Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	S	W	L	I	P	A	A	P	V	T	V	V	E	E	I	K	K	S	R	F	I	T	M	L	A	H	T	D	G	V	E	A	A	K	A	F	V	E	S	V	R	A	E	H	P	D	A	R	H	H	C	V	A	W	V	A	G	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	D	D	S	Q	Q	L	G	F	S	D	D	G	E	P	A	G	T	A	G	K	P	M	L	A	Q	L	M	G	S	G	V	G	E	I	T	A	V	V	V	R	Y	Y	G	G	I	L	L	G	T	G	G	L	V	K	A	Y	G	G	G
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	N	Q	A	L	R	Q	L	T	T	Q	R	K	T	P	L	T	E	Y	T	L	Q	C	E	Y	H	Q	L	T	G	I	E	A	L	L	G	Q	C	D	G	K	I	I	N	S	D	Y	Q	A	F	V	L	L	R	V	A	L	P	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Sequence		K	V	A	E	F	S	A	K	L	A	D	F	S	R	G	S	L	Q	L	L	A	I	E	E
Secondary structure
SS confidence
Disorder																							?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vi7 chain A Region: 1 - 204 Aligned: 204 Modelled: 204 Confidence: 100.0% Identity: 100% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein Phyre2 PDB 2cve chain A Region: 5 - 200 Aligned: 189 Modelled: 196 Confidence: 100.0% Identity: 35% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 Phyre2 PDB 1vi7 chain A domain 1 Region: 1 - 134 Aligned: 134 Modelled: 134 Confidence: 100.0% Identity: 100% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: YigZ N-terminal domain-like Phyre2 PDB 2cve chain A domain 1 Region: 5 - 133 Aligned: 122 Modelled: 129 Confidence: 100.0% Identity: 45% Fold: Ribosomal protein S5 domain 2-like Superfamily: Ribosomal protein S5 domain 2-like Family: YigZ N-terminal domain-like Phyre2 PDB 1vi7 chain A domain 2 Region: 135 - 204 Aligned: 70 Modelled: 70 Confidence: 99.0% Identity: 100% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: YigZ C-terminal domain-like Phyre2 PDB 2xex chain A Region: 111 - 201 Aligned: 91 Modelled: 91 Confidence: 97.6% Identity: 10% PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g Phyre2 PDB 2bm0 chain A Region: 87 - 200 Aligned: 114 Modelled: 114 Confidence: 97.6% Identity: 14% PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a Phyre2 PDB 3b8h chain A Region: 87 - 199 Aligned: 113 Modelled: 113 Confidence: 97.6% Identity: 14% PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex Phyre2 PDB 2dy1 chain A Region: 111 - 200 Aligned: 90 Modelled: 90 Confidence: 97.5% Identity: 12% PDB header:signaling protein, translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of ef-g-2 from thermus thermophilus Phyre2 PDB 2rdo chain 7 Region: 87 - 200 Aligned: 114 Modelled: 114 Confidence: 97.5% Identity: 11% PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound Phyre2 PDB 1zn0 chain B Region: 87 - 200 Aligned: 114 Modelled: 114 Confidence: 97.0% Identity: 14% PDB header:translation/biosynthetic protein/rna Chain: B: PDB Molecule:elongation factor g; PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf Phyre2 PDB 2dy1 chain A domain 5 Region: 133 - 200 Aligned: 68 Modelled: 68 Confidence: 97.0% Identity: 15% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: EF-G/eEF-2 domains III and V Phyre2 PDB 1n0u chain A domain 5 Region: 134 - 200 Aligned: 67 Modelled: 67 Confidence: 96.9% Identity: 18% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: EF-G/eEF-2 domains III and V Phyre2 PDB 2bv3 chain A domain 5 Region: 133 - 200 Aligned: 68 Modelled: 68 Confidence: 96.9% Identity: 13% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: EF-G/eEF-2 domains III and V Phyre2 PDB 2ywf chain A Region: 133 - 200 Aligned: 68 Modelled: 68 Confidence: 96.7% Identity: 22% PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus Phyre2 PDB 2cve chain A domain 2 Region: 134 - 200 Aligned: 67 Modelled: 67 Confidence: 96.4% Identity: 19% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: YigZ C-terminal domain-like Phyre2 PDB 3cb4 chain D Region: 133 - 200 Aligned: 68 Modelled: 68 Confidence: 96.3% Identity: 26% PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa Phyre2 PDB 3deg chain C Region: 133 - 200 Aligned: 68 Modelled: 68 Confidence: 96.3% Identity: 26% PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp Phyre2 PDB 2kdo chain A Region: 138 - 203 Aligned: 66 Modelled: 66 Confidence: 95.6% Identity: 11% PDB header:rna binding protein Chain: A: PDB Molecule:ribosome maturation protein sbds; PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds Phyre2 PDB 1p9q chain C domain 3 Region: 135 - 203 Aligned: 68 Modelled: 69 Confidence: 95.5% Identity: 10% Fold: Ferredoxin-like Superfamily: EF-G C-terminal domain-like Family: Hypothetical protein AF0491, C-terminal domain Phyre2 1 c1vi7A_ 2 c2cveA_ 3 d1vi7a1 4 d2cvea1 5 d1vi7a2 6 c2xexA_ 7 c2bm0A_ 8 c3b8hA_ 9 c2dy1A_ 10 c2rdo7_ 11 c1zn0B_ 12 d2dy1a5 13 d1n0ua5 14 d2bv3a5 15 c2ywfA_ 16 d2cvea2 17 c3cb4D_ 18 c3degC_ 19 c2kdoA_ 20 d1p9qc3 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vi7A_ 100.0 100 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yigz; PDBTitle: crystal structure of an hypothetical protein 2 c2cveA_ 100.0 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1053; PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8 3 d1vi7a1 100.0 100 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 4 d2cvea1 100.0 45 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:YigZ N-terminal domain-like 5 d1vi7a2 99.0 100 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:YigZ C-terminal domain-like 6 c2xexA_ 97.6 10 PDB header:translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g 7 c2bm0A_ 97.6 14 PDB header:elongation factor Chain: A: PDB Molecule:elongation factor g; PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a 8 c3b8hA_ 97.6 14 PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex 9 c2dy1A_ 97.5 12 PDB header:signaling protein, translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of ef-g-2 from thermus thermophilus 10 c2rdo7_ 97.5 11 PDB header:ribosome Chain: 7: PDB Molecule:elongation factor g; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound 11 c1zn0B_ 97.0 14 PDB header:translation/biosynthetic protein/rna Chain: B: PDB Molecule:elongation factor g; PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf 12 d2dy1a5 97.0 15 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 13 d1n0ua5 96.9 18 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 14 d2bv3a5 96.9 13 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 15 c2ywfA_ 96.7 22 PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus 16 d2cvea2 96.4 19 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:YigZ C-terminal domain-like 17 c3cb4D_ 96.3 26 PDB header:translation Chain: D: PDB Molecule:gtp-binding protein lepa; PDBTitle: the crystal structure of lepa 18 c3degC_ 96.3 26 PDB header:ribosome Chain: C: PDB Molecule:gtp-binding protein lepa; PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp 19 c2kdoA_ 95.6 11 PDB header:rna binding protein Chain: A: PDB Molecule:ribosome maturation protein sbds; PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds 20 d1p9qc3 95.5 10 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 21 c1t95A_ not modelled 95.0 9 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein af0491; PDBTitle: crystal structure of the shwachman-bodian-diamond syndrome2 protein orthologue from archaeoglobus fulgidus 22 d1t95a3 not modelled 94.5 11 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 23 c2wbmA_ not modelled 93.5 18 PDB header:rna-binding protein Chain: A: PDB Molecule:ribosome maturation protein sdo1 homolog; PDBTitle: crystal structure of mthsbds, the homologue of the2 shwachman-bodian-diamond syndrome protein in the3 euriarchaeon methanothermobacter thermautotrophicus 24 c1jqsC_ not modelled 93.5 13 PDB header:ribosome Chain: C: PDB Molecule:elongation factor g; PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog 25 d1lrza2 not modelled 57.4 17 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 26 d1kona_ not modelled 52.9 5 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 27 d1mw7a_ not modelled 47.9 9 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 28 d1lfpa_ not modelled 35.2 9 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 29 c2p5xB_ not modelled 35.1 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein; PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein 30 d1tzfa_ not modelled 25.1 24 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 31 d1ex2a_ not modelled 22.6 19 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 32 d2cz4a1 not modelled 20.7 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 33 d2c71a1 not modelled 20.5 27 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 34 d1v4aa1 not modelled 19.3 50 Fold:Four-helical up-and-down bundle Superfamily:Nucleotidyltransferase substrate binding subunit/domain Family:Glutamine synthase adenylyltransferase GlnE, domain 2 35 c3polA_ not modelled 17.6 21 PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii. 36 c3okrA_ not modelled 16.5 29 PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 37 c3t18D_ not modelled 16.2 10 PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. 38 c3q3jA_ not modelled 15.3 22 PDB header:membrane protein/protein binding Chain: A: PDB Molecule:plexin-a2; PDBTitle: crystal structure of plexin a2 rbd in complex with rnd1 39 d2f1fa2 not modelled 15.3 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 40 c2qs0A_ not modelled 14.2 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 41 d1vh3a_ not modelled 14.0 14 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 42 d2amha1 not modelled 13.0 17 Fold:Anticodon-binding domain-like Superfamily:ITPase-like Family:Maf-like 43 c2vshB_ not modelled 12.1 21 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae 44 d2fgca1 not modelled 12.1 18 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 45 d1qwja_ not modelled 11.7 27 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 46 d1vh1a_ not modelled 11.1 29 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 47 c3e3xA_ not modelled 11.1 17 PDB header:hydrolase Chain: A: PDB Molecule:bipa; PDBTitle: the c-terminal part of bipa protein from vibrio parahaemolyticus rimd2 2210633 48 d1vgwa_ not modelled 10.9 27 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 49 c3lkwA_ not modelled 10.8 45 PDB header:viral protein,hydrolase Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active2 site mutant 50 c2kr6A_ not modelled 10.7 36 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 51 d1v3aa_ not modelled 10.7 20 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 52 d1rxda_ not modelled 9.9 18 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 53 d2ijob1 not modelled 9.9 45 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 54 c2np3A_ not modelled 9.8 43 PDB header:transcription Chain: A: PDB Molecule:putative tetr-family regulator; PDBTitle: crystal structure of tetr-family regulator (sco0857) from streptomyces2 coelicolor a3. 55 c2exeA_ not modelled 9.7 8 PDB header:transferase Chain: A: PDB Molecule:dual specificity protein kinase clk3; PDBTitle: crystal structure of the phosphorylated clk3 56 d2fomb1 not modelled 9.6 26 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 57 c3e90B_ not modelled 9.4 45 PDB header:hydrolase Chain: B: PDB Molecule:ns3 protease; PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h 58 d1t4lb_ not modelled 8.9 39 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 59 d1befa_ not modelled 8.8 36 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 60 d1ny1a_ not modelled 8.5 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 61 d1t4oa_ not modelled 8.3 38 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 62 c1t4oA_ not modelled 8.3 38 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease iii; PDBTitle: crystal structure of rnt1p dsrbd 63 d2fp7b1 not modelled 8.0 45 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 64 d1pnoa_ not modelled 7.9 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 65 c2gv1A_ not modelled 7.7 8 PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli 66 c2w3zA_ not modelled 7.6 21 PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase 67 c1up6F_ not modelled 7.6 26 PDB header:hydrolase Chain: F: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: structure of the 6-phospho-beta glucosidase from thermotoga2 maritima at 2.55 angstrom resolution in the tetragonal form3 with manganese, nad+ and glucose-6-phosphate 68 d1eyra_ not modelled 7.4 18 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 69 c1l2yA_ not modelled 7.4 56 PDB header:de novo protein Chain: A: PDB Molecule:tc5b; PDBTitle: nmr structure of trp-cage miniprotein construct tc5b 70 c3b4oB_ not modelled 7.4 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:phenazine biosynthesis protein a/b; PDBTitle: crystal structure of phenazine biosynthesis protein phza/b2 from burkholderia cepacia r18194, apo form 71 c2wv9A_ not modelled 7.3 41 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus 72 d1jo0a_ not modelled 7.2 14 Fold:IF3-like Superfamily:YhbY-like Family:YhbY-like 73 c2hfuB_ not modelled 7.2 17 PDB header:transferase Chain: B: PDB Molecule:mevalonate kinase, putative; PDBTitle: crystal structure of l. major mevalonate kinase in complex2 with r-mevalonate 74 d1d4oa_ not modelled 6.9 27 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 75 c2kduB_ not modelled 6.8 25 PDB header:metal binding protein/exocytosis Chain: B: PDB Molecule:protein unc-13 homolog a; PDBTitle: structural basis of the munc13-1/ca2+-calmodulin2 interaction: a novel 1-26 calmodulin binding motif with a3 bipartite binding mode 76 c3oamD_ not modelled 6.8 33 PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae 77 c2jphA_ not modelled 6.7 25 PDB header:signaling protein, protein binding Chain: A: PDB Molecule:plexin-b1; PDBTitle: nmr solution structure of the rho gtpase binding domain of2 human plexin-b1 78 c2jofA_ not modelled 6.6 56 PDB header:de novo protein Chain: A: PDB Molecule:trp-cage; PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein 79 d1tmka_ not modelled 6.4 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 80 d2pc6a1 not modelled 6.4 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 81 c1s6yA_ not modelled 6.4 30 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase 82 c1v4aA_ not modelled 6.3 50 PDB header:transferase Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase; PDBTitle: structure of the n-terminal domain of escherichia coli2 glutamine synthetase adenylyltransferase 83 d1vm6a2 not modelled 6.3 80 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 84 d1f61a_ not modelled 6.3 50 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 85 d1h7ea_ not modelled 6.2 23 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 86 c1uv7A_ not modelled 6.2 14 PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae 87 d1uv7a_ not modelled 6.2 14 Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM 88 c3k7dA_ not modelled 6.1 30 PDB header:transferase Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase; PDBTitle: c-terminal (adenylylation) domain of e.coli glutamine synthetase2 adenylyltransferase 89 c2vbcA_ not modelled 6.0 36 PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus 90 d1w55a1 not modelled 5.9 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase 91 c2ux8G_ not modelled 5.8 14 PDB header:transferase Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate. 92 c2xwlB_ not modelled 5.8 39 PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg 93 c2bruC_ not modelled 5.8 33 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 94 c3rz2B_ not modelled 5.7 16 PDB header:hydrolase Chain: B: PDB Molecule:protein tyrosine phosphatase type iva 1; PDBTitle: crystal of prl-1 complexed with peptide 95 d2ieca1 not modelled 5.7 57 Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like 96 c3pnnA_ not modelled 5.6 20 PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83 97 d2f06a1 not modelled 5.6 9 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 98 c3okrC_ not modelled 5.5 35 PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd) 99 d1diha2 not modelled 5.5 80 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0