Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP52594
DateThu Apr 26 09:46:29 BST 2012
Unique Job IDb0988e9b722e394d

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2d9lA_
Top template information
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
Confidence and coverage
Confidence:100.0% Coverage: 23%
128 residues ( 23% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 79% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAASAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLN
Secondary structure 
SS confidence 
Disorder  ?????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  PPHRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEK
Secondary structure 
SS confidence 
Disorder 
????
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  YEKKRWYVPPEQAKVVASVHASISGSSASSTSSTPEVKPLKSLLGDSAPTLHLNKGTPSQ
Secondary structure 
SS confidence 
Disorder 
?????????????????????????????????????????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  SPVVGRSQGQQQEKKQFDLLSDLGSDIFAAPAPQSTATANFANFAHFNSHAAQNSANADF
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ANFDAFGQSSGSSNFGGFPTASHSPFQPQTTGGSAASVNANFAHFDNFPKSSSADFGTFN
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  TSQSHQTASAVSKVSTNKAGLQTADKYAALANLDNIFSAGQGGDQGSGFGTTGKAPVGSV
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  VSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQPAS
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAATFGTASMSMPTGFGTPAPY
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  SLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGVSSN
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........550.........560..
Sequence  PFMTGAPTGQFPTGSSSTNPFL
Secondary structure 
SS confidence 
Disorder  ??????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2d9l chain A

3D model

Region: 12 - 139
Aligned: 128
Modelled: 128
Confidence: 100.0%
Identity: 95%
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip

Phyre2

PDB 3lvr chain E

3D model

Region: 11 - 133
Aligned: 123
Modelled: 123
Confidence: 100.0%
Identity: 19%
PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium

Phyre2

PDB 2iqj chain B

3D model

Region: 11 - 135
Aligned: 122
Modelled: 125
Confidence: 100.0%
Identity: 25%
PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like

Phyre2

PDB 3feh chain A

3D model

Region: 8 - 134
Aligned: 126
Modelled: 127
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1

Phyre2

PDB 1dcq chain A domain 2

3D model

Region: 13 - 130
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 21%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: Pyk2-associated protein beta ARF-GAP domain

Phyre2

PDB 3jue chain A

3D model

Region: 16 - 133
Aligned: 118
Modelled: 118
Confidence: 100.0%
Identity: 20%
PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1

Phyre2

PDB 1dcq chain A

3D model

Region: 13 - 133
Aligned: 121
Modelled: 121
Confidence: 100.0%
Identity: 19%
PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.

Phyre2

PDB 2b0o chain F

3D model

Region: 14 - 132
Aligned: 119
Modelled: 119
Confidence: 100.0%
Identity: 19%
PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain

Phyre2

PDB 2owa chain B

3D model

Region: 10 - 124
Aligned: 111
Modelled: 115
Confidence: 100.0%
Identity: 21%
PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)

Phyre2

PDB 2p57 chain A

3D model

Region: 11 - 124
Aligned: 112
Modelled: 114
Confidence: 100.0%
Identity: 20%
PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein

Phyre2

PDB 3o47 chain A

3D model

Region: 12 - 138
Aligned: 127
Modelled: 127
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein

Phyre2

PDB 3dwd chain B

3D model

Region: 11 - 124
Aligned: 110
Modelled: 114
Confidence: 100.0%
Identity: 23%
PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1

Phyre2

PDB 1u5k chain A domain 2

3D model

Region: 14 - 123
Aligned: 87
Modelled: 95
Confidence: 96.4%
Identity: 18%
Fold: ArfGap/RecO-like zinc finger
Superfamily: ArfGap/RecO-like zinc finger
Family: RecO C-terminal domain-like

Phyre2

PDB 1u5k chain A

3D model

Region: 14 - 123
Aligned: 87
Modelled: 95
Confidence: 95.9%
Identity: 16%
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco

Phyre2

PDB 3bji chain A

3D model

Region: 27 - 60
Aligned: 34
Modelled: 34
Confidence: 92.3%
Identity: 18%
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1

Phyre2

PDB 1y1y chain S

3D model

Region: 1 - 52
Aligned: 52
Modelled: 52
Confidence: 73.8%
Identity: 17%
PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex

Phyre2

PDB 1y0j chain A domain 1

3D model

Region: 25 - 62
Aligned: 38
Modelled: 38
Confidence: 67.5%
Identity: 18%
Fold: Glucocorticoid receptor-like (DNA-binding domain)
Superfamily: Glucocorticoid receptor-like (DNA-binding domain)
Family: Erythroid transcription factor GATA-1

Phyre2

PDB 1d4u chain A

3D model

Region: 28 - 52
Aligned: 25
Modelled: 25
Confidence: 66.8%
Identity: 20%
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies

Phyre2

PDB 3a1b chain A

3D model

Region: 2 - 52
Aligned: 51
Modelled: 51
Confidence: 60.5%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a, histone h3.1;
PDBTitle: crystal structure of the dnmt3a add domain in complex with histone h3

Phyre2

PDB 2je6 chain B domain 2

3D model

Region: 72 - 122
Aligned: 34
Modelled: 34
Confidence: 57.4%
Identity: 21%
Fold: Ribonuclease PH domain 2-like
Superfamily: Ribonuclease PH domain 2-like
Family: Ribonuclease PH domain 2-like

Phyre2
1
c2d9lA_
2
c3lvrE_
3
c2iqjB_
4
c3fehA_
5
d1dcqa2
6
c3jueA_
7
c1dcqA_
8
c2b0oF_
9
c2owaB_
10
c2p57A_
11
c3o47A_
12
c3dwdB_
13
d1u5ka2
14
c1u5kA_
15
c3bjiA_
16
c1y1yS_
17
d1y0ja1
18
c1d4uA_
19
c3a1bA_
20
d2je6b2
21
22
23
24
25
26
27
28
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2d9lA_
100.0 95 PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
2c3lvrE_
100.0 19 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
3c2iqjB_
100.0 25 PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744)2 stromal membrane-associated protein 1-like
4c3fehA_
100.0 24 PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1
5d1dcqa2
100.0 21 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:Pyk2-associated protein beta ARF-GAP domain
6c3jueA_
100.0 20 PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
7c1dcqA_
100.0 19 PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.
8c2b0oF_
100.0 19 PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain
9c2owaB_
100.0 21 PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
10c2p57A_
100.0 20 PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
11c3o47A_
100.0 23 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
12c3dwdB_
100.0 23 PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1
13d1u5ka2
96.4 18 Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:RecO C-terminal domain-like
14c1u5kA_
95.9 16 PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
15c3bjiA_
92.3 18 PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
16c1y1yS_
73.8 17 PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex
17d1y0ja1
67.5 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
18c1d4uA_
66.8 20 PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
19c3a1bA_
60.5 14 PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a, histone h3.1;
PDBTitle: crystal structure of the dnmt3a add domain in complex with histone h3
20d2je6b2
57.4 21 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
21c3ihpB_
not modelled 57.1 30 PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: covalent ubiquitin-usp5 complex
22c2zetD_
not modelled 54.1 29 PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
23d2ba0d2
not modelled 53.8 15 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
24c1pqvS_
not modelled 53.5 17 PDB header:transferase/transcription
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis complex
25d2crga1
not modelled 53.0 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
26d2br2b2
not modelled 51.9 18 Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
27d1vqoz1
not modelled 51.8 15 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
28d1jj2y_
not modelled 51.7 23 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
29c1yshD_
not modelled 50.7 21 PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
30d1gnfa_
not modelled 50.6 18 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
31c2zkrz_
not modelled 50.2 23 PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
32c2qa4Z_
not modelled 50.1 15 PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
33d1pjua1
not modelled 48.9 44 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
34c4a17Y_
not modelled 48.4 18 PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
35d5gata_
not modelled 48.0 22 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
36d2idaa1
not modelled 47.8 31 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
37c3f4yF_
not modelled 47.5 36 PDB header:viral protein
Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain;
PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence
38d1ffkw_
not modelled 46.4 26 Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
39d2vuti1
not modelled 46.3 23 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
40c3auoB_
not modelled 45.1 9 PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
41d1zbdb_
not modelled 44.8 18 Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain
42c2hr5B_
not modelled 44.5 13 PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
43c3h00A_
not modelled 44.4 25 PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp412 fusion intermediate
44c2kgoA_
not modelled 44.0 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ybii;
PDBTitle: solution nmr structure of zn finger protein ybil from escherichia2 coli. nesg target et107, ocsp target ec0402
45c2i50A_
not modelled 43.8 18 PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 16;
PDBTitle: solution structure of ubp-m znf-ubp domain
46c2d8uA_
not modelled 43.8 15 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin ligase trim63;
PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein
47c3cc4Z_
not modelled 42.3 15 PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
48d3gata_
not modelled 42.2 16 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
49c3c65A_
not modelled 41.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain
50d2nllb_
not modelled 40.2 24 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
51d1v6za2
not modelled 39.9 9 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
52d1hcqa_
not modelled 39.8 22 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
53c4a5bA_
not modelled 38.8 12 PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside-triphosphatase 2;
PDBTitle: crystal structure of the c258s/c268s variant of toxoplasma gondii2 nucleoside triphosphate diphosphohydrolase 1 (ntpdase1)
54c2yusA_
not modelled 38.6 13 PDB header:transcription
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-
PDBTitle: solution structure of the sant domain of human swi/snf-2 related matrix-associated actin-dependent regulator of3 chromatin subfamily c member 1
55c2kdxA_
not modelled 38.0 21 PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
56c2junA_
not modelled 37.9 20 PDB header:ligase
Chain: A: PDB Molecule:midline-1;
PDBTitle: structure of the mid1 tandem b-boxes reveals an interaction2 reminiscent of intermolecular ring heterodimers
57d2a2pa1
not modelled 37.3 29 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Selenoprotein W-related
58c1kxuA_
not modelled 37.2 16 PDB header:regulatory protein
Chain: A: PDB Molecule:cyclin h;
PDBTitle: cyclin h, a positive regulatory subunit of cdk activating kinase
59d1cjya2
not modelled 37.1 19 Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:Lysophospholipase
60d2g45a1
not modelled 36.6 35 Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
61c3k7aM_
not modelled 36.1 32 PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
62c1dvbA_
not modelled 35.9 29 PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
63d2dq5a1
not modelled 35.5 23 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
64d2cora1
not modelled 34.8 17 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
65c1oahA_
not modelled 34.3 17 PDB header:reductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from desulfovibrio2 desulfuricans atcc 27774: the relevance of the two3 calcium sites in the structure of the catalytic subunit4 (nrfa).
66d1oaha_
not modelled 34.3 17 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
67c2vr0A_
not modelled 34.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase, catalytic subunit nfra;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex bound to the hqno inhibitor
68d1dl6a_
not modelled 33.8 13 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
69c2egmA_
not modelled 33.5 17 PDB header:transcription/metal binding protein
Chain: A: PDB Molecule:tripartite motif-containing protein 41;
PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41
70c1yuzB_
not modelled 32.6 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
71c2cszA_
not modelled 32.6 33 PDB header:signaling protein
Chain: A: PDB Molecule:synaptotagmin-like protein 4;
PDBTitle: solution structure of the ring domain of the synaptotagmin-2 like protein 4
72c2p3xA_
not modelled 32.6 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyphenol oxidase, chloroplast;
PDBTitle: crystal structure of grenache (vitis vinifera) polyphenol2 oxidase
73d1glua_
not modelled 32.3 22 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
74c3agrB_
not modelled 32.2 13 PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside triphosphate hydrolase;
PDBTitle: crystal structure of nucleoside triphosphate hydrolases from neospora2 caninum
75d2djaa1
not modelled 32.1 20 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
76c1qh2B_
not modelled 32.0 41 PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:protein (trypsin inhibitor c2);
PDBTitle: chymotrypsin inhibitor (c2) from nicotiana alata
77c3ky9B_
not modelled 31.8 13 PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
78c3jyw9_
not modelled 31.8 13 PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
79d1p6oa_
not modelled 31.7 24 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
80d1unld_
not modelled 31.3 31 Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
81d2bkra1
not modelled 31.3 13 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Adenain-like
82c1tjlD_
not modelled 31.3 11 PDB header:transcription
Chain: D: PDB Molecule:dnak suppressor protein;
PDBTitle: crystal structure of transcription factor dksa from e. coli
83d1fyba1
not modelled 31.2 43 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
84c2w9mB_
not modelled 31.1 7 PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
85d1ce3a_
not modelled 30.7 42 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
86c1unhD_
not modelled 30.7 31 PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
87d1ynwa1
not modelled 30.7 27 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
88d1pfta_
not modelled 30.5 24 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
89c2gb5B_
not modelled 30.1 21 PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
90c3c5kA_
not modelled 29.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase 6;
PDBTitle: crystal structure of human hdac6 zinc finger domain
91c3pihA_
not modelled 29.6 15 PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein a;
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
92d2k2na1
not modelled 29.1 20 Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
93d1kb2a_
not modelled 27.9 29 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
94c3o5aB_
not modelled 27.9 29 PDB header:oxidoreductase
Chain: B: PDB Molecule:diheme cytochrome c napb;
PDBTitle: crystal structure of partially reduced periplasmic nitrate reductase2 from cupriavidus necator using ionic liquids
95d1rg6a_
not modelled 27.6 18 Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
96d1dszb_
not modelled 27.4 23 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
97d1ik7a_
not modelled 27.0 22 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
98c2kq9A_
not modelled 26.9 6 PDB header:transcription
Chain: A: PDB Molecule:dnak suppressor protein;
PDBTitle: solution structure of dnak suppressor protein from agrobacterium2 tumefaciens c58. northeast structural genomics consortium target3 att12/ontario center for structural proteomics target atc0888
99c1l4aE_
not modelled 26.9 21 PDB header:endocytosis/exocytosis
Chain: E: PDB Molecule:synaphin a;
PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
100d1tiha_
not modelled 26.6 43 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
101c2eqrA_
not modelled 26.3 22 PDB header:transcription
Chain: A: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1
102c2eblA_
not modelled 25.9 18 PDB header:transcription
Chain: A: PDB Molecule:coup transcription factor 1;
PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1
103c2j7aE_
not modelled 25.7 17 PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c nitrite reductase nrfa;
PDBTitle: crystal structure of cytochrome c nitrite reductase nrfha2 complex from desulfovibrio vulgaris
104c1x6iB_
not modelled 25.0 8 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ygfy;
PDBTitle: crystal structure of ygfy from escherichia coli
105d2d8ua1
not modelled 24.6 18 Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
106d1gff1_
not modelled 24.4 26 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
107d1oyvi_
not modelled 24.3 44 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
108d1b8ta2
not modelled 24.0 24 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
109d1lo1a_
not modelled 24.0 24 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
110c3f29A_
not modelled 23.8 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:eight-heme nitrite reductase;
PDBTitle: structure of the thioalkalivibrio nitratireducens2 cytochrome c nitrite reductase in complex with sulfite
111c3dzuD_
not modelled 23.8 27 PDB header:transcription/dna
Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma;
PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide
112d1kb6b_
not modelled 23.5 29 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
113c2pv0A_
not modelled 23.1 10 PDB header:transferase regulator
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3-like;
PDBTitle: dna methyltransferase 3 like protein (dnmt3l)
114c3izci_
not modelled 22.8 35 PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein rpl10 (l10e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
115c1fybA_
not modelled 21.9 43 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:proteinase inhibitor;
PDBTitle: solution structure of c1-t1, a two-domain proteinase2 inhibitor derived from the circular precursor protein na-3 propi from nicotiana alata
116d1r4ra_
not modelled 21.8 25 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
117d1m06f_
not modelled 21.7 21 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
118c2xssB_
not modelled 21.5 7 PDB header:hydrolase
Chain: B: PDB Molecule:cgmp-specific 3', 5'-cyclic phosphodiesterase;
PDBTitle: crystal structure of gafb from the human phosphodiesterase 5
119d1r4ia_
not modelled 21.1 21 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
120c1r4iA_
not modelled 21.1 21 PDB header:transcription/dna
Chain: A: PDB Molecule:androgen receptor;
PDBTitle: crystal structure of androgen receptor dna-binding domain2 bound to a direct repeat response element

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