PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3gkuB_

Fold library id	PDB Header	Molecule	Title
c3gkuB_	PDB header: rna binding protein	Chain: B: PDB Molecule: probable rna-binding protein;	PDBTitle: crystal structure of a probable rna-binding protein from2 clostridium symbiosum atcc 14940

Links to external resources
Added to library: Sat Aug 28 21:03:10 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D X V T V T A K T V E E A V T K A L I E L Q T T S D K L T Y E I V K P A I I R A K R K E T L Q D K A I E F L E Q V F D A X N X A V D I S V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T
G G G
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y N E T E K E X N V N L K G D D X G I L I G K R G Q T L D S L Q Y L V S L V V N K S S S D Y I R V K L D T E N Y R E R R K E T L E T L A K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S G G G G G G T T T T
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . .

Sequence I A Y K V K R T K R S V S L E P X N P Y E R R I I H A A L Q N D K Y V V T R S D G E E P F R H V I I S L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T S S
T T S
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	X	V	T	V	T	A	K	T	V	E	E	A	V	T	K	A	L	I	E	L	Q	T	T	S	D	K	L	T	Y	E	I	V	K	P	A	I	I	R	A	K	R	K	E	T	L	Q	D	K	A	I	E	F	L	E	Q	V	F	D	A	X	N	X	A	V	D	I	S	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	S											T	T			G	G	G																																		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	N	E	T	E	K	E	X	N	V	N	L	K	G	D	D	X	G	I	L	I	G	K	R	G	Q	T	L	D	S	L	Q	Y	L	V	S	L	V	V	N	K	S	S	S	D	Y	I	R	V	K	L	D	T	E	N	Y	R	E	R	R	K	E	T	L	E	T	L	A	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T								S	G	G	G	G	G	G	T	T	T																			T		S	S									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Sequence	I	A	Y	K	V	K	R	T	K	R	S	V	S	L	E	P	X	N	P	Y	E	R	R	I	I	H	A	A	L	Q	N	D	K	Y	V	V	T	R	S	D	G	E	E	P	F	R	H	V	I	I	S	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S																			T	S	S		T	T							S		T	T	S