Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	A	S	Q	F	S	A	Q	V	L	D	W	Y	D	K	Y	G	R	K	T	L	P	W	Q	I	D	K	T	P	Y	K	V	W	L	S	E	V	M	L	Q	Q	T	Q	V	A	T	V	I	P	Y	F	E	R	F	M	A	R	F	P
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	V	T	D	L	A	N	A	P	L	D	E	V	L	H	L	W	T	G	L	G	Y	Y	A	R	A	R	N	L	H	K	A	A	Q	Q	V	A	T	L	H	G	G	K	F	P	E	T	F	E	E	V	A	A	L	P	G	V	G	R	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	A	G	A	I	L	S	L	S	L	G	K	H	F	P	I	L	D	G	N	V	K	R	V	L	A	R	C	Y	A	V	S	G	W	P	G	K	K	E	V	E	N	K	L	W	S	L	S	E	Q	V	T	P	A	V	G	V	E	R	F
Secondary structure
SS confidence
Disorder																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	Q	A	M	M	D	L	G	A	M	I	C	T	R	S	K	P	K	C	S	L	C	P	L	Q	N	G	C	I	A	A	A	N	N	S	W	A	L	Y	P	G	K	K	P	K	Q	T	L	P	E	R	T	G	Y	F	L	L	L	Q	H
Secondary structure
SS confidence
Disorder																																					?	?	?			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		E	D	E	V	L	L	A	Q	R	P	P	S	G	L	W	G	G	L	Y	C	F	P	Q	F	A	D	E	E	S	L	R	Q	W	L	A	Q	R	Q	I	A	A	D	N	L	T	Q	L	T	A	F	R	H	T	F	S	H	F	H	L	D
Secondary structure
SS confidence
Disorder															?	?										?	?			?	?							?	?		?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence		I	V	P	M	W	L	P	V	S	S	F	T	G	C	M	D	E	G	N	A	L	W	Y	N	L	A	Q	P	P	S	V	G	L	A	A	P	V	E	R	L	L	Q	Q	L	R	T	G	A	P	V
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?	?																													?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1rrq chain A Region: 3 - 346 Aligned: 338 Modelled: 343 Confidence: 100.0% Identity: 36% PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair Phyre2 PDB 1kg2 chain A Region: 1 - 224 Aligned: 224 Modelled: 224 Confidence: 100.0% Identity: 100% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 3n5n chain X Region: 2 - 230 Aligned: 228 Modelled: 229 Confidence: 100.0% Identity: 45% PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue Phyre2 PDB 1rrq chain A domain 1 Region: 3 - 222 Aligned: 219 Modelled: 220 Confidence: 100.0% Identity: 47% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 1kea chain A Region: 3 - 213 Aligned: 209 Modelled: 211 Confidence: 100.0% Identity: 28% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 1orn chain A Region: 2 - 214 Aligned: 205 Modelled: 213 Confidence: 100.0% Identity: 23% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Endonuclease III Phyre2 PDB 2abk chain A Region: 1 - 216 Aligned: 210 Modelled: 216 Confidence: 100.0% Identity: 20% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Endonuclease III Phyre2 PDB 1pu6 chain A Region: 1 - 195 Aligned: 191 Modelled: 195 Confidence: 100.0% Identity: 15% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: 3-Methyladenine DNA glycosylase III (MagIII) Phyre2 PDB 1ngn chain A Region: 27 - 149 Aligned: 116 Modelled: 123 Confidence: 100.0% Identity: 20% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: Mismatch glycosylase Phyre2 PDB 3knt chain C Region: 8 - 194 Aligned: 166 Modelled: 173 Confidence: 100.0% Identity: 16% PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine Phyre2 PDB 3n0u chain B Region: 29 - 194 Aligned: 146 Modelled: 152 Confidence: 100.0% Identity: 16% PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima Phyre2 PDB 3fhg chain A Region: 2 - 187 Aligned: 178 Modelled: 186 Confidence: 99.9% Identity: 14% PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) Phyre2 PDB 3f10 chain A Region: 29 - 190 Aligned: 152 Modelled: 162 Confidence: 99.9% Identity: 20% PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine Phyre2 PDB 3s6i chain A Region: 20 - 182 Aligned: 155 Modelled: 163 Confidence: 99.9% Identity: 19% PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. Phyre2 PDB 2noh chain A domain 1 Region: 29 - 187 Aligned: 156 Modelled: 159 Confidence: 99.9% Identity: 26% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: DNA repair glycosylase, 2 C-terminal domains Phyre2 PDB 1yqm chain A Region: 29 - 184 Aligned: 152 Modelled: 155 Confidence: 99.9% Identity: 24% PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna Phyre2 PDB 1ko9 chain A Region: 29 - 184 Aligned: 152 Modelled: 155 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 Phyre2 PDB 2yg8 chain B Region: 8 - 198 Aligned: 174 Modelled: 172 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans Phyre2 PDB 1mpg chain A domain 1 Region: 26 - 182 Aligned: 142 Modelled: 157 Confidence: 99.9% Identity: 20% Fold: DNA-glycosylase Superfamily: DNA-glycosylase Family: DNA repair glycosylase, 2 C-terminal domains Phyre2 PDB 1x51 chain A domain 1 Region: 220 - 346 Aligned: 127 Modelled: 127 Confidence: 99.9% Identity: 27% Fold: Nudix Superfamily: Nudix Family: MutY C-terminal domain-like Phyre2 1 c1rrqA_ 2 d1kg2a_ 3 c3n5nX_ 4 d1rrqa1 5 d1keaa_ 6 d1orna_ 7 d2abka_ 8 d1pu6a_ 9 d1ngna_ 10 c3kntC_ 11 c3n0uB_ 12 c3fhgA_ 13 c3f10A_ 14 c3s6iA_ 15 d2noha1 16 c1yqmA_ 17 c1ko9A_ 18 c2yg8B_ 19 d1mpga1 20 d1x51a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1rrqA_ 100.0 36 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 2 d1kg2a_ 100.0 100 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 3 c3n5nX_ 100.0 45 PDB header:hydrolase Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase; PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue 4 d1rrqa1 100.0 47 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 5 d1keaa_ 100.0 28 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 6 d1orna_ 100.0 23 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 7 d2abka_ 100.0 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 8 d1pu6a_ 100.0 15 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase III (MagIII) 9 d1ngna_ 100.0 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Mismatch glycosylase 10 c3kntC_ 100.0 16 PDB header:hydrolase, lyase/dna Chain: C: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of methanocaldococcus jannaschii 8-2 oxoguanine glycosylase/lyase in complex with 15mer dna3 containing 8-oxoguanine 11 c3n0uB_ 100.0 16 PDB header:hydrolase, lyase Chain: B: PDB Molecule:probable n-glycosylase/dna lyase; PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima 12 c3fhgA_ 99.9 14 PDB header:dna repair, hydrolase, lyase Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg) 13 c3f10A_ 99.9 20 PDB header:hydrolase, lyase Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase; PDBTitle: crystal structure of clostridium acetobutylicum 8-2 oxoguanine dna glycosylase in complex with 8-oxoguanosine 14 c3s6iA_ 99.9 19 PDB header:hydrolase/dna Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1; PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna. 15 d2noha1 99.9 26 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 16 c1yqmA_ 99.9 24 PDB header:hydrolase/dna Chain: A: PDB Molecule:n-glycosylase/dna lyase; PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna 17 c1ko9A_ 99.9 24 PDB header:hydrolase Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1 18 c2yg8B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative; PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (2 alka) from deinococcus radiodurans 19 d1mpga1 99.9 20 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:DNA repair glycosylase, 2 C-terminal domains 20 d1x51a1 99.9 27 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 21 d1rrqa2 not modelled 99.9 15 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 22 c2jhnB_ not modelled 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna-glycosylase; PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus 23 c2h56C_ not modelled 99.8 13 PDB header:hydrolase Chain: C: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution 24 c1mpgB_ not modelled 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii; PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli 25 d1puna_ not modelled 99.8 11 Fold:Nudix Superfamily:Nudix Family:MutT-like 26 c3ef5A_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 27 c3gwyA_ not modelled 99.7 13 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 28 c3hhjA_ not modelled 99.7 21 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 29 c3grnB_ not modelled 99.7 14 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 30 c3r03B_ not modelled 99.6 20 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 31 c3cngC_ not modelled 99.6 14 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 32 c3fk9B_ not modelled 99.6 18 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 33 c2pq1B_ not modelled 99.6 11 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 34 c2gb5B_ not modelled 99.6 18 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 35 c3exqA_ not modelled 99.6 13 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 36 c3n77B_ not modelled 99.5 14 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 37 d2b06a1 not modelled 99.5 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 38 d1irya_ not modelled 99.5 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 39 d1vcda1 not modelled 99.5 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 40 c3q4iA_ not modelled 99.5 12 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 41 c2qjoB_ not modelled 99.5 17 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 42 c3dkuB_ not modelled 99.5 12 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 43 c3rh7A_ not modelled 99.5 8 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 44 d2b0va1 not modelled 99.5 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 45 d1k2ea_ not modelled 99.5 13 Fold:Nudix Superfamily:Nudix Family:MutT-like 46 d1vk6a2 not modelled 99.5 19 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 47 c2kdvA_ not modelled 99.5 12 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 48 c3o8sA_ not modelled 99.5 14 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 49 d2azwa1 not modelled 99.4 11 Fold:Nudix Superfamily:Nudix Family:MutT-like 50 c2pqvA_ not modelled 99.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 51 c3fcmA_ not modelled 99.4 14 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 52 d1ryaa_ not modelled 99.4 18 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 53 d2fkba1 not modelled 99.4 13 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 54 c2o1cB_ not modelled 99.4 14 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 55 c3id9B_ not modelled 99.4 14 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 56 c3gz8C_ not modelled 99.4 20 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 57 c3h95A_ not modelled 99.4 15 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 58 c3sonB_ not modelled 99.4 13 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 59 c3gg6A_ not modelled 99.4 20 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 60 c3f6aA_ not modelled 99.4 13 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 61 d2fb1a2 not modelled 99.4 16 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 62 c2jvbA_ not modelled 99.4 10 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 63 c3fjyB_ not modelled 99.4 13 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 64 d1ktga_ not modelled 99.3 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 65 c3f13A_ not modelled 99.3 10 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 66 d1sjya_ not modelled 99.3 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 67 c2r5wA_ not modelled 99.3 17 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 68 c2yyhC_ not modelled 99.3 12 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 69 c3i9xA_ not modelled 99.3 14 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 70 d1xsba_ not modelled 99.3 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 71 c3gz6A_ not modelled 99.3 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 72 d2a6ta2 not modelled 99.2 12 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 73 c2fb1A_ not modelled 99.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 74 d1jkna_ not modelled 99.2 11 Fold:Nudix Superfamily:Nudix Family:MutT-like 75 d2fvva1 not modelled 99.2 13 Fold:Nudix Superfamily:Nudix Family:MutT-like 76 c2fvvA_ not modelled 99.2 13 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 77 d2o5fa1 not modelled 99.2 12 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 78 d1ppva_ not modelled 99.2 12 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 79 c3edsA_ not modelled 99.2 11 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 80 d1nqza_ not modelled 99.2 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 81 d1hzta_ not modelled 99.2 12 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 82 c2qkmF_ not modelled 99.1 12 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 83 d2fmla2 not modelled 99.1 17 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 84 c2w4eA_ not modelled 99.1 16 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 85 d1g0sa_ not modelled 99.1 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 86 d1vhza_ not modelled 99.0 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 87 c3e57A_ not modelled 99.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 88 d1v8ya_ not modelled 99.0 12 Fold:Nudix Superfamily:Nudix Family:MutT-like 89 c2yvoA_ not modelled 98.9 15 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 90 d1q33a_ not modelled 98.9 11 Fold:Nudix Superfamily:Nudix Family:MutT-like 91 c2i6kA_ not modelled 98.9 17 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 92 c3bm4B_ not modelled 98.9 15 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 93 c2fmlB_ not modelled 98.9 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 94 d1mqea_ not modelled 98.8 9 Fold:Nudix Superfamily:Nudix Family:MutT-like 95 c2pnyA_ not modelled 98.7 16 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 96 c3q91D_ not modelled 98.7 14 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 97 d1viua_ not modelled 98.7 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 98 c2j8qB_ not modelled 98.5 10 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 99 c3dupB_ not modelled 98.4 8 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 100 c3qsjA_ not modelled 98.2 22 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 101 d1u20a1 not modelled 98.1 12 Fold:Nudix Superfamily:Nudix Family:MutT-like 102 c3couA_ not modelled 97.4 17 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 103 c3kvhA_ not modelled 95.3 16 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 104 c2h5xA_ not modelled 94.9 22 PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva; PDBTitle: ruva from mycobacterium tuberculosis 105 d1jmsa1 not modelled 94.8 9 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 106 d2bcqa1 not modelled 94.6 20 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 107 d1dgsa1 not modelled 94.5 31 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 108 d1ixra1 not modelled 94.4 33 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 109 d1nzpa_ not modelled 94.3 20 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 110 c1ixrA_ not modelled 94.3 33 PDB header:hydrolase Chain: A: PDB Molecule:holliday junction dna helicase ruva; PDBTitle: ruva-ruvb complex 111 d1cuka2 not modelled 94.2 27 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 112 d2bgwa1 not modelled 93.5 18 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 113 d2fmpa1 not modelled 93.5 25 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 114 d1szpa1 not modelled 93.4 23 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 115 d1bvsa2 not modelled 93.2 31 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:DNA helicase RuvA subunit, middle domain 116 c1d8lA_ not modelled 92.8 27 PDB header:gene regulation Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva); PDBTitle: e. coli holliday junction binding protein ruva nh2 region2 lacking domain iii 117 d1x2ia1 not modelled 92.6 20 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 118 d1dk2a_ not modelled 91.9 26 Fold:SAM domain-like Superfamily:DNA polymerase beta, N-terminal domain-like Family:DNA polymerase beta, N-terminal domain-like 119 c1kftA_ not modelled 91.9 28 PDB header:dna binding protein Chain: A: PDB Molecule:excinuclease abc subunit c; PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli 120 d1kfta_ not modelled 91.9 28 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Excinuclease UvrC C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0