Y Q L L E V V E E V E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
S
S S S
T T T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P A T Q I S L E E A K K I D P L A E V G S I V K K E L N V K N F G R I A A Q T A K Q V L I Q R I R E L E K E K Q F E K Y S E L K G T V T T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T S S S
S S B
S
T T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E V I R V X G E W A D I R I G K L E T R L P K K E W I P G E E I K A G D L V K V Y I I D V V K T T K G P K I L V S R R V P E F V I G L X K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T G G G S
T T
T T
T T S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E I P E V E N G I V E I K A I A R E P G V R T K V A V A S N D P N V D P I G A C I G E G G S R I A A I L K E L K G E K L D V L K W S D D P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S T T T S S T T S
G G G T T T
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . .

Sequence Q L I A N A L A P A T V I E V E I L D K E N K A A R V L V P P T Q L S L A I G K G G Q N A R L A A K L T G W K I D I K P I X N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T S
S
T T T T
G G G
G G G
S S

Download: PDB structure FASTA sequence
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	N	I	G	L	L	E	A	L	D	Q	L	E	E	E	K	G	I	S	K	E	E	V	I	P	I	L	E	K	A	L	V	S	A	Y	R	K	N	F	G	N	S	K	N	V	E	V	V	I	D	R	N	T	G	N	I	K	V	Y	Q	L	L	E	V	V	E	E	V	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S													T																							S		S	S	S								T	T	T													S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	A	T	Q	I	S	L	E	E	A	K	K	I	D	P	L	A	E	V	G	S	I	V	K	K	E	L	N	V	K	N	F	G	R	I	A	A	Q	T	A	K	Q	V	L	I	Q	R	I	R	E	L	E	K	E	K	Q	F	E	K	Y	S	E	L	K	G	T	V	T	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T									T	T	S	S	S			S	S	B										S																															T	T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	V	I	R	V	X	G	E	W	A	D	I	R	I	G	K	L	E	T	R	L	P	K	K	E	W	I	P	G	E	E	I	K	A	G	D	L	V	K	V	Y	I	I	D	V	V	K	T	T	K	G	P	K	I	L	V	S	R	R	V	P	E	F	V	I	G	L	X	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S							T	T							G	G	G	S		T	T					T	T														T	T								S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	I	P	E	V	E	N	G	I	V	E	I	K	A	I	A	R	E	P	G	V	R	T	K	V	A	V	A	S	N	D	P	N	V	D	P	I	G	A	C	I	G	E	G	G	S	R	I	A	A	I	L	K	E	L	K	G	E	K	L	D	V	L	K	W	S	D	D	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S										T	T	T									S	S	T	T	S									G	G	G										T	T	T										S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Sequence	Q	L	I	A	N	A	L	A	P	A	T	V	I	E	V	E	I	L	D	K	E	N	K	A	A	R	V	L	V	P	P	T	Q	L	S	L	A	I	G	K	G	G	Q	N	A	R	L	A	A	K	L	T	G	W	K	I	D	I	K	P	I	X	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	T	T	S								S		T	T	T	T								G	G	G							G	G	G																			S	S