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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1bjtA_

Fold library idPDB HeaderMoleculeTitle
c1bjtA_PDB header: topoisomeraseChain: A: PDB Molecule: topoisomerase ii;PDBTitle: topoisomerase ii residues 409-1201


Added to library: Tue Mar 16 12:46:03 2010
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREALKNA
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Known secondary structure (DSSP)





S
TT
B

TTTTSGGGGG
S
SSS



S


-

 .........80.........90.........100.........110.........120.........130.........140
Sequence EIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDSHIKGLIINFLESSFLGLLDIQGFLLEFITPIIKVSI
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Known secondary structure (DSSP) T

SSB

S
SSSSS
S


BTTTTTSTTS



S
 .........150.........160.........170.........180.........190.........200.........210
Sequence TKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQWLRQYEP
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Known secondary structure (DSSP)
SS

SSTTTTS






STT





S

 .........220.........230.........240.........250.........260.........270.........280
Sequence FINKELILFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQT
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Known secondary structure (DSSP)

TS
BTTT


T

S
T

SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence IIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVE
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Known secondary structure (DSSP)

STTS
SS
SS



TTTTSTT


GGG

TTS
GGGGGGS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence PEWYLPILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWFRGWTGTIEEIEPLRY
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Known secondary structure (DSSP) S



SS
T

SS


B
TT






B

TT

STT
 .........430.........440.........450.........460.........470.........480.........490
Sequence RMYGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAK
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Known secondary structure (DSSP)
TT

TT

S

TTS






SSS



 .........500.........510.........520.........530.........540.........550.........560
Sequence TRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYS
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Known secondary structure (DSSP)
TT

TT
TTS
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence FQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPEELYGTYEYLLGMRIWSLTKERY
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Known secondary structure (DSSP) TTSS

TT

TT


TT


S


TTT
BSTS
GGGGS
 .........640.........650.........660.........670.........
Sequence QKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARG
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Known secondary structure (DSSP) TS
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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