PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2kdoA_

Fold library id	PDB Header	Molecule	Title
c2kdoA_	PDB header: rna binding protein	Chain: A: PDB Molecule: ribosome maturation protein sbds;	PDBTitle: structure of the human shwachman-bodian-diamond syndrome protein, sbds

Links to external resources
Added to library: Sun Aug 29 01:21:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G H M S I F T P T N Q I R L T N V A V V R M K R A G K R F E I A C Y K N K V V G W R S G V E K D L D E V L Q T H S V F V N V S K G Q V A K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S S
T T S
S S
S S S G G G G G T T
S
S S T T
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E D L I S A F G T D D Q T E I C K Q I L T K G E V Q V S D K E R H T Q L E Q M F R D I A T I V A D K C V N P E T K R P Y T V I L I E R A M K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S
S S
S S S S S S S
T T T T
T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D I H Y S V K T N K S T K Q Q A L E V I K Q L K E K M K I E R A H M R L R F I L P V N E G K K L K E K L K P L I K V I E S E D Y G Q Q L E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S T T
S
B T T T T
S S B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . .

Sequence V C L I D P G C F R E I D E L I K K E T K G K G S L E V L N L K D V E E G D E K F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T T S
S S S
B S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	H	M	S	I	F	T	P	T	N	Q	I	R	L	T	N	V	A	V	V	R	M	K	R	A	G	K	R	F	E	I	A	C	Y	K	N	K	V	V	G	W	R	S	G	V	E	K	D	L	D	E	V	L	Q	T	H	S	V	F	V	N	V	S	K	G	Q	V	A	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S						S	S		T	T	S									S	S									S	S	S	G	G	G	G	G	T	T			S		S	S	T	T										T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	D	L	I	S	A	F	G	T	D	D	Q	T	E	I	C	K	Q	I	L	T	K	G	E	V	Q	V	S	D	K	E	R	H	T	Q	L	E	Q	M	F	R	D	I	A	T	I	V	A	D	K	C	V	N	P	E	T	K	R	P	Y	T	V	I	L	I	E	R	A	M	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	S		S												S	S						S	S	S	S	S	S	S		T	T											T	T					T	T	S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	I	H	Y	S	V	K	T	N	K	S	T	K	Q	Q	A	L	E	V	I	K	Q	L	K	E	K	M	K	I	E	R	A	H	M	R	L	R	F	I	L	P	V	N	E	G	K	K	L	K	E	K	L	K	P	L	I	K	V	I	E	S	E	D	Y	G	Q	Q	L	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		S	S	T	T																		S														B								T	T	T					T									S	S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Sequence	V	C	L	I	D	P	G	C	F	R	E	I	D	E	L	I	K	K	E	T	K	G	K	G	S	L	E	V	L	N	L	K	D	V	E	E	G	D	E	K	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						G	G	G												T	T	T	T	S								S	S	S				B	S