Email l.a.kelley@imperial.ac.uk Description P0AA39 Date Thu Jan 5 11:11:50 GMT 2012 Unique Job ID 18dd6752d09bfd3a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1v9ka_ 100.0 98 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 2 d1v9fa_ 100.0 31 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 3 c1v9fA_ 100.0 31 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 4 c1qyuA_ 100.0 31 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 5 c2i82D_ 100.0 38 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 6 c1kskA_ 100.0 24 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 7 c1vioA_ 100.0 21 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 8 c3dh3C_ 100.0 19 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 9 c2omlA_ 100.0 17 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 10 c2olwB_ 100.0 17 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 11 d1kska4 100.0 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 12 d1vioa1 100.0 21 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 13 c2gmlA_ 100.0 18 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 14 c2k6pA_ 99.5 19 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 15 d1dm9a_ 99.0 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 16 c1dm9A_ 99.0 20 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 17 c3bbnD_ 98.9 19 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 18 d1vioa2 98.8 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 19 d1c06a_ 98.6 12 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 20 d1p9ka_ 98.5 14 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 21 d2uubd1 not modelled 98.4 19 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 22 d2gy9d1 not modelled 98.2 14 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 23 c2cqjA_ not modelled 97.9 18 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 24 d1k8wa5 not modelled 97.7 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 25 d2ey4a2 not modelled 97.6 27 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 26 d2apoa2 not modelled 97.6 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 27 d1sgva2 not modelled 97.5 27 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 28 c2ey4A_ not modelled 97.5 27 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 29 d1r3ea2 not modelled 97.5 24 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 30 c3uaiA_ not modelled 97.3 17 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 31 c3hp7A_ not modelled 97.3 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 32 c2apoA_ not modelled 97.3 23 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 33 c1k8wA_ not modelled 97.3 20 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 34 c1sgvA_ not modelled 97.3 27 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 35 d1kska3 not modelled 97.1 27 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 36 c1s1hD_ not modelled 96.9 11 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 37 c2xzmD_ not modelled 96.8 10 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 38 d1h3fa2 not modelled 96.6 11 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 39 d1jh3a_ not modelled 95.7 15 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 40 c1ze2B_ not modelled 95.7 28 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 41 c3kbgA_ not modelled 95.5 27 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 42 c1h3eA_ not modelled 95.1 13 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol 43 c2xzmW_ not modelled 94.9 25 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 44 c2janD_ not modelled 93.9 22 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 45 c3iz6D_ not modelled 93.9 28 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 46 c3izbD_ not modelled 93.6 25 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 47 d1fm0d_ not modelled 85.2 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 48 c2qieB_ not modelled 83.7 19 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 49 c3po0A_ not modelled 82.4 19 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 50 d1vjka_ not modelled 82.3 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 51 c3iz6C_ not modelled 81.1 10 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 52 d2g1la1 not modelled 78.5 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 53 d1wgka_ not modelled 77.7 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 54 c2g1eA_ not modelled 75.4 15 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 55 c3fm8A_ not modelled 71.0 20 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 56 d1xo3a_ not modelled 70.6 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 57 c2eh0A_ not modelled 69.0 28 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 58 c2kmmA_ not modelled 67.9 28 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 59 c3hvzB_ not modelled 66.4 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 60 c2qjlA_ not modelled 66.1 14 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 61 c1v8cA_ not modelled 66.1 21 PDB header:protein binding Chain: A: PDB Molecule:moad related protein; PDBTitle: crystal structure of moad related protein from thermus2 thermophilus hb8 62 d2affa1 not modelled 63.3 26 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 63 c1r21A_ not modelled 61.1 26 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 64 c3dwmA_ not modelled 59.7 28 PDB header:transferase Chain: A: PDB Molecule:9.5 kda culture filtrate antigen cfp10a; PDBTitle: crystal structure of mycobacterium tuberculosis cyso, an antigen 65 d1wlna1 not modelled 59.0 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 66 d1v8ca1 not modelled 59.0 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 67 c3rpfC_ not modelled 57.9 14 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 68 d1tkea1 not modelled 57.3 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 69 d1rwsa_ not modelled 54.7 29 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 70 c2hj1A_ not modelled 53.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae 71 d2hj1a1 not modelled 53.2 17 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:HI0395-like 72 d2ff4a3 not modelled 52.3 36 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 73 c2k9xA_ not modelled 50.2 26 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of urm1 from trypanosoma brucei 74 d1wxqa2 not modelled 46.5 32 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:G domain-linked domain 75 c1yj5C_ not modelled 42.2 27 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 76 c3elsA_ not modelled 38.1 24 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 77 c3gqsB_ not modelled 37.8 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 78 c2jqlA_ not modelled 37.7 24 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 79 d1nyra2 not modelled 37.5 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 80 c3kt9A_ not modelled 36.3 17 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 81 c3zrhA_ not modelled 35.8 19 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase zranb1; PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd) 82 c3hx1B_ not modelled 34.3 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 83 c2l52A_ not modelled 33.0 32 PDB header:protein binding Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog; PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans 84 c3poaA_ not modelled 31.1 29 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 85 d1lgpa_ not modelled 30.6 21 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 86 d1g6ga_ not modelled 28.3 23 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 87 d1zud21 not modelled 27.4 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 88 d2piea1 not modelled 26.4 24 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 89 c2kklA_ not modelled 25.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 90 c1gxcA_ not modelled 25.8 16 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 91 d1gxca_ not modelled 25.8 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 92 c3cwiA_ not modelled 23.1 23 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 93 c2jkdB_ not modelled 23.1 24 PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex 94 c2h89B_ not modelled 21.2 10 PDB header:oxidoreductase Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; PDBTitle: avian respiratory complex ii with malonate bound 95 c2zodB_ not modelled 20.1 21 PDB header:transferase Chain: B: PDB Molecule:selenide, water dikinase; PDBTitle: crystal structure of selenophosphate synthetase from2 aquifex aeolicus 96 c2ekiA_ not modelled 20.0 20 PDB header:signaling protein Chain: A: PDB Molecule:developmentally-regulated gtp-binding protein 1; PDBTitle: solution structures of the tgs domain of human2 developmentally-regulated gtp-binding protein 1 97 d1k25a2 not modelled 19.9 7 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain 98 d1g3ga_ not modelled 19.8 23 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 99 d1c1za5 not modelled 19.7 29 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain