Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP13036
DateThu Jan 5 11:33:31 GMT 2012
Unique Job ID0fe111a23c9297f4

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2iahA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:ferripyoverdine receptor;
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
Confidence and coverage
Confidence:100.0% Coverage: 92%
714 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTPLRVFRKTTPLVNTIRLSLLPLAGLSFSAFAAQVNIAPGSLDKALNQYAAHSGFTLSV
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   .........70.........80.........90.........100.........110.........120
Sequence  DASLTRGKQSNGLHGDYDVESGLQQLLDGSGLQVKPLGNNSWTLEPAPAPKEDALTVVGD
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?
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   .........130.........140.........150.........160.........170.........180
Sequence  WLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNF
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   .........190.........200.........210.........220.........230.........240
Sequence  GIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQS
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   .........250.........260.........270.........280.........290.........300
Sequence  VGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTADNGFGTALLYSGT
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   .........310.........320.........330.........340.........350.........360
Sequence  RGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQST
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   .........370.........380.........390.........400.........410.........420
Sequence  RPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGI
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   .........430.........440.........450.........460.........470.........480
Sequence  EPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAH
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   .........490.........500.........510.........520.........530.........540
Sequence  AWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNL
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   .........550.........560.........570.........580.........590.........600
Sequence  YANTEGSFGTVQYSQIGKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYD
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   .........610.........620.........630.........640.........650.........660
Sequence  SNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKGDTYGNL
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   .........670.........680.........690.........700.........710.........720
Sequence  VPFSPKHKGTLGVDYKPGNWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGAR
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   .........730.........740.........750.........760.........770....
Sequence  VAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF
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?
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2iah chain A

3D model

Region: 32 - 774
Aligned: 714
Modelled: 738
Confidence: 100.0%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:ferripyoverdine receptor;
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.

Phyre2

PDB 1kmo chain A

3D model

Region: 118 - 774
Aligned: 657
Modelled: 657
Confidence: 100.0%
Identity: 99%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Ligand-gated protein channel

Phyre2

PDB 1po3 chain A

3D model

Region: 128 - 774
Aligned: 647
Modelled: 647
Confidence: 100.0%
Identity: 100%
PDB header:membrane protein
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca
PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate

Phyre2

PDB 1by5 chain A

3D model

Region: 105 - 774
Aligned: 636
Modelled: 665
Confidence: 100.0%
Identity: 16%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Ligand-gated protein channel

Phyre2

PDB 2grx chain B

3D model

Region: 107 - 774
Aligned: 636
Modelled: 636
Confidence: 100.0%
Identity: 16%
PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-iron receptor;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome

Phyre2

PDB 3qlb chain A

3D model

Region: 107 - 774
Aligned: 631
Modelled: 655
Confidence: 100.0%
Identity: 16%
PDB header:metal transport
Chain: A: PDB Molecule:enantio-pyochelin receptor;
PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin

Phyre2

PDB 1xkh chain C

3D model

Region: 107 - 774
Aligned: 639
Modelled: 662
Confidence: 100.0%
Identity: 13%
PDB header:membrane protein
Chain: C: PDB Molecule:ferripyoverdine receptor;
PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine

Phyre2

PDB 1xkw chain A

3D model

Region: 111 - 774
Aligned: 632
Modelled: 649
Confidence: 100.0%
Identity: 14%
PDB header:membrane protein
Chain: A: PDB Molecule:fe(iii)-pyochelin receptor;
PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa

Phyre2

PDB 3fhh chain A

3D model

Region: 116 - 774
Aligned: 593
Modelled: 626
Confidence: 100.0%
Identity: 16%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane heme receptor shua;
PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae

Phyre2

PDB 2guf chain A domain 1

3D model

Region: 118 - 774
Aligned: 545
Modelled: 573
Confidence: 100.0%
Identity: 18%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Ligand-gated protein channel

Phyre2

PDB 1fep chain A

3D model

Region: 117 - 774
Aligned: 639
Modelled: 651
Confidence: 100.0%
Identity: 14%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Ligand-gated protein channel

Phyre2

PDB 3efm chain A

3D model

Region: 109 - 751
Aligned: 558
Modelled: 581
Confidence: 100.0%
Identity: 17%
PDB header:membrane protein
Chain: A: PDB Molecule:ferric alcaligin siderophore receptor;
PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis

Phyre2

PDB 3csl chain B

3D model

Region: 127 - 774
Aligned: 632
Modelled: 648
Confidence: 100.0%
Identity: 13%
PDB header:membrane protein/heme binding protein
Chain: B: PDB Molecule:hasr protein;
PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme

Phyre2

PDB 2hdi chain A

3D model

Region: 117 - 774
Aligned: 569
Modelled: 593
Confidence: 100.0%
Identity: 16%
PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.

Phyre2

PDB 2d1u chain A

3D model

Region: 35 - 131
Aligned: 97
Modelled: 97
Confidence: 99.8%
Identity: 98%
PDB header:metal transport
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca;
PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli

Phyre2

PDB 1zzv chain A

3D model

Region: 35 - 113
Aligned: 79
Modelled: 79
Confidence: 99.8%
Identity: 100%
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca;
PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli.

Phyre2

PDB 2a02 chain A

3D model

Region: 31 - 111
Aligned: 81
Modelled: 81
Confidence: 99.4%
Identity: 27%
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor;
PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida.

Phyre2

PDB 1t16 chain A

3D model

Region: 524 - 774
Aligned: 239
Modelled: 251
Confidence: 99.2%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Outer membrane protein transport protein

Phyre2

PDB 3dwo chain X

3D model

Region: 518 - 726
Aligned: 205
Modelled: 209
Confidence: 98.9%
Identity: 16%
PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue

Phyre2

PDB 3brz chain A

3D model

Region: 516 - 725
Aligned: 190
Modelled: 198
Confidence: 97.6%
Identity: 15%
PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx

Phyre2
1

c2iahA_
2

d1kmoa_
3

c1po3A_
4

d1by5a_
5

c2grxB_
6

c3qlbA_
7

c1xkhC_
8

c1xkwA_
9

c3fhhA_
10

d2gufa1
11

d1fepa_
12

c3efmA_
13

c3cslB_
14

c2hdiA_
15

c2d1uA_
16

c1zzvA_
17

c2a02A_
18

d1t16a_
19

c3dwoX_
20

c3brzA_
21



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78






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2iahA_



100.0 15 PDB header:membrane protein
Chain: A: PDB Molecule:ferripyoverdine receptor;
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
2d1kmoa_



100.0 99 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
3c1po3A_



100.0 100 PDB header:membrane protein
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca
PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate
4d1by5a_



100.0 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
5c2grxB_



100.0 16 PDB header:metal transport
Chain: B: PDB Molecule:ferrichrome-iron receptor;
PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome
6c3qlbA_



100.0 16 PDB header:metal transport
Chain: A: PDB Molecule:enantio-pyochelin receptor;
PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin
7c1xkhC_



100.0 13 PDB header:membrane protein
Chain: C: PDB Molecule:ferripyoverdine receptor;
PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine
8c1xkwA_



100.0 14 PDB header:membrane protein
Chain: A: PDB Molecule:fe(iii)-pyochelin receptor;
PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa
9c3fhhA_



100.0 16 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane heme receptor shua;
PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae
10d2gufa1



100.0 18 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
11d1fepa_



100.0 14 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Ligand-gated protein channel
12c3efmA_



100.0 17 PDB header:membrane protein
Chain: A: PDB Molecule:ferric alcaligin siderophore receptor;
PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis
13c3cslB_



100.0 13 PDB header:membrane protein/heme binding protein
Chain: B: PDB Molecule:hasr protein;
PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme
14c2hdiA_



100.0 16 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
15c2d1uA_



99.8 98 PDB header:metal transport
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca;
PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli
16c1zzvA_



99.8 100 PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca;
PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli.
17c2a02A_



99.4 27 PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor;
PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida.
18d1t16a_



99.2 17 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
19c3dwoX_



98.9 16 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
20c3brzA_



97.6 15 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
21c2y9kG_



not modelled 96.7 18 PDB header:protein transport
Chain: G: PDB Molecule:protein invg;
PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
22c3gr5A_



not modelled 95.8 14 PDB header:membrane protein
Chain: A: PDB Molecule:escc;
PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec)
23c3ezjA_



not modelled 91.8 18 PDB header:protein transport
Chain: A: PDB Molecule:general secretion pathway protein gspd;
PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody
24c3ossD_



not modelled 89.1 18 PDB header:protein transport
Chain: D: PDB Molecule:type 2 secretion system, secretin gspd;
PDBTitle: the crystal structure of enterotoxigenic escherichia coli gspc-gspd2 complex from the type ii secretion system
25c3bryB_



not modelled 87.4 16 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
26c2k0lA_



not modelled 81.8 8 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
27d1g90a_



not modelled 79.7 20 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
28c2y3mA_



not modelled 79.4 11 PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein hofq;
PDBTitle: structure of the extra-membranous domain of the secretin2 hofq from actinobacillus actinomycetemcomitans
29d1qjpa_



not modelled 70.0 18 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
30c3qraA_



not modelled 65.4 12 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
31c2x27X_



not modelled 63.4 12 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
32d1p4ta_



not modelled 61.0 13 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
33c2iwvD_



not modelled 58.0 13 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
34d1qj8a_



not modelled 55.0 17 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
35c2f1tB_



not modelled 52.4 12 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
36c2lhfA_



not modelled 51.5 9 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
37c3nb3C_



not modelled 42.6 18 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
38c3kvnA_



not modelled 42.1 11 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
39d1osma_



not modelled 36.3 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
40d2fgqx1



not modelled 31.5 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
41d3cdda2



not modelled 29.6 11 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
42d1phoa_



not modelled 25.6 12 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
43d3d37a1



not modelled 25.0 12 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
44d2a1ja1



not modelled 18.8 40 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
45c2y0hA_



not modelled 12.9 12 PDB header:transport protein
Chain: A: PDB Molecule:probable porin;
PDBTitle: crystal structure of pseudomonas aeruginosa opdl
46c2qtkB_



not modelled 12.3 12 PDB header:membrane protein
Chain: B: PDB Molecule:probable porin;
PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa
47c3t7yB_



not modelled 11.5 15 PDB header:protein transport
Chain: B: PDB Molecule:yop proteins translocation protein u;
PDBTitle: structure of an autocleavage-inactive mutant of the cytoplasmic domain2 of ct091, the yscu homologue of chlamydia trachomatis
48c3jtyB_



not modelled 11.4 13 PDB header:transport protein
Chain: B: PDB Molecule:benf-like porin;
PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5
49d2zfga1



not modelled 9.8 18 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
50d1gm5a2



not modelled 9.1 30 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecG "wedge" domain
51c3cddD_



not modelled 9.0 12 PDB header:structural protein
Chain: D: PDB Molecule:prophage muso2, 43 kda tail protein;
PDBTitle: crystal structure of prophage muso2, 43 kda tail protein from2 shewanella oneidensis
52d1viga_



not modelled 8.5 17 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
53c3c00B_



not modelled 8.5 15 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:escu;
PDBTitle: crystal structural of the mutated g247t escu/spas c-terminal domain
54c1wruA_



not modelled 8.5 16 PDB header:structural protein
Chain: A: PDB Molecule:43 kda tail protein;
PDBTitle: structure of central hub elucidated by x-ray analysis of gene product2 44; baseplate component of bacteriophage mu
55d3bzra1



not modelled 8.5 21 Fold:EscU C-terminal domain-like
Superfamily:EscU C-terminal domain-like
Family:EscU C-terminal domain-like
56c3bzrA_



not modelled 8.5 21 PDB header:membrane protein, protein transport
Chain: A: PDB Molecule:escu;
PDBTitle: crystal structure of escu c-terminal domain with n262d mutation, space2 group p 41 21 2
57c3adyA_



not modelled 8.3 20 PDB header:proton transport
Chain: A: PDB Molecule:dotd;
PDBTitle: crystal structure of dotd from legionella
58c3sljA_



not modelled 8.0 13 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
59c2vt1B_



not modelled 7.9 19 PDB header:membrane protein
Chain: B: PDB Molecule:surface presentation of antigens protein spas;
PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system
60d1pyya2



not modelled 7.3 12 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
61c3cinA_



not modelled 7.1 20 PDB header:isomerase
Chain: A: PDB Molecule:myo-inositol-1-phosphate synthase-related protein;
PDBTitle: crystal structure of a myo-inositol-1-phosphate synthase-related2 protein (tm_1419) from thermotoga maritima msb8 at 1.70 a resolution
62c1pmdA_



not modelled 6.9 12 PDB header:peptidoglycan synthesis
Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme;
PDBTitle: penicillin-binding protein 2x (pbp-2x)
63d1i78a_



not modelled 6.6 8 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane protease OMPT
64d1wrua2



not modelled 6.5 12 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
65c3c01H_



not modelled 6.4 20 PDB header:membrane protein, protein transport
Chain: H: PDB Molecule:surface presentation of antigens protein spas;
PDBTitle: crystal structural of native spas c-terminal domain
66c1n0wB_



not modelled 6.4 63 PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: crystal structure of a rad51-brca2 brc repeat complex
67d1rp5a2



not modelled 6.3 9 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
68c3ov5A_



not modelled 6.3 24 PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: atomic structure of the xanthomonas citri virb7 globular domain.
69d2ctma1



not modelled 6.2 16 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
70d2aq0a1



not modelled 6.1 31 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
71c3nsgA_



not modelled 6.0 16 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
72c3a2rX_



not modelled 6.0 10 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
73c2qomB_



not modelled 5.9 11 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
74c1zq1B_



not modelled 5.9 15 PDB header:lyase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
75c2y0lA_



not modelled 5.9 11 PDB header:transport protein
Chain: A: PDB Molecule:cis-aconitate porin opdh;
PDBTitle: crystal structure of pseudomonas aeruginosa opdo
76d1okja1



not modelled 5.7 32 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
77d2b59b2



not modelled 5.7 19 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Pre-dockerin domain
78d1k25a2



not modelled 5.6 9 Fold:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Superfamily:Penicillin-binding protein 2x (pbp-2x), c-terminal domain
Family:Penicillin-binding protein 2x (pbp-2x), c-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0