Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	K	S	T	P	C	I	T	I	D	F	M	N	M	S	Q	L	T	E	R	T	F	T	P	S	E	S	L	S	S	L	S	L	F	L	S	L	A	R	G	Q	C	R	P	G	K	F	W	H	R	R	S	F	R	Q	K	F	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?								?	?	?		?	?	?	?	?	?	?	?	?	?	?	?											?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	S	L	I	M	P	R	L	S	V	E	W	M	N	E	L	S	H	W	P	N	L	N	V	L	L	T	R	Q	P	R	L	P	V	R	L	H	R	P	Y	L	A	A	N	L	S	R	K	Q	L	L	E	A	L	R	Y	H	Y	A	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	R	E	C	M	S	A	E	E	F	S	L	Y	L	N	T	P	G	L	Q	L	A	K	L	E	G	K	N	G	E	Q	F	T	L	E	L	T	M	M	I	S	M	D	K	E	G	D	S	T	I	L	F	R	N	S	E	G	I	P	L
Secondary structure
SS confidence
Disorder																																								?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	E	I	T	F	T	L	C	E	Y	Q	G	K	R	T	M	F	I	G	G	L	Q	G	A	K	W	E	I	P	H	Q	E	I	Q	N	A	T	K	A	C	H	G	L	F	P	K	R	L	V	M	E	A	A	C	L	F	A	Q	R	L
Secondary structure
SS confidence
Disorder																											?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	V	E	Q	I	I	A	V	S	N	E	T	H	I	Y	R	S	L	R	Y	R	D	K	E	G	K	I	H	A	D	Y	N	A	F	W	E	S	V	G	G	V	C	D	A	E	R	H	Y	R	L	P	A	Q	I	A	R	K	E	I	A
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?																			?												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Sequence		E	I	A	S	K	K	R	A	E	Y	R	R	R	Y	E	M	L	D	A	I	Q	P	Q	M	A	T	M	F	R	G
Secondary structure
SS confidence
Disorder			?	?	?	?	?																						?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2cx6 chain A domain 1 Region: 270 - 329 Aligned: 52 Modelled: 60 Confidence: 32.0% Identity: 19% Fold: Barstar-like Superfamily: Barstar-related Family: Barstar-related Phyre2 PDB 3sak chain A Region: 311 - 327 Aligned: 17 Modelled: 17 Confidence: 26.9% Identity: 24% Fold: p53 tetramerization domain Superfamily: p53 tetramerization domain Family: p53 tetramerization domain Phyre2 PDB 3bvh chain E Region: 167 - 207 Aligned: 41 Modelled: 41 Confidence: 25.2% Identity: 15% PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide Phyre2 PDB 2o3a chain A domain 1 Region: 222 - 293 Aligned: 72 Modelled: 72 Confidence: 24.3% Identity: 17% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: AF0751-like Phyre2 PDB 3pei chain A Region: 227 - 305 Aligned: 75 Modelled: 79 Confidence: 22.8% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis Phyre2 PDB 3nw0 chain B Region: 211 - 255 Aligned: 43 Modelled: 45 Confidence: 22.0% Identity: 14% PDB header:metal binding protein Chain: B: PDB Molecule:melanoma-associated antigen g1; PDBTitle: crystal structure of mageg1 and nse1 complex Phyre2 PDB 3zy1 chain A Region: 311 - 324 Aligned: 14 Modelled: 14 Confidence: 20.4% Identity: 43% PDB header:transcription Chain: A: PDB Molecule:tumor protein 63; PDBTitle: crystal structure of the human p63 tetramerization domain Phyre2 PDB 4a9z chain D Region: 311 - 324 Aligned: 14 Modelled: 14 Confidence: 20.0% Identity: 43% PDB header:transcription Chain: D: PDB Molecule:tumor protein 63; PDBTitle: crystal structure of human p63 tetramerization domain Phyre2 PDB 1gyt chain A domain 2 Region: 227 - 305 Aligned: 75 Modelled: 79 Confidence: 19.9% Identity: 20% Fold: Phosphorylase/hydrolase-like Superfamily: Zn-dependent exopeptidases Family: Leucine aminopeptidase, C-terminal domain Phyre2 PDB 1zc6 chain A domain 2 Region: 184 - 235 Aligned: 52 Modelled: 52 Confidence: 19.8% Identity: 17% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: BadF/BadG/BcrA/BcrD-like Phyre2 PDB 2hpc chain H Region: 167 - 207 Aligned: 41 Modelled: 41 Confidence: 19.5% Identity: 15% PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. Phyre2 PDB 3qu3 chain A Region: 36 - 65 Aligned: 30 Modelled: 30 Confidence: 18.8% Identity: 33% PDB header:dna binding protein Chain: A: PDB Molecule:interferon regulatory factor 7; PDBTitle: crystal structure of irf-7 dbd apo form Phyre2 PDB 1lwu chain H Region: 167 - 207 Aligned: 41 Modelled: 41 Confidence: 18.0% Identity: 10% PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from lamprey fibrinogen complexed with2 the peptide gly-his-arg-pro-amide Phyre2 PDB 3d35 chain A Region: 270 - 312 Aligned: 43 Modelled: 43 Confidence: 17.1% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: crystal structure of rtt109-ac-coa complex Phyre2 PDB 3h8g chain C Region: 227 - 305 Aligned: 75 Modelled: 79 Confidence: 17.0% Identity: 16% PDB header:hydrolase Chain: C: PDB Molecule:cytosol aminopeptidase; PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida Phyre2 PDB 2fh1 chain A domain 2 Region: 272 - 280 Aligned: 9 Modelled: 9 Confidence: 16.3% Identity: 56% Fold: Gelsolin-like Superfamily: Actin depolymerizing proteins Family: Gelsolin-like Phyre2 PDB 2c4r chain L Region: 8 - 17 Aligned: 10 Modelled: 10 Confidence: 15.9% Identity: 50% PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e Phyre2 PDB 3ray chain A Region: 241 - 279 Aligned: 39 Modelled: 39 Confidence: 15.5% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:pr domain-containing protein 11; PDBTitle: crystal structure of methyltransferase domain of human pr domain-2 containing protein 11 Phyre2 PDB 3jru chain B Region: 227 - 305 Aligned: 75 Modelled: 79 Confidence: 15.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:probable cytosol aminopeptidase; PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331 Phyre2 PDB 3kr5 chain E Region: 227 - 305 Aligned: 75 Modelled: 79 Confidence: 14.5% Identity: 20% PDB header:hydrolase Chain: E: PDB Molecule:m17 leucyl aminopeptidase; PDBTitle: structure of a protease 4 Phyre2 1 d2cx6a1 2 d3saka_ 3 c3bvhE_ 4 d2o3aa1 5 c3peiA_ 6 c3nw0B_ 7 c3zy1A_ 8 c4a9zD_ 9 d1gyta2 10 d1zc6a2 11 c2hpcH_ 12 c3qu3A_ 13 c1lwuH_ 14 c3d35A_ 15 c3h8gC_ 16 d2fh1a2 17 c2c4rL_ 18 c3rayA_ 19 c3jruB_ 20 c3kr5E_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2cx6a1 32.0 19 Fold:Barstar-like Superfamily:Barstar-related Family:Barstar-related 2 d3saka_ 26.9 24 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 3 c3bvhE_ 25.2 15 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 4 d2o3aa1 24.3 17 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 5 c3peiA_ 22.8 20 PDB header:hydrolase Chain: A: PDB Molecule:cytosol aminopeptidase; PDBTitle: crystal structure of cytosol aminopeptidase from francisella2 tularensis 6 c3nw0B_ 22.0 14 PDB header:metal binding protein Chain: B: PDB Molecule:melanoma-associated antigen g1; PDBTitle: crystal structure of mageg1 and nse1 complex 7 c3zy1A_ 20.4 43 PDB header:transcription Chain: A: PDB Molecule:tumor protein 63; PDBTitle: crystal structure of the human p63 tetramerization domain 8 c4a9zD_ 20.0 43 PDB header:transcription Chain: D: PDB Molecule:tumor protein 63; PDBTitle: crystal structure of human p63 tetramerization domain 9 d1gyta2 19.9 20 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 10 d1zc6a2 19.8 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 11 c2hpcH_ 19.5 15 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 12 c3qu3A_ 18.8 33 PDB header:dna binding protein Chain: A: PDB Molecule:interferon regulatory factor 7; PDBTitle: crystal structure of irf-7 dbd apo form 13 c1lwuH_ 18.0 10 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from lamprey fibrinogen complexed with2 the peptide gly-his-arg-pro-amide 14 c3d35A_ 17.1 16 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: crystal structure of rtt109-ac-coa complex 15 c3h8gC_ 17.0 16 PDB header:hydrolase Chain: C: PDB Molecule:cytosol aminopeptidase; PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida 16 d2fh1a2 16.3 56 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 17 c2c4rL_ 15.9 50 PDB header:hydrolase Chain: L: PDB Molecule:ribonuclease e; PDBTitle: catalytic domain of e. coli rnase e 18 c3rayA_ 15.5 13 PDB header:transcription Chain: A: PDB Molecule:pr domain-containing protein 11; PDBTitle: crystal structure of methyltransferase domain of human pr domain-2 containing protein 11 19 c3jruB_ 15.0 19 PDB header:hydrolase Chain: B: PDB Molecule:probable cytosol aminopeptidase; PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331 20 c3kr5E_ 14.5 20 PDB header:hydrolase Chain: E: PDB Molecule:m17 leucyl aminopeptidase; PDBTitle: structure of a protease 4 21 d1v8ca2 not modelled 14.1 35 Fold:TBP-like Superfamily:MoaD-related protein, C-terminal domain Family:MoaD-related protein, C-terminal domain 22 c2gutA_ not modelled 13.4 29 PDB header:transcription Chain: A: PDB Molecule:arc/mediator, positive cofactor 2 glutamine/q- PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105 23 d1lama1 not modelled 13.3 16 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Leucine aminopeptidase, C-terminal domain 24 c2vcpE_ not modelled 13.1 27 PDB header:structural protein Chain: E: PDB Molecule:neural wiskott-aldrich syndrome protein; PDBTitle: crystal structure of n-wasp vc domain in complex with2 skeletal actin 25 d1d0na5 not modelled 13.0 45 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 26 d1e7ua2 not modelled 12.9 8 Fold:C2 domain-like Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB) Family:PLC-like (P variant) 27 c3ghgK_ not modelled 12.6 15 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 28 c1gytG_ not modelled 12.4 20 PDB header:hydrolase Chain: G: PDB Molecule:cytosol aminopeptidase; PDBTitle: e. coli aminopeptidase a (pepa) 29 d1npha2 not modelled 12.2 56 Fold:Gelsolin-like Superfamily:Actin depolymerizing proteins Family:Gelsolin-like 30 d2a90a2 not modelled 11.1 43 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 31 c3k13A_ not modelled 11.1 24 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 32 d1lwub1 not modelled 11.0 10 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 33 c3nztA_ not modelled 10.9 27 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: 2.0 angstrom crystal structure of glutamate--cysteine ligase (gsha)2 ftom francisella tularensis in complex with amp 34 d2tsra_ not modelled 10.8 20 Fold:Thymidylate synthase/dCMP hydroxymethylase Superfamily:Thymidylate synthase/dCMP hydroxymethylase Family:Thymidylate synthase/dCMP hydroxymethylase 35 c1ei3E_ not modelled 10.8 15 PDB header: PDB COMPND: 36 c2dymE_ not modelled 10.6 17 PDB header:protein turnover/protein turnover Chain: E: PDB Molecule:autophagy protein 5; PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex 37 c3fpjA_ not modelled 10.5 19 PDB header:biosynthetic protein, transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of e81q mutant of mtnas in complex with s-2 adenosylmethionine 38 d2czla1 not modelled 10.5 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 39 c3cz7A_ not modelled 10.3 16 PDB header:replication Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: molecular basis for the autoregulation of the protein acetyl2 transferase rtt109 40 c2zfnA_ not modelled 9.9 16 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: self-acetylation mediated histone h3 lysine 56 acetylation by rtt109 41 c3mwbA_ not modelled 9.7 14 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 42 d1kzfa_ not modelled 9.6 17 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:Autoinducer synthetase 43 c3luyA_ not modelled 9.4 20 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 44 d1wh6a_ not modelled 9.4 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 45 d2it9a1 not modelled 9.3 21 Fold:ssDNA-binding transcriptional regulator domain Superfamily:ssDNA-binding transcriptional regulator domain Family:PMN2A0962/syc2379c-like 46 c3ix6B_ not modelled 9.1 26 PDB header:transferase Chain: B: PDB Molecule:thymidylate synthase; PDBTitle: crystal structure of thymidylate synthase thya from brucella2 melitensis 47 c2hc9A_ not modelled 8.7 6 PDB header:hydrolase Chain: A: PDB Molecule:leucine aminopeptidase 1; PDBTitle: structure of caenorhabditis elegans leucine aminopeptidase-zinc2 complex (lap1) 48 c2a3zC_ not modelled 8.6 31 PDB header:structural protein Chain: C: PDB Molecule:wiskott-aldrich syndrome protein; PDBTitle: ternary complex of the wh2 domain of wasp with actin-dnase i 49 c2kerA_ not modelled 8.6 38 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:alpha-amylase inhibitor z-2685; PDBTitle: alpha-amylase inhibitor parvulustat (z-2685) from2 streptomyces parvulus 50 d1tf5a1 not modelled 8.4 17 Fold:Pre-protein crosslinking domain of SecA Superfamily:Pre-protein crosslinking domain of SecA Family:Pre-protein crosslinking domain of SecA 51 d2o0ma1 not modelled 8.3 9 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 52 c2o0mA_ not modelled 8.3 9 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis 53 d1nkta1 not modelled 8.2 18 Fold:Pre-protein crosslinking domain of SecA Superfamily:Pre-protein crosslinking domain of SecA Family:Pre-protein crosslinking domain of SecA 54 d1ok0a_ not modelled 8.2 50 Fold:alpha-Amylase inhibitor tendamistat Superfamily:alpha-Amylase inhibitor tendamistat Family:alpha-Amylase inhibitor tendamistat 55 d1fzda_ not modelled 8.0 10 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 56 d1uw4a_ not modelled 8.0 4 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Smg-4/UPF3 57 d1v66a_ not modelled 7.7 36 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 58 d1m1jb1 not modelled 7.5 15 Fold:Fibrinogen C-terminal domain-like Superfamily:Fibrinogen C-terminal domain-like Family:Fibrinogen C-terminal domain-like 59 c2e1nA_ not modelled 7.5 23 PDB header:circadian clock protein Chain: A: PDB Molecule:pex; PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex 60 d2a90a1 not modelled 7.5 7 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 61 d2oz4a2 not modelled 7.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 62 d1yvoa1 not modelled 7.1 11 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 63 d1o6la_ not modelled 7.0 15 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Protein kinases, catalytic subunit 64 d1oe4a_ not modelled 6.8 30 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1 65 c3dwdB_ not modelled 6.8 20 PDB header:transport protein Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1; PDBTitle: crystal structure of the arfgap domain of human arfgap1 66 d1t62a_ not modelled 6.7 29 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical protein EF3133 67 d2qqsa2 not modelled 6.7 24 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:Tudor domain 68 c3jqxA_ not modelled 6.7 9 PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cadmium 69 c3a9lB_ not modelled 6.6 14 PDB header:hydrolase Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase; PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase 70 c3km3B_ not modelled 6.6 19 PDB header:hydrolase Chain: B: PDB Molecule:deoxycytidine triphosphate deaminase; PDBTitle: crystal structure of eoxycytidine triphosphate deaminase from2 anaplasma phagocytophilum at 2.1a resolution 71 d1n6za_ not modelled 6.5 40 Fold:Hypothetical protein Yml108w Superfamily:Hypothetical protein Yml108w Family:Hypothetical protein Yml108w 72 d1ufwa_ not modelled 6.5 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 73 c1vbiA_ not modelled 6.4 30 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 74 d1tqza1 not modelled 6.4 29 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Necap1 N-terminal domain-like 75 c1jjoE_ not modelled 6.3 9 PDB header:signaling protein Chain: E: PDB Molecule:neuroserpin; PDBTitle: crystal structure of mouse neuroserpin (cleaved form) 76 c2yy8B_ not modelled 6.1 17 PDB header:transferase Chain: B: PDB Molecule:upf0106 protein ph0461; PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine 77 c3m3nW_ not modelled 6.1 31 PDB header:structural protein Chain: W: PDB Molecule:neural wiskott-aldrich syndrome protein; PDBTitle: structure of a longitudinal actin dimer assembled by tandem w domains 78 c3f02C_ not modelled 6.0 14 PDB header:hydrolase inhibitor Chain: C: PDB Molecule:neuroserpin; PDBTitle: cleaved human neuroserpin 79 d1v8ha1 not modelled 6.0 22 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SoxZ-like 80 d1x4fa1 not modelled 6.0 8 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 81 d1ua4a_ not modelled 5.9 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 82 c3lyrA_ not modelled 5.9 25 PDB header:transcription activator Chain: A: PDB Molecule:transcription factor coe1; PDBTitle: human early b-cell factor 1 (ebf1) dna-binding domain 83 c3kgbA_ not modelled 5.9 15 PDB header:transferase Chain: A: PDB Molecule:thymidylate synthase 1/2; PDBTitle: crystal structure of thymidylate synthase 1/2 from encephalitozoon2 cuniculi at 2.2 a resolution 84 c2jx2A_ not modelled 5.8 14 PDB header:transcription Chain: A: PDB Molecule:negative elongation factor e; PDBTitle: solution conformation of rna-bound nelf-e rrm 85 d1l2la_ not modelled 5.8 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 86 c1deqO_ not modelled 5.8 15 PDB header: PDB COMPND: 87 c3s9xA_ not modelled 5.7 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101 88 c2qsrA_ not modelled 5.7 15 PDB header:transcription Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor 89 d1umya_ not modelled 5.6 27 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 90 d2irfg_ not modelled 5.5 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Interferon regulatory factor 91 c1hleB_ not modelled 5.5 15 PDB header:hydrolase inhibitor(serine proteinase) Chain: B: PDB Molecule:horse leukocyte elastase inhibitor; PDBTitle: crystal structure of cleaved equine leucocyte elastase2 inhibitor determined at 1.95 angstroms resolution 92 c2bn5A_ not modelled 5.5 50 PDB header:nuclear protein Chain: A: PDB Molecule:psi; PDBTitle: p-element somatic inhibitor protein complex with u1-70k2 proline-rich peptide 93 d1duvg1 not modelled 5.5 22 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 94 d2o4aa1 not modelled 5.4 9 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 95 d1px5a1 not modelled 5.4 18 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:2'-5'-oligoadenylate synthetase 1, OAS1, second domain 96 d1tswa_ not modelled 5.4 23 Fold:Thymidylate synthase/dCMP hydroxymethylase Superfamily:Thymidylate synthase/dCMP hydroxymethylase Family:Thymidylate synthase/dCMP hydroxymethylase 97 d2b4jc1 not modelled 5.3 9 Fold:N-cbl like Superfamily:HIV integrase-binding domain Family:HIV integrase-binding domain 98 c1wtjB_ not modelled 5.3 15 PDB header:oxidoreductase Chain: B: PDB Molecule:ureidoglycolate dehydrogenase; PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato 99 c2h4qB_ not modelled 5.3 20 PDB header:hydrolase inhibitor Chain: B: PDB Molecule:heterochromatin-associated protein ment; PDBTitle: crystal structure of a m-loop deletion variant of ment in2 the cleaved conformation

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0