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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2dymE_

Fold library idPDB HeaderMoleculeTitle
c2dymE_PDB header: protein turnover/protein turnoverChain: E: PDB Molecule: autophagy protein 5;PDBTitle: the crystal structure of saccharomyces cerevisiae atg5-2 atg16(1-46) complex


Added to library: Tue Mar 16 14:20:16 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AHMNDIKQLLWNGELNVLVSIDPSFLMEIAVLRIRVPRETYLVNYMPLIWNKEKYFWFEHNKTPIPWNYP
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Known secondary structure (DSSP)
T

GGG



SSSS
GGGGT


TT
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VGVLFDCLASFENQVKDVLTFLRIHLVMGDSLPPTIIPIASSKTQAEKFWFHQWKQVCFILNGSSKAIMS
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Known secondary structure (DSSP)

TTTS
TT



SS

TTS



SSTTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LSVNEARKFWGSVITRNFQDFIEISNKISSSRPRHIPLIIQTSRTRISQPTISMTGVNPTLKDIEGDILD
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Known secondary structure (DSSP)

T
TS
SS
SB









B
TT


BTGGG

 .........220.........230.........240.......
Sequence VMVICQGIEIPWHMLLYDLYSKLRSFDGFLYITLVPI
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Known secondary structure (DSSP) TT

TTSB

TTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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