PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2wbmA_

Fold library id	PDB Header	Molecule	Title
c2wbmA_	PDB header: rna-binding protein	Chain: A: PDB Molecule: ribosome maturation protein sdo1 homolog;	PDBTitle: crystal structure of mthsbds, the homologue of the2 shwachman-bodian-diamond syndrome protein in the3 euriarchaeon methanothermobacter thermautotrophicus

Links to external resources
Added to library: Sun Aug 29 00:42:15 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S H M V S L E D A V I A R L E S H G E R F E V L V D P D L A A E F R R E D S D V S V E D V L A V Q E V F R D A R K G D K A S E E A M R K V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
S T T
B S S S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E T A D P L E V T P V I L R R G T I Q L T A E Q R R Q M I E D K R L K I I N K I A R E A I N P Q N G L P H P P K R I E K A M E E A R V H V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P F K T V D E Q V N I V L K A I R T K I P I K F E K V R V A I K I P G E M A G S A Y G V I S N F G K I T N E E W Q N D G S W I A V V E I P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T T S
G G G
T T S
G

. . . . . . . . . 220 . . . . . . . . . 230 . . . .

Sequence G L Q D S F Y Q K L S E L T G G N V E T R L I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	H	M	V	S	L	E	D	A	V	I	A	R	L	E	S	H	G	E	R	F	E	V	L	V	D	P	D	L	A	A	E	F	R	R	E	D	S	D	V	S	V	E	D	V	L	A	V	Q	E	V	F	R	D	A	R	K	G	D	K	A	S	E	E	A	M	R	K	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T									T	T																	S	T	T									B	S	S	S						T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	T	A	D	P	L	E	V	T	P	V	I	L	R	R	G	T	I	Q	L	T	A	E	Q	R	R	Q	M	I	E	D	K	R	L	K	I	I	N	K	I	A	R	E	A	I	N	P	Q	N	G	L	P	H	P	P	K	R	I	E	K	A	M	E	E	A	R	V	H	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S															S																															T	T	T																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	F	K	T	V	D	E	Q	V	N	I	V	L	K	A	I	R	T	K	I	P	I	K	F	E	K	V	R	V	A	I	K	I	P	G	E	M	A	G	S	A	Y	G	V	I	S	N	F	G	K	I	T	N	E	E	W	Q	N	D	G	S	W	I	A	V	V	E	I	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S														T	T	T	S															G	G	G																					T	T	S										G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence	G	L	Q	D	S	F	Y	Q	K	L	S	E	L	T	G	G	N	V	E	T	R	L	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G												T	T	T