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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3dzuD_

Fold library idPDB HeaderMoleculeTitle
c3dzuD_PDB header: transcription/dnaChain: D: PDB Molecule: peroxisome proliferator-activated receptor gamma;PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide


Added to library: Tue Mar 16 13:37:36 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSH
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Known secondary structure (DSSP)

B
SSS
SB

STT

TTT





SS




STT
SS
T

G
 .........80.........90.........100.........110.........120.........130.........140
Sequence NAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPF
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Known secondary structure (DSSP) GG


S

S
TTTSTTTTTTTTS
SSTTT
SS
S
S
S


 .........150.........160.........170.........180.........190.........200.........210
Sequence VIYDMNSLMMGEDKIKFEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYT
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Known secondary structure (DSSP)
SSS








TSTTTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence MLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP
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Known secondary structure (DSSP) TTSTTTTTTTTSSTTTT


S
TT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPL
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Known secondary structure (DSSP) S
S

S
SSSST
S




 .........
Sequence LQEIYKDLY
Predicted secondary structure
SS confidence








Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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