Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	R	L	L	I	V	N	A	D	D	F	G	L	S	K	G	Q	N	Y	G	I	I	E	A	C	R	N	G	I	V	T	S	T	T	A	L	V	N	G	Q	A	I	D	H	A	V	Q	L	S	R	D	E	P	S	L	A	I	G	M
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		H	F	V	L	T	M	G	K	P	L	T	A	M	P	G	L	T	R	D	G	V	L	G	K	W	I	W	Q	L	A	E	E	D	A	L	P	L	E	E	I	T	Q	E	L	V	S	Q	Y	L	R	F	I	E	L	F	G	R	K	P	T
Secondary structure
SS confidence
Disorder																								?									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	L	D	S	H	H	H	V	H	M	F	P	Q	I	F	P	I	V	A	R	F	A	A	E	Q	G	I	A	L	R	A	D	R	Q	M	A	F	D	L	P	V	N	L	R	T	T	Q	G	F	S	S	A	F	Y	G	E	E	I	S	E
Secondary structure
SS confidence
Disorder																																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	L	F	L	Q	V	L	D	D	A	G	H	R	G	D	R	S	L	E	V	M	C	H	P	A	F	I	D	N	T	I	R	Q	S	A	Y	C	F	P	R	L	T	E	L	D	V	L	T	S	A	S	L	K	G	A	I	A	Q	R	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		Y	R	L	G	S	Y	R	D	V
Secondary structure
SS confidence
Disorder							?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2i5i chain A domain 1 Region: 2 - 249 Aligned: 245 Modelled: 248 Confidence: 100.0% Identity: 38% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: YdjC-like Phyre2 PDB 2e67 chain D Region: 2 - 249 Aligned: 230 Modelled: 247 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein tthb029; PDBTitle: crystal structure of the hypothetical protein tthb029 from thermus2 thermophilus hb8 Phyre2 PDB 2nly chain A domain 1 Region: 3 - 249 Aligned: 205 Modelled: 227 Confidence: 97.9% Identity: 11% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: Divergent polysaccharide deacetylase Phyre2 PDB 2qv5 chain A Region: 4 - 249 Aligned: 207 Modelled: 217 Confidence: 97.4% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 Phyre2 PDB 2vyo chain A Region: 2 - 249 Aligned: 187 Modelled: 194 Confidence: 97.1% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi Phyre2 PDB 2c1i chain A Region: 2 - 249 Aligned: 178 Modelled: 194 Confidence: 96.7% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. Phyre2 PDB 2x5e chain A Region: 30 - 149 Aligned: 101 Modelled: 108 Confidence: 96.7% Identity: 20% PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa Phyre2 PDB 2dfa chain A domain 1 Region: 30 - 149 Aligned: 101 Modelled: 120 Confidence: 96.6% Identity: 24% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 1ny1 chain A Region: 2 - 249 Aligned: 185 Modelled: 202 Confidence: 96.6% Identity: 21% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 1v6t chain A Region: 30 - 149 Aligned: 101 Modelled: 108 Confidence: 96.6% Identity: 20% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 1xw8 chain A Region: 11 - 149 Aligned: 108 Modelled: 126 Confidence: 95.7% Identity: 22% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: LamB/YcsF-like Phyre2 PDB 1w17 chain A Region: 2 - 249 Aligned: 182 Modelled: 186 Confidence: 95.6% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. Phyre2 PDB 2w3z chain A Region: 2 - 247 Aligned: 201 Modelled: 213 Confidence: 95.2% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase Phyre2 PDB 2c71 chain A domain 1 Region: 3 - 249 Aligned: 181 Modelled: 196 Confidence: 94.6% Identity: 14% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 3qbu chain D Region: 11 - 249 Aligned: 195 Modelled: 211 Confidence: 86.5% Identity: 16% PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori Phyre2 PDB 2c1i chain A domain 1 Region: 3 - 122 Aligned: 93 Modelled: 96 Confidence: 81.9% Identity: 17% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 1z7a chain A domain 1 Region: 11 - 249 Aligned: 194 Modelled: 203 Confidence: 81.1% Identity: 16% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: PA1517-like Phyre2 PDB 2cc0 chain A domain 1 Region: 2 - 248 Aligned: 179 Modelled: 193 Confidence: 76.9% Identity: 17% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2iw0 chain A domain 1 Region: 2 - 249 Aligned: 190 Modelled: 202 Confidence: 73.3% Identity: 16% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 3s6o chain D Region: 11 - 120 Aligned: 84 Modelled: 86 Confidence: 66.2% Identity: 13% PDB header:hydrolase Chain: D: PDB Molecule:polysaccharide deacetylase family protein; PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei Phyre2 1 d2i5ia1 2 c2e67D_ 3 d2nlya1 4 c2qv5A_ 5 c2vyoA_ 6 c2c1iA_ 7 c2x5eA_ 8 d2dfaa1 9 d1ny1a_ 10 d1v6ta_ 11 d1xw8a_ 12 c1w17A_ 13 c2w3zA_ 14 d2c71a1 15 c3qbuD_ 16 d2c1ia1 17 d1z7aa1 18 d2cc0a1 19 d2iw0a1 20 c3s6oD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2i5ia1 100.0 38 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:YdjC-like 2 c2e67D_ 100.0 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein tthb029; PDBTitle: crystal structure of the hypothetical protein tthb029 from thermus2 thermophilus hb8 3 d2nlya1 97.9 11 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 4 c2qv5A_ 97.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 5 c2vyoA_ 97.1 14 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 6 c2c1iA_ 96.7 17 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. 7 c2x5eA_ 96.7 20 PDB header:unknown function Chain: A: PDB Molecule:upf0271 protein pa4511; PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa 8 d2dfaa1 96.6 24 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 9 d1ny1a_ 96.6 21 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 10 d1v6ta_ 96.6 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 11 d1xw8a_ 95.7 22 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 12 c1w17A_ 95.6 20 PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. 13 c2w3zA_ 95.2 17 PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase 14 d2c71a1 94.6 14 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 15 c3qbuD_ 86.5 16 PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori 16 d2c1ia1 81.9 17 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 17 d1z7aa1 81.1 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:PA1517-like 18 d2cc0a1 76.9 17 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 19 d2iw0a1 73.3 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 20 c3s6oD_ 66.2 13 PDB header:hydrolase Chain: D: PDB Molecule:polysaccharide deacetylase family protein; PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei 21 c2iw0A_ not modelled 55.5 14 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 22 c2zktB_ not modelled 51.6 18 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 23 d2j13a1 not modelled 47.7 23 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 24 d1k1xa3 not modelled 47.5 16 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:4-alpha-glucanotransferase, N-terminal domain 25 d1dg9a_ not modelled 37.0 12 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases 26 c1i32D_ not modelled 35.2 15 PDB header:oxidoreductase Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors 27 c3e2vA_ not modelled 33.4 16 PDB header:hydrolase Chain: A: PDB Molecule:3'-5'-exonuclease; PDBTitle: crystal structure of an uncharacterized amidohydrolase from2 saccharomyces cerevisiae 28 c3gk7A_ not modelled 32.4 17 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 29 c3ipwA_ not modelled 28.7 18 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase tatd family protein; PDBTitle: crystal structure of hydrolase tatd family protein from entamoeba2 histolytica 30 c2i09A_ not modelled 28.4 29 PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans 31 c3dnfB_ not modelled 22.0 17 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 32 c1tx2A_ not modelled 21.4 16 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 33 d1tx2a_ not modelled 21.4 16 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 34 d3eeqa1 not modelled 19.9 18 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 35 c2p90B_ not modelled 19.5 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 36 d2pw9a1 not modelled 17.7 12 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:FdhD/NarQ 37 c3rxzA_ not modelled 17.5 12 PDB header:hydrolase Chain: A: PDB Molecule:polysaccharide deacetylase; PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis 38 c2kl8A_ not modelled 16.5 33 PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15 39 c2b4rQ_ not modelled 16.4 19 PDB header:oxidoreductase Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site 40 d1ggaa1 not modelled 16.1 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 41 c3eh7A_ not modelled 14.9 13 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 42 c2oasA_ not modelled 13.9 13 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. 43 c3k2gA_ not modelled 13.3 14 PDB header:resiniferatoxin binding protein Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides 44 c3ke8A_ not modelled 13.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex 45 c2xioA_ not modelled 13.0 23 PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyribonuclease tatdn1; PDBTitle: structure of putative deoxyribonuclease tatdn1 isoform a 46 d1ee0a2 not modelled 12.9 6 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 47 d1y74b1 not modelled 12.4 19 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 48 c1cerC_ not modelled 12.3 24 PDB header:oxidoreductase (aldehyde(d)-nad(a)) Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution 49 c3m8yC_ not modelled 12.2 29 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 50 c3eeqB_ not modelled 12.1 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g PDBTitle: crystal structure of a putative cobalamin biosynthesis2 protein g homolog from sulfolobus solfataricus 51 d1e6va2 not modelled 12.0 20 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 52 c2eq9C_ not modelled 11.8 11 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 53 c2l09A_ not modelled 11.7 16 PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 54 c3tqnC_ not modelled 11.6 7 PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: structure of the transcriptional regulator of the gntr family, from2 coxiella burnetii. 55 c3k13A_ not modelled 11.4 8 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 56 c2l82A_ not modelled 11.4 44 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 57 c3dqqB_ not modelled 11.2 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative trna synthase; PDBTitle: the crystal structure of the putative trna synthase from salmonella2 typhimurium lt2 58 d1k1da2 not modelled 11.2 12 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase), catalytic domain 59 d2g39a2 not modelled 11.1 6 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 60 c2wmyH_ not modelled 11.0 17 PDB header:hydrolase Chain: H: PDB Molecule:putative acid phosphatase wzb; PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate. 61 c3d3uA_ not modelled 11.0 21 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 62 c2fekA_ not modelled 10.7 18 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine- PDBTitle: structure of a protein tyrosine phosphatase 63 c1vbiA_ not modelled 10.7 4 PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 64 c2nvvF_ not modelled 10.5 9 PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. 65 d1u0ua2 not modelled 10.5 12 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 66 c3dxiB_ not modelled 10.4 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative aldolase; PDBTitle: crystal structure of the n-terminal domain of a putative2 aldolase (bvu_2661) from bacteroides vulgatus 67 d1s7ia_ not modelled 10.4 22 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:DGPF domain (Pfam 04946) 68 d1k3ta1 not modelled 10.3 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 69 c3dv0I_ not modelled 10.2 17 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 70 d2p90a1 not modelled 10.0 13 Fold:Phosphorylase/hydrolase-like Superfamily:Cgl1923-like Family:Cgl1923-like 71 d2w6ka1 not modelled 9.8 16 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 72 c3kltB_ not modelled 9.6 17 PDB header:structural protein Chain: B: PDB Molecule:vimentin; PDBTitle: crystal structure of a vimentin fragment 73 c2zxqA_ not modelled 9.6 11 PDB header:hydrolase Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase; PDBTitle: crystal structure of endo-alpha-n-acetylgalactosaminidase2 from bifidobacterium longum (engbf) 74 c2eq7C_ not modelled 9.6 12 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 75 d1e6ya2 not modelled 9.2 25 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain 76 c3by5A_ not modelled 9.2 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:cobalamin biosynthesis protein; PDBTitle: crystal structure of cobalamin biosynthesis protein chig from2 agrobacterium tumefaciens str. c58 77 d3by5a1 not modelled 9.2 13 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 78 d1uxda_ not modelled 9.1 5 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 79 c2pijB_ not modelled 9.0 24 PDB header:transcription Chain: B: PDB Molecule:prophage pfl 6 cro; PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5 80 c2k29A_ not modelled 8.9 19 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 81 d1w85i_ not modelled 8.9 17 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 82 d2axoa1 not modelled 8.2 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Atu2684-like 83 d1d1la_ not modelled 8.2 28 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 84 c3ecqA_ not modelled 8.1 11 PDB header:hydrolase Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase; PDBTitle: endo-alpha-n-acetylgalactosaminidase from streptococcus pneumoniae:2 semet structure 85 c3fcrA_ not modelled 8.0 11 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution 86 c3ggmB_ not modelled 7.9 50 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bt9727_2919; PDBTitle: crystal structure of bt9727_2919 from bacillus2 thuringiensis subsp. northeast structural genomics target3 bur228b 87 c3nuiA_ not modelled 7.9 11 PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 88 c3n2lA_ not modelled 7.9 21 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 2.1 angstrom resolution crystal structure of an orotate2 phosphoribosyltransferase (pyre) from vibrio cholerae o1 biovar eltor3 str. n16961 89 c1w3dA_ not modelled 7.8 17 PDB header:transferase Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: nmr structure of the peripheral-subunit binding domain of2 bacillus stearothermophilus e2p 90 d3buxb3 not modelled 7.7 32 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 91 c3cieC_ not modelled 7.6 11 PDB header:oxidoreductase Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase; PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum 92 d1bi5a2 not modelled 7.5 8 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 93 d1vefa1 not modelled 7.5 7 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 94 c2gi4A_ not modelled 7.3 7 PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni. 95 d2imla1 not modelled 7.1 23 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:MTH863-like 96 d4croa_ not modelled 7.0 28 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 97 d1u0ma2 not modelled 6.9 11 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 98 d1xg8a_ not modelled 6.9 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:YuzD-like 99 d1hbna2 not modelled 6.8 26 Fold:Ferredoxin-like Superfamily:Methyl-coenzyme M reductase subunits Family:Methyl-coenzyme M reductase alpha and beta chain N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0