PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3gz6A_

Fold library id	PDB Header	Molecule	Title
c3gz6A_	PDB header: dna binding protein/dna	Chain: A: PDB Molecule: mutt/nudix family protein;	PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna

Links to external resources
Added to library: Sat Aug 28 22:44:41 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q L L T V D A V L F T Y H D Q Q L K V L L V Q R S N H P F L G L W G L P G G F I D E T C D E S L E Q T V L R K L A E K T A V V P P Y I E Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S S S T T
S
T T T
S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C T V G N N S R D A R G W S V T V C Y T A L M S Y Q A C Q I Q I A S V S D V K W W P L A D V L Q M P L A F D H L Q L I E Q A R E R L T Q K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T S
S S
S S T T S
B S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L Y S L V P G F A L S E P F T L P E L Q H V H E V L L G K P I Q G K S F R R R V E Q A D L L I D T G L K R T E R G R P A N L Y C L K P D T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G G S
S S B
T T S
T
S S S S
G G G G

. . . . . . . . .

Sequence S Y R F L R N L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	L	L	T	V	D	A	V	L	F	T	Y	H	D	Q	Q	L	K	V	L	L	V	Q	R	S	N	H	P	F	L	G	L	W	G	L	P	G	G	F	I	D	E	T	C	D	E	S	L	E	Q	T	V	L	R	K	L	A	E	K	T	A	V	V	P	P	Y	I	E	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S	S										S	S	S	S	T	T					S						T	T	T			S														S	S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	T	V	G	N	N	S	R	D	A	R	G	W	S	V	T	V	C	Y	T	A	L	M	S	Y	Q	A	C	Q	I	Q	I	A	S	V	S	D	V	K	W	W	P	L	A	D	V	L	Q	M	P	L	A	F	D	H	L	Q	L	I	E	Q	A	R	E	R	L	T	Q	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S		T	T	S													S									S		S	S										T	T	S		B	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	Y	S	L	V	P	G	F	A	L	S	E	P	F	T	L	P	E	L	Q	H	V	H	E	V	L	L	G	K	P	I	Q	G	K	S	F	R	R	R	V	E	Q	A	D	L	L	I	D	T	G	L	K	R	T	E	R	G	R	P	A	N	L	Y	C	L	K	P	D	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	G	G	S		S	S	B													T	T	S															T											S	S	S	S									G	G	G	G
	.	.	.	.	.	.	.	.	.
Sequence	S	Y	R	F	L	R	N	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T				S	S