Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77802
DateThu Jan 5 12:32:57 GMT 2012
Unique Job ID185dcf661c768f26

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 88%
736 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPLRRFSPGLKAQFAFGMVFLFVQPDASAADISAQQIGGVIIPQAFSQALQDGMSVPLYI
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   .........70.........80.........90.........100.........110.........120
Sequence  HLAGSQGRQDDQRIGSAFIWLDDGQLRIRKIQLEESEDNASVSEQTRQQLMALANAPFNE
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   .........130.........140.........150.........160.........170.........180
Sequence  ALTIPLTDNAQLDLSLRQLLLQLVVKREALGTVLRSRSEDIGQSSVNTLSSNLSYNLGVY
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   .........190.........200.........210.........220.........230.........240
Sequence  NNQLRNGGSNTSSYLSLNNVTALREHHVVLDGSLYGIGSGQQDSELYKAMYERDFAGHRF
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   .........250.........260.........270.........280.........290.........300
Sequence  AGGMLDTWNLQSLGPMTAISAGKIYGLSWGNQASSTIFDSSQSATPVIAFLPAAGEVHLT
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   .........310.........320.........330.........340.........350.........360
Sequence  RDGRLLSVQNFTMGNHEVDTRGLPYGIYDVEVEVIVNGRVISKRTQRVNKLFSRGRGVGA
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   .........370.........380.........390.........400.........410.........420
Sequence  PLAWQVWGGSFHMDRWSENGKKTRPAKESWLAGASTSGSLSTLSWAATGYGYDNQAVGET
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   .........430.........440.........450.........460.........470.........480
Sequence  RLTLPLGGAINVNLQNMLASDSSWSSIGSISATLPGGFSSLWVNQEKTRIGNQLRRSDAD
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   .........490.........500.........510.........520.........530.........540
Sequence  NRAIGGTLNLNSLWSKLGTFSISYNDDRRYNSHYYTADYYQNVYSGTFGSLGLRAGIQRY
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   .........550.........560.........570.........580.........590.........600
Sequence  NNGDSNANTGKYIALDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGTIRTVGANLSR
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   .........610.........620.........630.........640.........650.........660
Sequence  AISGDTGDDKTLSGGAYAQFDARYASGTLNVNSAADGYVNTNLTANGSVGWQGKNIAASG
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   .........670.........680.........690.........700.........710.........720
Sequence  RTDGNAGVIFNTGLEDDGQISAKINGRIFPLNGKRNYLPLSPYGRYEVELQNSKNSLDSY
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   .........730.........740.........750.........760.........770.........780
Sequence  DIVSGRKSRLTLYPGNVAVIEPEVKQMVTVSGRIRAEDGTLLANARINNHIGRTRTDENG
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Disorder  ??

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   .........790.........800.........810.........820.........830.........840
Sequence  EFVMDVDKKYPTIDFRYSGNKTCEVALELNQARGAVWVGDVVCSGLSSWAAVTQTGEENE
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   .
Sequence  S
Secondary structure 
SS confidence 
Disorder  ?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 68 - 824
Aligned: 736
Modelled: 757
Confidence: 100.0%
Identity: 12%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 3ohn chain A

3D model

Region: 170 - 649
Aligned: 453
Modelled: 478
Confidence: 100.0%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 2vqi chain A

3D model

Region: 172 - 653
Aligned: 458
Modelled: 476
Confidence: 100.0%
Identity: 15%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 67 - 171
Aligned: 103
Modelled: 105
Confidence: 99.9%
Identity: 18%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 277 - 355
Aligned: 71
Modelled: 79
Confidence: 99.8%
Identity: 18%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 41 - 150
Aligned: 105
Modelled: 110
Confidence: 99.7%
Identity: 16%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 67 - 157
Aligned: 89
Modelled: 91
Confidence: 99.7%
Identity: 19%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3l48 chain B

3D model

Region: 747 - 825
Aligned: 77
Modelled: 79
Confidence: 99.4%
Identity: 16%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 2xet chain B

3D model

Region: 749 - 826
Aligned: 78
Modelled: 78
Confidence: 99.3%
Identity: 10%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 1uwy chain A

3D model

Region: 750 - 836
Aligned: 87
Modelled: 87
Confidence: 95.5%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 1h8l chain A domain 1

3D model

Region: 750 - 822
Aligned: 73
Modelled: 73
Confidence: 95.3%
Identity: 15%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 750 - 812
Aligned: 63
Modelled: 63
Confidence: 94.8%
Identity: 21%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2

PDB 2nsm chain A

3D model

Region: 750 - 813
Aligned: 64
Modelled: 64
Confidence: 94.8%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain

Phyre2

PDB 1h8l chain A

3D model

Region: 749 - 813
Aligned: 65
Modelled: 65
Confidence: 94.6%
Identity: 15%
PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa

Phyre2

PDB 3mn8 chain A

3D model

Region: 750 - 799
Aligned: 50
Modelled: 50
Confidence: 94.1%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short

Phyre2

PDB 2bur chain B domain 1

3D model

Region: 748 - 791
Aligned: 44
Modelled: 44
Confidence: 91.8%
Identity: 43%
Fold: Prealbumin-like
Superfamily: Aromatic compound dioxygenase
Family: Aromatic compound dioxygenase

Phyre2

PDB 3pcc chain M

3D model

Region: 748 - 791
Aligned: 44
Modelled: 44
Confidence: 91.5%
Identity: 27%
Fold: Prealbumin-like
Superfamily: Aromatic compound dioxygenase
Family: Aromatic compound dioxygenase

Phyre2

PDB 2azq chain A

3D model

Region: 748 - 791
Aligned: 44
Modelled: 44
Confidence: 89.7%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1

Phyre2

PDB 3n9t chain A

3D model

Region: 748 - 807
Aligned: 60
Modelled: 60
Confidence: 88.9%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4

Phyre2

PDB 3pdg chain A

3D model

Region: 286 - 343
Aligned: 56
Modelled: 58
Confidence: 87.6%
Identity: 13%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2
1

c3rfzB_
2

c3ohnA_
3

c2vqiA_
4

d1zdva1
5

c3fcgB_
6

d3bwud1
7

d1zdxa1
8

c3l48B_
9

c2xetB_
10

c1uwyA_
11

d1h8la1
12

d1uwya1
13

c2nsmA_
14

c1h8lA_
15

c3mn8A_
16

d2burb1
17

d3pccm_
18

c2azqA_
19

c3n9tA_
20

c3pdgA_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_



100.0 12 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c3ohnA_



100.0 12 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
3c2vqiA_



100.0 15 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
4d1zdva1



99.9 18 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5c3fcgB_



99.8 18 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
6d3bwud1



99.7 16 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
7d1zdxa1



99.7 19 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
8c3l48B_



99.4 16 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
9c2xetB_



99.3 10 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
10c1uwyA_



95.5 17 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
11d1h8la1



95.3 15 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
12d1uwya1



94.8 21 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
13c2nsmA_



94.8 17 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
14c1h8lA_



94.6 15 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
15c3mn8A_



94.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:lp15968p;
PDBTitle: structure of drosophila melanogaster carboxypeptidase d isoform 1b2 short
16d2burb1



91.8 43 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
17d3pccm_



91.5 27 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
18c2azqA_



89.7 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1
19c3n9tA_



88.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:pnpc;
PDBTitle: cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas2 putida dll-e4
20c3pdgA_



87.6 13 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
21c3hj8A_



not modelled 87.0 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure determination of catechol 1,2-dioxygenase from2 rhodococcus opacus 1cp in complex with 4-chlorocatechol
22d1nkga1



not modelled 87.0 15 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
23d1s9aa_



not modelled 86.8 25 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
24c1tmxA_



not modelled 86.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from2 nocardioides simplex 3e
25c3pe9B_



not modelled 86.4 12 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
26c3e8vA_



not modelled 86.3 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:possible transglutaminase-family protein;
PDBTitle: crystal structure of a possible transglutaminase-family2 protein proteolytic fragment from bacteroides fragilis
27c2xsuA_



not modelled 86.1 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2 dioxygenase;
PDBTitle: crystal structure of the a72g mutant of acinetobacter2 radioresistens catechol 1,2 dioxygenase
28c2boyC_



not modelled 82.0 26 PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from2 rhodococcus opacus 1cp
29d1dmha_



not modelled 80.6 32 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
30c3pe9D_



not modelled 80.2 15 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
31c2vnvC_



not modelled 71.4 14 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
32d3pcca_



not modelled 64.3 23 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
33d2q9oa2



not modelled 62.1 14 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
34c1d2pA_



not modelled 55.4 15 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
35d1w0na_



not modelled 55.2 15 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
36c3pe9A_



not modelled 52.1 14 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
37c3pe9C_



not modelled 52.1 14 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
38d2bura1



not modelled 51.8 20 Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
39d1kyaa2



not modelled 49.8 15 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
40d1hfua2



not modelled 48.7 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
41c2w87B_



not modelled 44.4 13 PDB header:hydrolase
Chain: B: PDB Molecule:esterase d;
PDBTitle: xyl-cbm35 in complex with glucuronic acid containing2 disaccharide.
42d1aoza2



not modelled 42.1 17 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
43d1v10a2



not modelled 41.8 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
44d1cwva2



not modelled 41.0 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
45c2r32A_



not modelled 40.0 19 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
46d1cwva1



not modelled 38.9 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
47d1gyca2



not modelled 36.9 15 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
48d1edqa1



not modelled 35.4 9 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
49c3d33B_



not modelled 32.9 13 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
50c2x5pA_



not modelled 25.4 19 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
51c3ottB_



not modelled 24.6 15 PDB header:transcription
Chain: B: PDB Molecule:two-component system sensor histidine kinase;
PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron
52c2crvA_



not modelled 24.6 19 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of c-terminal domain of mitochondrial2 translational initiationfactor 2
53c3c12A_



not modelled 21.7 18 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
54c3b9eA_



not modelled 21.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
55c1bprA_



not modelled 21.4 21 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
56c3uotB_



not modelled 20.4 12 PDB header:cell cycle
Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1;
PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus
57d1f00i1



not modelled 20.2 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
58c1u00A_



not modelled 20.1 12 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
59d1u00a2



not modelled 19.6 19 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
60c3osvC_



not modelled 19.6 18 PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
61c3n8eA_



not modelled 19.0 17 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
62c3pddA_



not modelled 18.2 11 PDB header:unknown function
Chain: A: PDB Molecule:glycoside hydrolase, family 9;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
63c3dpqE_



not modelled 16.3 21 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
64d1thqa_



not modelled 15.9 6 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane enzyme PagP
65d1cwva3



not modelled 15.8 15 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
66d1ulva2



not modelled 15.2 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
67d1o75a2



not modelled 14.0 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Tp47 lipoprotein, middle and C-terminal domains
Family:Tp47 lipoprotein, middle and C-terminal domains
68d1d1na_



not modelled 13.6 17 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
69c1cwvA_



not modelled 12.1 17 PDB header:structural protein
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein
70c3dqgC_



not modelled 11.4 16 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
71d1yuwa1



not modelled 11.3 17 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
72d1zata1



not modelled 10.7 18 Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
73d2o14a1



not modelled 10.1 40 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:YxiM N-terminal domain-like
74d2i02a1



not modelled 9.9 8 Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
75c2hklB_



not modelled 9.5 20 PDB header:transferase
Chain: B: PDB Molecule:l,d-transpeptidase;
PDBTitle: crystal structure of enterococcus faecium l,d-2 transpeptidase c442s mutant
76c2qkiA_



not modelled 9.1 11 PDB header:immune system/hydrolase inhibitor
Chain: A: PDB Molecule:complement c3;
PDBTitle: human c3c in complex with the inhibitor compstatin
77c1motA_



not modelled 9.1 14 PDB header:membrane protein
Chain: A: PDB Molecule:glycine receptor alpha-1 chain;
PDBTitle: nmr structure of extended second transmembrane domain of2 glycine receptor alpha1 subunit in sds micelles
78c2xr4A_



not modelled 9.0 19 PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia
79c2op6A_



not modelled 8.9 21 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
80c1cvrA_



not modelled 8.6 12 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:gingipain r;
PDBTitle: crystal structure of the arg specific cysteine proteinase gingipain r2 (rgpb)
81c2kppA_



not modelled 8.3 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
82c2w3jA_



not modelled 8.3 10 PDB header:sugar-binding protein
Chain: A: PDB Molecule:carbohydrate binding module;
PDBTitle: structure of a family 35 carbohydrate binding module from2 an environmental isolate
83d2je8a4



not modelled 8.2 10 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
84d1v8ha1



not modelled 7.9 4 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
85c3k1dA_



not modelled 7.9 22 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
86c1ug9A_



not modelled 7.6 16 PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
87c1vryA_



not modelled 7.4 8 PDB header:membrane protein
Chain: A: PDB Molecule:glycine receptor alpha-1 chain;
PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor
88d1yq2a3



not modelled 7.4 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
89d1c8ua1



not modelled 7.4 13 Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:Acyl-CoA thioesterase
90d3btaa1



not modelled 7.3 15 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Clostridium neurotoxins, the second last domain
91c2nn6I_



not modelled 7.2 12 PDB header:hydrolase/transferase
Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
92d1dkza2



not modelled 7.2 20 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
93c3dnoC_



not modelled 7.2 13 PDB header:viral protein
Chain: C: PDB Molecule:hiv-1 envelope glycoprotein gp120;
PDBTitle: molecular structure for the hiv-1 gp120 trimer in the cd4-2 bound state
94c3pvmB_



not modelled 7.2 13 PDB header:immune system
Chain: B: PDB Molecule:cobra venom factor;
PDBTitle: structure of complement c5 in complex with cvf
95c2w1wB_



not modelled 7.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:lipolytic enzyme, g-d-s-l;
PDBTitle: native structure of a family 35 carbohydrate binding module2 from clostridium thermocellum
96d1qbea_



not modelled 6.8 12 Fold:RNA bacteriophage capsid protein
Superfamily:RNA bacteriophage capsid protein
Family:RNA bacteriophage capsid protein
97c2xwxB_



not modelled 6.8 11 PDB header:chitin-binding protein
Chain: B: PDB Molecule:glcnac-binding protein a;
PDBTitle: vibrio cholerae colonization factor gbpa crystal structure
98c3kptA_



not modelled 6.7 20 PDB header:cell adhesion
Chain: A: PDB Molecule:collagen adhesion protein;
PDBTitle: crystal structure of bcpa, the major pilin subunit of2 bacillus cereus
99d2vmha1



not modelled 6.6 12 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:NPCBM-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0