Email l.a.kelley@imperial.ac.uk Description P75978 Date Thu Jan 5 12:16:50 GMT 2012 Unique Job ID 11deb4b5fac7359e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ezkB_ 99.9 11 PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions 2 c2o0hA_ 99.1 12 PDB header:hydrolase Chain: A: PDB Molecule:dna packaging protein gp17; PDBTitle: t4 gp17 atpase domain mutant complexed with atp 3 c3c6aA_ 96.0 10 PDB header:viral protein Chain: A: PDB Molecule:terminase large subunit; PDBTitle: crystal structure of the rb49 gp17 nuclease domain 4 c2wbnA_ 91.0 11 PDB header:viral protein Chain: A: PDB Molecule:terminase large subunit; PDBTitle: crystal structure of the g2p (large terminase) nuclease2 domain from the bacteriophage spp1 5 c3llmB_ 81.5 24 PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase 6 c2f55C_ 72.3 17 PDB header:hydrolase/dna Chain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna 7 c1cu1B_ 71.9 18 PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus 8 c1a1vA_ 69.1 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna 9 d1a1va1 68.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 10 c3l9oA_ 53.4 7 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome 11 c2xgjA_ 53.1 8 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance 12 c3kx2A_ 50.8 25 PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp 13 c3dkpA_ 47.3 11 PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52; PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp 14 d1yksa1 46.3 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase 15 c2qeqA_ 46.1 15 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase 16 d1tf5a3 45.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 17 c2jlrA_ 44.9 15 PDB header:hydrolase Chain: A: PDB Molecule:serine protease subunit ns3; PDBTitle: dengue virus 4 ns3 helicase in complex with amppnp 18 c1ymfA_ 44.3 16 PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp 19 c3ly5A_ 43.5 9 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx18; PDBTitle: ddx18 dead-domain 20 d1eiwa_ 43.0 17 Fold:Flavodoxin-like Superfamily:Hypothetical protein MTH538 Family:Hypothetical protein MTH538 21 d1qwga_ not modelled 42.6 13 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 22 d1rifa_ not modelled 37.7 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:DNA helicase UvsW 23 c2z83A_ not modelled 36.9 13 PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 24 d2nu7b1 not modelled 36.9 22 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 25 c2wv9A_ not modelled 36.7 15 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus 26 c2va8A_ not modelled 34.3 12 PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 27 d1vhxa_ not modelled 32.6 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 28 c1qfqB_ not modelled 30.7 38 PDB header:transcription/rna Chain: B: PDB Molecule:36-mer n-terminal peptide of the n protein; PDBTitle: bacteriophage lambda n-protein-nutboxb-rna complex 29 c3ngjC_ not modelled 30.6 11 PDB header:lyase Chain: C: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica 30 d1ub3a_ not modelled 30.3 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 31 c3b6eA_ not modelled 30.1 13 PDB header:hydrolase Chain: A: PDB Molecule:interferon-induced helicase c domain-containing protein 1; PDBTitle: crystal structure of human dech-box rna helicase mda5 (melanoma2 differentiation-associated protein 5), dech-domain 32 c2zj2A_ not modelled 29.4 15 PDB header:hydrolase Chain: A: PDB Molecule:putative ski2-type helicase; PDBTitle: archaeal dna helicase hjm apo state in form 1 33 d1hv8a1 not modelled 26.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 34 c2zpaB_ not modelled 26.2 18 PDB header:transferase Chain: B: PDB Molecule:uncharacterized protein ypfi; PDBTitle: crystal structure of trna(met) cytidine acetyltransferase 35 d1kyqa2 not modelled 25.8 22 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 36 d1lrza2 not modelled 25.3 18 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 37 d1s2ma1 not modelled 22.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 38 d1kfia3 not modelled 22.1 12 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 39 c3oa3A_ not modelled 20.7 11 PDB header:lyase Chain: A: PDB Molecule:aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis 40 c4a4zA_ not modelled 19.9 13 PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp 41 c2ixsB_ not modelled 19.7 22 PDB header:hydrolase Chain: B: PDB Molecule:sdai restriction endonuclease; PDBTitle: structure of sdai restriction endonuclease 42 c3o3nB_ not modelled 19.5 13 PDB header:lyase Chain: B: PDB Molecule:beta-subunit 2-hydroxyacyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 43 c1gm5A_ not modelled 18.5 13 PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction 44 d2fz4a1 not modelled 18.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 45 c3rc8A_ not modelled 17.2 17 PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment 46 c2vbcA_ not modelled 16.0 15 PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus 47 d1o0ya_ not modelled 15.9 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 48 d1n7ka_ not modelled 14.5 8 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 49 d2eyqa3 not modelled 14.2 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 50 c3berA_ not modelled 14.1 7 PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx47; PDBTitle: human dead-box rna-helicase ddx47, conserved domain i in complex with2 amp 51 d3pmga3 not modelled 12.5 15 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 52 c2p6uA_ not modelled 12.4 21 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 53 d1uaaa2 not modelled 11.2 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 54 d1gm5a3 not modelled 11.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 55 d1uc8a1 not modelled 10.3 11 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 56 d1q0ua_ not modelled 10.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 57 c2v6jA_ not modelled 10.2 11 PDB header:hydrolase Chain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr 58 d1mzra_ not modelled 9.6 9 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 59 d2dl6a1 not modelled 9.2 11 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 60 d2htja1 not modelled 9.2 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FaeA-like 61 d2g9na1 not modelled 8.8 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 62 d1wp9a1 not modelled 8.6 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 63 c3pxiB_ not modelled 8.5 12 PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc 64 d1hxra_ not modelled 8.4 5 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 65 d1oywa2 not modelled 8.3 24 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 66 c3o3nA_ not modelled 8.3 4 PDB header:lyase Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase; PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa 67 d1mv5a_ not modelled 8.1 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 68 d2p6ra3 not modelled 8.1 26 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 69 d1nkta3 not modelled 7.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 70 d2fu5a1 not modelled 7.9 5 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 71 d1gkub1 not modelled 7.9 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Helicase-like "domain" of reverse gyrase 72 d1hjra_ not modelled 7.9 14 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 73 c2vl7A_ not modelled 7.8 11 PDB header:unknown function Chain: A: PDB Molecule:xpd; PDBTitle: structure of s. tokodaii xpd4 74 c3n6jA_ not modelled 7.6 15 PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from actinobacillus succinogenes 130z 75 d2ckaa1 not modelled 7.2 9 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 76 c2ckaA_ not modelled 7.2 9 PDB header:hydrolase Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8; PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction 77 d2e8aa1 not modelled 6.8 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 78 c2chvE_ not modelled 6.7 13 PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex 79 c3d8bB_ not modelled 6.7 15 PDB header:hydrolase Chain: B: PDB Molecule:fidgetin-like protein 1; PDBTitle: crystal structure of human fidgetin-like protein 1 in complex with adp 80 c2r2aB_ not modelled 6.7 20 PDB header:toxin Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal domain of zonular occludens toxin from2 neisseria meningitidis 81 c3fe2B_ not modelled 6.6 13 PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx5; PDBTitle: human dead-box rna helicase ddx5 (p68), conserved domain i in complex2 with adp 82 d2fwra2 not modelled 6.5 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 83 d1pjqa3 not modelled 6.5 28 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 84 d1mzha_ not modelled 6.3 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 85 d2j0sa1 not modelled 6.3 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 86 c2fsgA_ not modelled 6.3 16 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: complex seca:atp from escherichia coli 87 d1fx0b1 not modelled 6.2 18 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 88 c3pfiB_ not modelled 5.9 19 PDB header:hydrolase Chain: B: PDB Molecule:holliday junction atp-dependent dna helicase ruvb; PDBTitle: 2.7 angstrom resolution crystal structure of a probable holliday2 junction dna helicase (ruvb) from campylobacter jejuni subsp. jejuni3 nctc 11168 in complex with adenosine-5'-diphosphate 89 c3iuyB_ not modelled 5.7 14 PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain 90 d1ir1s_ not modelled 5.6 20 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 91 c3o0kB_ not modelled 5.4 7 PDB header:oxidoreductase Chain: B: PDB Molecule:aldo/keto reductase; PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis 92 c1nsfA_ not modelled 5.4 20 PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) 93 d1fvpa_ not modelled 5.3 33 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 94 d1u83a_ not modelled 5.3 12 Fold:TIM beta/alpha-barrel Superfamily:(2r)-phospho-3-sulfolactate synthase ComA Family:(2r)-phospho-3-sulfolactate synthase ComA 95 c1u83A_ not modelled 5.3 12 PDB header:lyase Chain: A: PDB Molecule:phosphosulfolactate synthase; PDBTitle: psl synthase from bacillus subtilis 96 d1nnva_ not modelled 5.3 14 Fold:Cystatin-like Superfamily:Putative dsDNA mimic Family:Putative dsDNA mimic 97 c1qhhB_ not modelled 5.2 6 PDB header:hydrolase Chain: B: PDB Molecule:protein (pcra (subunit)); PDBTitle: structure of dna helicase with adpnp 98 d2v0ea1 not modelled 5.1 25 Fold:GYF/BRK domain-like Superfamily:BRK domain-like Family:BRK domain-like 99 d2fkia1 not modelled 5.1 17 Fold:Secretion chaperone-like Superfamily:YjbR-like Family:YjbR-like