Email l.a.kelley@imperial.ac.uk Description P0AFI2 Date Thu Jan 5 11:26:24 GMT 2012 Unique Job ID 16d057a4f14e350b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zvuA_ 100.0 99 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 2 c2xcsD_ 100.0 45 PDB header:isomerase Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna 3 c2xkjE_ 100.0 67 PDB header:isomerase Chain: E: PDB Molecule:topoisomerase iv; PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate) 4 c2wl2B_ 100.0 46 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 5 c3ifzA_ 100.0 41 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution 6 d1ab4a_ 100.0 47 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 7 c2xcqA_ 100.0 47 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a; PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase 8 c3ilwA_ 100.0 41 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain 9 c2inrA_ 100.0 42 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 10 c2novD_ 100.0 42 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target 11 c3qx3B_ 100.0 22 PDB header:isomerase/dna/isomerase inhibitor Chain: B: PDB Molecule:dna topoisomerase 2-beta; PDBTitle: human topoisomerase iibeta in complex with dna and etoposide 12 c1bjtA_ 100.0 23 PDB header:topoisomerase Chain: A: PDB Molecule:topoisomerase ii; PDBTitle: topoisomerase ii residues 409-1201 13 d1bjta_ 100.0 23 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 14 c3l6vA_ 100.0 20 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the xanthomonas campestris gyrase a c-2 terminal domain 15 d1wp5a_ 100.0 15 Fold:6-bladed beta-propeller Superfamily:GyrA/ParC C-terminal domain-like Family:GyrA/ParC C-terminal domain-like 16 c1zvtA_ 100.0 100 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the e. coli parc c-terminal domain 17 c1zi0A_ 100.0 18 PDB header:isomerase, dna bindng protein Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: a superhelical spiral in escherichia coli dna gyrase a c-2 terminal domain imparts unidirectional supercoiling bias 18 d1suua_ 100.0 16 Fold:6-bladed beta-propeller Superfamily:GyrA/ParC C-terminal domain-like Family:GyrA/ParC C-terminal domain-like 19 c3no0B_ 100.0 18 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: aquifex aeolicus type iia topoisomerase c-terminal domain 20 d1x75a1 99.9 48 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 21 c3ku8A_ not modelled 99.9 48 PDB header:toxin/isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: ccdbvfi:gyra14ec 22 c1t3jA_ not modelled 91.6 23 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 23 c3fokH_ not modelled 63.4 23 PDB header:structural genomics, unknown function Chain: H: PDB Molecule:uncharacterized protein cgl0159; PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115 24 c2qjhH_ not modelled 47.9 11 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 25 c1c9lA_ not modelled 44.7 10 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:clathrin; PDBTitle: peptide-in-groove interactions link target proteins to the2 b-propeller of clathrin 26 c3a7pB_ not modelled 44.7 17 PDB header:protein transport Chain: B: PDB Molecule:autophagy protein 16; PDBTitle: the crystal structure of saccharomyces cerevisiae atg16 27 d2v8qb1 not modelled 43.3 28 Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like 28 c1xi4D_ not modelled 41.4 10 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:clathrin heavy chain; PDBTitle: clathrin d6 coat 29 c2oajA_ not modelled 40.4 11 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 30 d1q1ha_ not modelled 38.6 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcription factor E/IIe-alpha, N-terminal domain 31 c1q1hA_ not modelled 38.6 22 PDB header:transcription Chain: A: PDB Molecule:transcription factor e; PDBTitle: an extended winged helix domain in general transcription2 factor e/iie alpha 32 d1iwpa_ not modelled 37.4 20 Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:Diol dehydratase, alpha subunit 33 d1ivsa1 not modelled 34.4 23 Fold:Long alpha-hairpin Superfamily:tRNA-binding arm Family:Valyl-tRNA synthetase (ValRS) C-terminal domain 34 c1bpoA_ not modelled 33.6 10 PDB header:membrane protein Chain: A: PDB Molecule:protein (clathrin); PDBTitle: clathrin heavy-chain terminal domain and linker 35 c3gndC_ not modelled 33.0 15 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 36 c1u0iA_ not modelled 33.0 33 PDB header:de novo protein Chain: A: PDB Molecule:iaal-e3; PDBTitle: iaal-e3/k3 heterodimer 37 c2q6tB_ not modelled 32.5 20 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 38 d2qrdb1 not modelled 32.4 27 Fold:AMPKBI-like Superfamily:AMPKBI-like Family:AMPKBI-like 39 c2vyeA_ not modelled 31.9 21 PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex 40 d2c6ya1 not modelled 28.8 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 41 c1ik9B_ not modelled 28.6 12 PDB header:gene regulation/ligase Chain: B: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of a xrcc4-dna ligase iv complex 42 c2pqaB_ not modelled 28.4 33 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 43 c3ushB_ not modelled 25.9 30 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q2s0r5 protein from salinibacter ruber,2 northeast structural genomics consortium target srr207 44 d1ji6a1 not modelled 25.7 21 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 45 d1b4ua_ not modelled 25.6 18 Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB 46 d2ajfa1 not modelled 25.6 18 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Neurolysin-like 47 d1a6qa1 not modelled 25.2 21 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 48 c2zezC_ not modelled 25.1 35 PDB header:hydrolase Chain: C: PDB Molecule:s-layer associated multidomain endoglucanase; PDBTitle: family 16 carbohydrate binding module-2 49 d2pi2e1 not modelled 25.0 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 50 c1deqF_ not modelled 24.1 16 PDB header: PDB COMPND: 51 d1utca2 not modelled 23.5 10 Fold:7-bladed beta-propeller Superfamily:Clathrin heavy-chain terminal domain Family:Clathrin heavy-chain terminal domain 52 d1wi9a_ not modelled 23.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 53 c1n73C_ not modelled 22.9 10 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 54 c3dm0A_ not modelled 22.1 13 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 55 c3afcB_ not modelled 21.9 13 PDB header:signaling protein Chain: B: PDB Molecule:semaphorin-6a; PDBTitle: mouse semaphorin 6a extracellular domain 56 c3lssA_ not modelled 21.9 13 PDB header:ligase Chain: A: PDB Molecule:seryl-trna synthetase; PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp 57 c3icgD_ not modelled 21.3 17 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 58 d1a06a_ not modelled 21.2 25 Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Protein kinases, catalytic subunit 59 c3a7mA_ not modelled 20.6 20 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:flagellar protein flit; PDBTitle: structure of flit, the flagellar type iii chaperone for flid 60 c2hpcF_ not modelled 20.2 19 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 61 c2r60A_ not modelled 20.1 20 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 62 c2xzrA_ not modelled 20.1 10 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 63 c2jjmH_ not modelled 19.9 26 PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558. 64 d1k32a3 not modelled 19.8 9 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 65 c2dfdD_ not modelled 19.6 18 PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of human malate dehydrogenase type 2 66 d1n0ua3 not modelled 19.4 26 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 67 c3al8B_ not modelled 19.3 14 PDB header:signaling protein Chain: B: PDB Molecule:plexin-a2; PDBTitle: plexin a2 / semaphorin 6a complex 68 d2a84a1 not modelled 19.3 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) 69 c1xp4C_ not modelled 19.0 12 PDB header:hydrolase Chain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase; PDBTitle: crystal structure of a peptidoglycan synthesis regulatory2 factor (pbp3) from streptococcus pneumoniae 70 c2jesG_ not modelled 18.9 10 PDB header:viral protein Chain: G: PDB Molecule:portal protein; PDBTitle: portal protein from bacteriophage spp1 71 c2pwzG_ not modelled 18.6 15 PDB header:oxidoreductase Chain: G: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of the apo form of e.coli malate dehydrogenase 72 c1tvfA_ not modelled 18.2 14 PDB header:penicillin binding Chain: A: PDB Molecule:penicillin binding protein 4; PDBTitle: crystal structure of penicillin-binding protein 4 (pbp4)2 from staphylococcus aureus 73 d1mlda2 not modelled 17.9 18 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 74 c3dzcA_ not modelled 17.8 18 PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. 75 d2dloa1 not modelled 17.7 71 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 76 d1xata_ not modelled 16.7 9 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 77 d1egwa_ not modelled 16.4 8 Fold:SRF-like Superfamily:SRF-like Family:SRF-like 78 d1qpoa1 not modelled 16.2 20 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 79 c2paxA_ not modelled 16.1 21 PDB header:transferase Chain: A: PDB Molecule:poly(adp-ribose) polymerase; PDBTitle: the catalytic fragment of poly(adp-ribose) polymerase2 complexed with 4-amino-1,8-naphthalimide 80 d1flca2 not modelled 16.1 28 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Esterase domain of haemagglutinin-esterase-fusion glycoprotein HEF1 81 c3l31B_ not modelled 16.1 17 PDB header:hydrolase Chain: B: PDB Molecule:probable manganase-dependent inorganic PDBTitle: crystal structure of the cbs and drtgg domains of the2 regulatory region of clostridium perfringens3 pyrophosphatase complexed with the inhibitor, amp 82 c1mldA_ not modelled 16.0 18 PDB header:oxidoreductase(nad(a)-choh(d)) Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases 83 d2g0da1 not modelled 15.9 14 Fold:alpha/alpha toroid Superfamily:LanC-like Family:LanC-like 84 d1j36a_ not modelled 15.9 14 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Neurolysin-like 85 c3al9B_ not modelled 15.7 12 PDB header:signaling protein Chain: B: PDB Molecule:plexin-a2; PDBTitle: mouse plexin a2 extracellular domain 86 c3idwA_ not modelled 15.6 13 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 87 c1dpuA_ not modelled 15.1 12 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 88 d1dpua_ not modelled 15.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 89 c3oktA_ not modelled 15.0 12 PDB header:signaling protein Chain: A: PDB Molecule:plexin-a2; PDBTitle: mouse plexin a2, extracellular domains 1-4 90 d1rp3a2 not modelled 14.5 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 91 d1y0ua_ not modelled 14.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ArsR-like transcriptional regulators 92 c3okyA_ not modelled 14.4 12 PDB header:signaling protein Chain: A: PDB Molecule:plexin-a2; PDBTitle: plexin a2 in complex with semaphorin 6a 93 c1flcA_ not modelled 14.3 28 PDB header:hydrolase Chain: A: PDB Molecule:haemagglutinin-esterase-fusion glycoprotein; PDBTitle: x-ray structure of the haemagglutinin-esterase-fusion glycoprotein of2 influenza c virus 94 c2gejA_ not modelled 14.3 24 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man 95 d1ku7a_ not modelled 14.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 96 c3c4vB_ not modelled 14.0 32 PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p. 97 c2p9mD_ not modelled 14.0 13 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0922; PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661 98 d1mi8a_ not modelled 13.8 18 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Intein (protein splicing domain) 99 d1dlca1 not modelled 13.7 21 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain