Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	G	L	R	P	A	L	S	T	F	I	F	L	L	L	I	T	G	G	V	Y	P	L	L	T	T	V	L	G	Q	W	W	F	P	W	Q	A	N	G	S	L	I	R	E	G	D	T	V	R	G	S	A	L	I	G	Q	N	F	T
Secondary structure
SS confidence
Disorder		?	?	?																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	N	G	Y	F	H	G	R	P	S	A	T	A	E	M	P	Y	N	P	Q	A	S	G	G	S	N	L	A	V	S	N	P	E	L	D	K	L	I	A	A	R	V	A	A	L	R	A	A	N	P	D	A	S	A	S	V	P	V	E	L
Secondary structure
SS confidence
Disorder			?	?									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																			?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	T	A	S	A	S	G	L	D	N	N	I	T	P	Q	A	A	A	W	Q	I	P	R	V	A	K	A	R	N	L	S	V	E	Q	L	T	Q	L	I	A	K	Y	S	Q	Q	P	L	V	K	Y	I	G	Q	P	V	V	N	I	V	E
Secondary structure
SS confidence
Disorder																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190
Sequence		L	N	L	A	L	D	K	L	D	E
Secondary structure
SS confidence
Disorder									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1hq1 chain A Region: 141 - 164 Aligned: 24 Modelled: 24 Confidence: 56.0% Identity: 17% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 3ipw chain A Region: 133 - 169 Aligned: 37 Modelled: 37 Confidence: 54.7% Identity: 8% PDB header:hydrolase Chain: A: PDB Molecule:hydrolase tatd family protein; PDBTitle: crystal structure of hydrolase tatd family protein from entamoeba2 histolytica Phyre2 PDB 1dul chain A Region: 141 - 162 Aligned: 22 Modelled: 22 Confidence: 54.5% Identity: 18% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 1qb2 chain A Region: 141 - 164 Aligned: 24 Modelled: 24 Confidence: 53.8% Identity: 29% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 2jqe chain A Region: 141 - 164 Aligned: 24 Modelled: 24 Confidence: 52.2% Identity: 25% PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain Phyre2 PDB 2ffh chain A domain 2 Region: 141 - 164 Aligned: 24 Modelled: 24 Confidence: 49.4% Identity: 25% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 3rcm chain A Region: 125 - 170 Aligned: 45 Modelled: 46 Confidence: 47.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:tatd family hydrolase; PDBTitle: crystal structure of efi target 500140:tatd family hydrolase from2 pseudomonas putida Phyre2 PDB 1qzx chain A domain 2 Region: 141 - 162 Aligned: 22 Modelled: 22 Confidence: 46.0% Identity: 32% Fold: Signal peptide-binding domain Superfamily: Signal peptide-binding domain Family: Signal peptide-binding domain Phyre2 PDB 3e2v chain A Region: 133 - 172 Aligned: 36 Modelled: 40 Confidence: 45.3% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:3'-5'-exonuclease; PDBTitle: crystal structure of an uncharacterized amidohydrolase from2 saccharomyces cerevisiae Phyre2 PDB 3gg7 chain A Region: 134 - 173 Aligned: 36 Modelled: 40 Confidence: 42.2% Identity: 8% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized metalloprotein; PDBTitle: crystal structure of an uncharacterized metalloprotein from2 deinococcus radiodurans Phyre2 PDB 1j6o chain A Region: 131 - 173 Aligned: 39 Modelled: 43 Confidence: 35.0% Identity: 3% Fold: TIM beta/alpha-barrel Superfamily: Metallo-dependent hydrolases Family: TatD Mg-dependent DNase-like Phyre2 PDB 1xwy chain A domain 1 Region: 124 - 170 Aligned: 46 Modelled: 47 Confidence: 33.9% Identity: 13% Fold: TIM beta/alpha-barrel Superfamily: Metallo-dependent hydrolases Family: TatD Mg-dependent DNase-like Phyre2 PDB 2xio chain A Region: 133 - 170 Aligned: 38 Modelled: 38 Confidence: 27.1% Identity: 8% PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyribonuclease tatdn1; PDBTitle: structure of putative deoxyribonuclease tatdn1 isoform a Phyre2 PDB 1zod chain A domain 1 Region: 33 - 105 Aligned: 47 Modelled: 47 Confidence: 26.2% Identity: 19% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 PDB 3qll chain B Region: 117 - 172 Aligned: 55 Modelled: 56 Confidence: 26.2% Identity: 5% PDB header:lyase Chain: B: PDB Molecule:citrate lyase; PDBTitle: crystal structure of ripc from yersinia pestis Phyre2 PDB 1zzm chain A domain 1 Region: 141 - 174 Aligned: 30 Modelled: 34 Confidence: 25.4% Identity: 10% Fold: TIM beta/alpha-barrel Superfamily: Metallo-dependent hydrolases Family: TatD Mg-dependent DNase-like Phyre2 PDB 2y1h chain A Region: 141 - 172 Aligned: 28 Modelled: 32 Confidence: 24.7% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyribonuclease tatdn3; PDBTitle: crystal structure of the human tatd-domain protein 3 (tatdn3) Phyre2 PDB 2fp7 chain B domain 1 Region: 34 - 51 Aligned: 18 Modelled: 18 Confidence: 23.6% Identity: 33% Fold: Trypsin-like serine proteases Superfamily: Trypsin-like serine proteases Family: Viral proteases Phyre2 PDB 2gzx chain B Region: 134 - 165 Aligned: 32 Modelled: 32 Confidence: 22.8% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative tatd related dnase; PDBTitle: crystal structure of the tatd deoxyribonuclease mw0446 from2 staphylococcus aureus. northeast structural genomics consortium3 target zr237. Phyre2 PDB 1toa chain A Region: 124 - 147 Aligned: 24 Modelled: 24 Confidence: 22.1% Identity: 8% PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum Phyre2 1 d1hq1a_ 2 c3ipwA_ 3 d1dula_ 4 d1qb2a_ 5 c2jqeA_ 6 d2ffha2 7 c3rcmA_ 8 d1qzxa2 9 c3e2vA_ 10 c3gg7A_ 11 d1j6oa_ 12 d1xwya1 13 c2xioA_ 14 d1zoda1 15 c3qllB_ 16 d1zzma1 17 c2y1hA_ 18 d2fp7b1 19 c2gzxB_ 20 c1toaA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1hq1a_ 56.0 17 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 2 c3ipwA_ 54.7 8 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase tatd family protein; PDBTitle: crystal structure of hydrolase tatd family protein from entamoeba2 histolytica 3 d1dula_ 54.5 18 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 4 d1qb2a_ 53.8 29 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 5 c2jqeA_ 52.2 25 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 6 d2ffha2 49.4 25 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 7 c3rcmA_ 47.0 13 PDB header:hydrolase Chain: A: PDB Molecule:tatd family hydrolase; PDBTitle: crystal structure of efi target 500140:tatd family hydrolase from2 pseudomonas putida 8 d1qzxa2 46.0 32 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 9 c3e2vA_ 45.3 17 PDB header:hydrolase Chain: A: PDB Molecule:3'-5'-exonuclease; PDBTitle: crystal structure of an uncharacterized amidohydrolase from2 saccharomyces cerevisiae 10 c3gg7A_ 42.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized metalloprotein; PDBTitle: crystal structure of an uncharacterized metalloprotein from2 deinococcus radiodurans 11 d1j6oa_ 35.0 3 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:TatD Mg-dependent DNase-like 12 d1xwya1 33.9 13 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:TatD Mg-dependent DNase-like 13 c2xioA_ 27.1 8 PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyribonuclease tatdn1; PDBTitle: structure of putative deoxyribonuclease tatdn1 isoform a 14 d1zoda1 26.2 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 15 c3qllB_ 26.2 5 PDB header:lyase Chain: B: PDB Molecule:citrate lyase; PDBTitle: crystal structure of ripc from yersinia pestis 16 d1zzma1 25.4 10 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:TatD Mg-dependent DNase-like 17 c2y1hA_ 24.7 18 PDB header:hydrolase Chain: A: PDB Molecule:putative deoxyribonuclease tatdn3; PDBTitle: crystal structure of the human tatd-domain protein 3 (tatdn3) 18 d2fp7b1 23.6 33 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 19 c2gzxB_ 22.8 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative tatd related dnase; PDBTitle: crystal structure of the tatd deoxyribonuclease mw0446 from2 staphylococcus aureus. northeast structural genomics consortium3 target zr237. 20 c1toaA_ 22.1 8 PDB header:binding protein Chain: A: PDB Molecule:protein (periplasmic binding protein troa); PDBTitle: periplasmic zinc binding protein troa from treponema pallidum 21 d1toaa_ not modelled 22.1 8 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 22 c3dxvA_ not modelled 22.1 25 PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae 23 c2ordA_ not modelled 22.0 24 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution 24 c1z7dE_ not modelled 21.9 17 PDB header:transferase Chain: E: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase py00104 from plasmodium yoelii 25 d2ijob1 not modelled 21.8 39 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 26 c2fvmA_ not modelled 21.7 13 PDB header:hydrolase Chain: A: PDB Molecule:dihydropyrimidinase; PDBTitle: crystal structure of dihydropyrimidinase from saccharomyces kluyveri2 in complex with the reaction product n-carbamyl-beta-alanine 27 c3e90B_ not modelled 21.2 39 PDB header:hydrolase Chain: B: PDB Molecule:ns3 protease; PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h 28 c2pb2B_ not modelled 20.7 16 PDB header:transferase Chain: B: PDB Molecule:acetylornithine/succinyldiaminopimelate aminotransferase; PDBTitle: structure of biosynthetic n-acetylornithine aminotransferase from2 salmonella typhimurium: studies on substrate specificity and3 inhibitor binding 29 c2j37W_ not modelled 20.4 29 PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs 30 c2v3cC_ not modelled 20.0 17 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 31 c2ps3A_ not modelled 19.5 13 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 32 d1befa_ not modelled 19.2 33 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 33 c3lkwA_ not modelled 18.8 28 PDB header:viral protein,hydrolase Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active2 site mutant 34 c3dm5A_ not modelled 18.1 29 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 35 c3mfqB_ not modelled 17.9 5 PDB header:metal binding protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: a glance into the metal binding specificity of troa: where elaborate2 behaviors occur in the active center 36 d2byla1 not modelled 17.7 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 37 d2fomb1 not modelled 17.6 33 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 38 c2iy3A_ not modelled 17.3 25 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 39 d1ohwa_ not modelled 17.1 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 40 d2phcb1 not modelled 16.2 29 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 41 c1oatB_ not modelled 15.7 15 PDB header:aminotransferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: ornithine aminotransferase 42 c3n5mD_ not modelled 15.4 14 PDB header:transferase Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystals structure of a bacillus anthracis aminotransferase 43 d1sffa_ not modelled 15.4 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 44 c3fcrA_ not modelled 15.1 26 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution 45 d1vkoa1 not modelled 14.9 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 46 c1qzwC_ not modelled 14.6 29 PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication 47 c3i4jC_ not modelled 14.6 17 PDB header:transferase Chain: C: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans 48 d2pv4a1 not modelled 14.5 29 Fold:Sama2622-like Superfamily:Sama2622-like Family:Sama2622-like 49 c2j289_ not modelled 14.2 18 PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs 50 d1yixa1 not modelled 13.6 19 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:TatD Mg-dependent DNase-like 51 c2zp2B_ not modelled 13.1 25 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 52 d1s0aa_ not modelled 13.1 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 53 c1gw4A_ not modelled 12.6 35 PDB header:high density lipoproteins Chain: A: PDB Molecule:apoa-i; PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure 54 c3hjtB_ not modelled 11.6 21 PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity 55 c3oksB_ not modelled 11.5 13 PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis 56 c3l44A_ not modelled 11.5 15 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1; PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase 57 d1z7da1 not modelled 11.4 17 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 58 c3dodA_ not modelled 11.2 20 PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis 59 c3nuiA_ not modelled 11.0 11 PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 60 c2eh6A_ not modelled 10.6 17 PDB header:transferase Chain: A: PDB Molecule:acetylornithine aminotransferase; PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5 61 d1afwa2 not modelled 10.1 30 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 62 d1d8ca_ not modelled 10.1 36 Fold:TIM beta/alpha-barrel Superfamily:Malate synthase G Family:Malate synthase G 63 c1x3wB_ not modelled 9.9 19 PDB header:hydrolase Chain: B: PDB Molecule:uv excision repair protein rad23; PDBTitle: structure of a peptide:n-glycanase-rad23 complex 64 d1e5pa_ not modelled 9.8 25 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 65 c3ruyB_ not modelled 9.8 8 PDB header:transferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis 66 c3afhA_ not modelled 9.8 17 PDB header:ligase Chain: A: PDB Molecule:glutamyl-trna synthetase 2; PDBTitle: crystal structure of thermotoga maritima nondiscriminating glutamyl-2 trna synthetase in complex with a glutamyl-amp analog 67 d1ldma1 not modelled 9.7 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 68 c2k9sA_ not modelled 9.4 27 PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac 69 d2v9va2 not modelled 9.2 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 70 c2ee7A_ not modelled 9.1 14 PDB header:structural protein Chain: A: PDB Molecule:sperm flagellar protein 1; PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1 71 d1gnsa_ not modelled 9.1 17 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 72 d1i0za1 not modelled 8.9 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 73 d1tw3a1 not modelled 8.9 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain 74 d1p1ja1 not modelled 8.7 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 75 c3c19A_ not modelled 8.5 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mk0293; PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19 76 d2a1ja1 not modelled 8.5 13 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 77 c1u5vA_ not modelled 8.4 13 PDB header:lyase Chain: A: PDB Molecule:cite; PDBTitle: structure of cite complexed with triphosphate group of atp2 form mycobacterium tuberculosis 78 c2ov3A_ not modelled 8.1 25 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein component of an abc PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc2 bound 79 c2kq5A_ not modelled 8.0 14 PDB header:unknown function Chain: A: PDB Molecule:avirulence protein; PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha 80 d1psza_ not modelled 7.9 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 81 c2xstA_ not modelled 7.7 15 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 15; PDBTitle: crystal structure of the human lipocalin 15 82 c3rggD_ not modelled 7.5 9 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 83 d1b8za_ not modelled 7.5 24 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 84 d1oqya3 not modelled 7.4 23 Fold:XPC-binding domain Superfamily:XPC-binding domain Family:XPC-binding domain 85 d1z67a1 not modelled 7.4 9 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 86 c3ls1A_ not modelled 7.3 26 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 87 c2zc1A_ not modelled 7.3 18 PDB header:hydrolase Chain: A: PDB Molecule:phosphotriesterase; PDBTitle: organophosphorus hydrolase from deinococcus radiodurans 88 c2fw9A_ not modelled 7.2 22 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 89 c2huoA_ not modelled 7.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:inositol oxygenase; PDBTitle: crystal structure of mouse myo-inositol oxygenase in complex with2 substrate 90 d3bxda1 not modelled 7.2 11 Fold:HD-domain/PDEase-like Superfamily:HD-domain/PDEase-like Family:MioX-like 91 d1pq4a_ not modelled 7.1 25 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 92 d1znda1 not modelled 7.1 4 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 93 d1u11a_ not modelled 7.1 22 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 94 d1hdgo2 not modelled 7.1 19 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 95 d1x68a2 not modelled 7.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 96 c1xvlC_ not modelled 7.0 14 PDB header:metal transport Chain: C: PDB Molecule:mn transporter; PDBTitle: the three-dimensional structure of mntc from synechocystis2 6803 97 c3hmuA_ not modelled 6.8 17 PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi 98 c1w1nA_ not modelled 6.7 24 PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1; PDBTitle: the solution structure of the fatc domain of the protein2 kinase tor1 from yeast 99 c2e7uA_ not modelled 6.7 14 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0