PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2pb2B_

Fold library id	PDB Header	Molecule	Title
c2pb2B_	PDB header: transferase	Chain: B: PDB Molecule: acetylornithine/succinyldiaminopimelate	PDBTitle: structure of biosynthetic n-acetylornithine2 aminotransferase from salmonella typhimurium: studies on3 substrate specificity and inhibitor binding

Links to external resources
Added to library: Tue Mar 16 14:06:50 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L P V Y A P A D F I P V K G K G S R V W D Q Q G K E Y I D F A G G I A V T A L G H C H P A L V E A L K S Q G E T L W H T S N V F T N E P A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B T T T
S S T
T T
B S
T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L G R K L I D A T F A E R V L F M N S G T E A N E T A F K L A R H Y A C V R H S P F K T K I I A F H N A F H G R S L F T V S V G G Q P K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S T
T T
T T
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S D G F G P K P A D I I H V P F N D L H A V K A V M D D H T C A V V V E P I Q G E G G V Q A A T P E F L K G L R D L C D E H Q A L L V F D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S
S
T T
T T
S T T T T S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V Q C G M G R T G D L F A Y M H Y G V T P D I L T S A K A L G G G F P V S A M L T T Q E I A S A F S T Y G G N P L A C A V A G A A F D I I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T T S S S S T
S
G G G T T T S
T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence T P E V L Q G I H T K R Q Q F V Q H L Q A I D E Q F D I F S D I R G M G L L I G A E L K P K Y K G R A R D F L Y A G A E A G V M V L N A G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
G G G T T
T T
S S T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . .

Sequence D V M R F A P S L V V E E A D I H E G M Q R F A Q A V G K V V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	P	V	Y	A	P	A	D	F	I	P	V	K	G	K	G	S	R	V	W	D	Q	Q	G	K	E	Y	I	D	F	A	G	G	I	A	V	T	A	L	G	H	C	H	P	A	L	V	E	A	L	K	S	Q	G	E	T	L	W	H	T	S	N	V	F	T	N	E	P	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T								B	T					T	T							S	S					T		T	T		B	S													T	T						T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	G	R	K	L	I	D	A	T	F	A	E	R	V	L	F	M	N	S	G	T	E	A	N	E	T	A	F	K	L	A	R	H	Y	A	C	V	R	H	S	P	F	K	T	K	I	I	A	F	H	N	A	F	H	G	R	S	L	F	T	V	S	V	G	G	Q	P	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S		S						S	S																				T		T	T								T	T					S	S							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	D	G	F	G	P	K	P	A	D	I	I	H	V	P	F	N	D	L	H	A	V	K	A	V	M	D	D	H	T	C	A	V	V	V	E	P	I	Q	G	E	G	G	V	Q	A	A	T	P	E	F	L	K	G	L	R	D	L	C	D	E	H	Q	A	L	L	V	F	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S	S	S			S							T	T											T	T								S			T	T	T	T	S																			T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	Q	C	G	M	G	R	T	G	D	L	F	A	Y	M	H	Y	G	V	T	P	D	I	L	T	S	A	K	A	L	G	G	G	F	P	V	S	A	M	L	T	T	Q	E	I	A	S	A	F	S	T	Y	G	G	N	P	L	A	C	A	V	A	G	A	A	F	D	I	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	T	T	T	T	S	S	S	S						T				S						G	G	G	T	T	T	S													T	T																						S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	T	P	E	V	L	Q	G	I	H	T	K	R	Q	Q	F	V	Q	H	L	Q	A	I	D	E	Q	F	D	I	F	S	D	I	R	G	M	G	L	L	I	G	A	E	L	K	P	K	Y	K	G	R	A	R	D	F	L	Y	A	G	A	E	A	G	V	M	V	L	N	A	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																																			T	T								G	G	G	T	T												T	T						S	S	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Sequence	D	V	M	R	F	A	P	S	L	V	V	E	E	A	D	I	H	E	G	M	Q	R	F	A	Q	A	V	G	K	V	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								T	T