PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3lyrA_

Fold library id	PDB Header	Molecule	Title
c3lyrA_	PDB header: transcription activator	Chain: A: PDB Molecule: transcription factor coe1;	PDBTitle: human early b-cell factor 1 (ebf1) dna-binding domain

Links to external resources
Added to library: Sat Aug 28 19:23:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S G X N A V R T W X Q G A G V L D A N T A A Q S G V G L A R A H F E K Q P P S N L R K S N F F H F V L A L Y D R Q G Q P V E I E R T A F V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S
S T T T
S T T S T T S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G F V E K E K E A N S E K T N N G I H Y R L Q L L Y S N G I R T E Q D F Y V R L I D S X T K Q A I V Y E G Q D K N P E X C R V L L T H E I X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S G G G
T T S
T T T
B
S S T T S
S S
S G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence C S R C C D K K S C G N R N E T P S D P V I I D R F F L K F F L K C N Q N C L K D X R R F Q V V V S T T V N V D G H V L A V S D N X F V H N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T T S
S S
T T T
S
S S S
T T S S
B

.

Sequence N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	G	X	N	A	V	R	T	W	X	Q	G	A	G	V	L	D	A	N	T	A	A	Q	S	G	V	G	L	A	R	A	H	F	E	K	Q	P	P	S	N	L	R	K	S	N	F	F	H	F	V	L	A	L	Y	D	R	Q	G	Q	P	V	E	I	E	R	T	A	F	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S								T	T	S		S								T	T	T														S				T	T	S											T	T	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	F	V	E	K	E	K	E	A	N	S	E	K	T	N	N	G	I	H	Y	R	L	Q	L	L	Y	S	N	G	I	R	T	E	Q	D	F	Y	V	R	L	I	D	S	X	T	K	Q	A	I	V	Y	E	G	Q	D	K	N	P	E	X	C	R	V	L	L	T	H	E	I	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		G	G	G	S	G	G	G																T	T	S														T	T	T			B								S	S	T	T	S		S	S				S	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	C	S	R	C	C	D	K	K	S	C	G	N	R	N	E	T	P	S	D	P	V	I	I	D	R	F	F	L	K	F	F	L	K	C	N	Q	N	C	L	K	D	X	R	R	F	Q	V	V	V	S	T	T	V	N	V	D	G	H	V	L	A	V	S	D	N	X	F	V	H	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T				T	T	T	T	T	S		S	S					T	T	T												S													S	S	S		T	T	S	S								B
	.
Sequence	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)