Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	V	R	I	Y	T	L	T	L	A	P	S	L	D	S	A	T	I	T	P	Q	I	Y	P	E	G	K	L	R	C	T	A	P	V	F	E	P	G	G	G	G	I	N	V	A	R	A	I	A	H	L	G	G	S	A	T	A	I	F	P
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	G	G	A	T	G	E	H	L	V	S	L	L	A	D	E	N	V	P	V	A	T	V	E	A	K	D	W	T	R	Q	N	L	H	V	H	V	E	A	S	G	E	Q	Y	R	F	V	M	P	G	A	A	L	N	E	D	E	F	R	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	E	E	Q	V	L	E	I	E	S	G	A	I	L	V	I	S	G	S	L	P	P	G	V	K	L	E	K	L	T	Q	L	I	S	A	A	Q	K	Q	G	I	R	C	I	V	D	S	S	G	E	A	L	S	A	A	L	A	I	G	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	E	L	V	K	P	N	Q	K	E	L	S	A	L	V	N	R	E	L	T	Q	P	D	D	V	R	K	A	A	Q	E	I	V	N	S	G	K	A	K	R	V	V	V	S	L	G	P	Q	G	A	L	G	V	D	S	E	N	C	I	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	V	P	P	P	V	K	S	Q	S	T	V	G	A	G	D	S	M	V	G	A	M	T	L	K	L	A	E	N	A	S	L	E	E	M	V	R	F	G	V	A	A	G	S	A	A	T	L	N	Q	G	T	R	L	C	S	H	D	D	T
Secondary structure
SS confidence
Disorder																																																			?		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		Q	K	I	Y	A	Y	L	S	R
Secondary structure
SS confidence
Disorder								?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3cqd chain B Region: 1 - 308 Aligned: 308 Modelled: 308 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 2jg1 chain C Region: 2 - 308 Aligned: 305 Modelled: 303 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate Phyre2 PDB 2jg5 chain B Region: 4 - 308 Aligned: 298 Modelled: 305 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus Phyre2 PDB 2abq chain A domain 1 Region: 4 - 309 Aligned: 299 Modelled: 306 Confidence: 100.0% Identity: 31% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2f02 chain A domain 1 Region: 4 - 308 Aligned: 303 Modelled: 299 Confidence: 100.0% Identity: 26% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2ajr chain A domain 1 Region: 4 - 308 Aligned: 304 Modelled: 305 Confidence: 100.0% Identity: 22% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1rkd chain A Region: 2 - 305 Aligned: 298 Modelled: 304 Confidence: 100.0% Identity: 19% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3jul chain A Region: 4 - 308 Aligned: 288 Modelled: 299 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate Phyre2 PDB 1vm7 chain A Region: 1 - 307 Aligned: 294 Modelled: 297 Confidence: 100.0% Identity: 22% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2fv7 chain A domain 1 Region: 1 - 304 Aligned: 299 Modelled: 304 Confidence: 100.0% Identity: 16% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3kzh chain A Region: 2 - 308 Aligned: 299 Modelled: 307 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 2rbc chain A Region: 2 - 309 Aligned: 295 Modelled: 308 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 2afb chain A domain 1 Region: 1 - 305 Aligned: 300 Modelled: 293 Confidence: 100.0% Identity: 16% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2nwh chain A Region: 1 - 309 Aligned: 298 Modelled: 301 Confidence: 100.0% Identity: 21% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 3go6 chain B Region: 2 - 305 Aligned: 273 Modelled: 277 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 2pkk chain A Region: 3 - 306 Aligned: 288 Modelled: 304 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 3pl2 chain D Region: 2 - 304 Aligned: 293 Modelled: 303 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 2c49 chain A Region: 1 - 308 Aligned: 288 Modelled: 297 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Phyre2 PDB 1bx4 chain A Region: 2 - 299 Aligned: 296 Modelled: 298 Confidence: 100.0% Identity: 18% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3i3y chain B Region: 1 - 305 Aligned: 276 Modelled: 282 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae Phyre2 1 c3cqdB_ 2 c2jg1C_ 3 c2jg5B_ 4 d2abqa1 5 d2f02a1 6 d2ajra1 7 d1rkda_ 8 c3julA_ 9 d1vm7a_ 10 d2fv7a1 11 c3kzhA_ 12 c2rbcA_ 13 d2afba1 14 c2nwhA_ 15 c3go6B_ 16 c2pkkA_ 17 c3pl2D_ 18 c2c49A_ 19 d1bx4a_ 20 c3i3yB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3cqdB_ 100.0 100 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 2 c2jg1C_ 100.0 24 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 3 c2jg5B_ 100.0 31 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 4 d2abqa1 100.0 31 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 5 d2f02a1 100.0 26 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 6 d2ajra1 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 7 d1rkda_ 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 8 c3julA_ 100.0 22 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 9 d1vm7a_ 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 10 d2fv7a1 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 11 c3kzhA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 12 c2rbcA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 13 d2afba1 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 14 c2nwhA_ 100.0 21 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 15 c3go6B_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 16 c2pkkA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 17 c3pl2D_ 100.0 17 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 18 c2c49A_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 19 d1bx4a_ 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 20 c3i3yB_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 21 d1v19a_ not modelled 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 22 c3iq0B_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 23 c2xtbA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 24 c3looC_ not modelled 100.0 17 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 25 c3ktnA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 26 c3b1qD_ not modelled 100.0 15 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 27 c2qcvA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 28 c3in1A_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 29 c2absA_ not modelled 100.0 20 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 30 d2absa1 not modelled 100.0 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 31 c2varB_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 32 c3bf5A_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 33 d2dcna1 not modelled 100.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 34 c3b3lC_ not modelled 100.0 15 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 35 c3gbuD_ not modelled 100.0 18 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 36 d1tyya_ not modelled 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 37 c1tz6B_ not modelled 100.0 21 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 38 c3lhxA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 39 c3lkiA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 40 c2qhpA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 41 c3kd6B_ not modelled 100.0 13 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 42 d1vk4a_ not modelled 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 43 c3hj6B_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 44 c2ddmA_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 c2i5bC_ not modelled 99.7 21 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 46 d1ub0a_ not modelled 99.7 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 47 c3mbjA_ not modelled 99.6 14 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 48 d1vi9a_ not modelled 99.6 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 49 c3ibqA_ not modelled 99.6 15 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 50 d1lhpa_ not modelled 99.6 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 51 c3rm5B_ not modelled 99.4 20 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 52 c3dzvB_ not modelled 99.3 15 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 53 d1jxha_ not modelled 99.2 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 54 d1kyha_ not modelled 99.2 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 55 d1v8aa_ not modelled 99.1 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 56 d2ax3a1 not modelled 98.9 13 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 57 c2ax3A_ not modelled 98.7 14 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 58 d1ekqa_ not modelled 98.7 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 59 c2r3bA_ not modelled 98.7 13 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 60 d1gc5a_ not modelled 98.7 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 61 d1l2la_ not modelled 98.6 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 62 d1ua4a_ not modelled 98.6 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 63 d1u2xa_ not modelled 98.5 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 64 c3drwA_ not modelled 98.5 15 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 65 c3bgkA_ not modelled 98.4 11 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 66 c3nm3D_ not modelled 98.3 21 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 67 c3k5wA_ not modelled 98.2 13 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 68 c2f00A_ not modelled 89.8 18 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc 69 c2vxyA_ not modelled 84.5 11 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution 70 d1p3da1 not modelled 82.5 18 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 71 c3g5rA_ not modelled 79.2 27 PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate 72 c2a87A_ not modelled 76.2 27 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase 73 c3kd9B_ not modelled 71.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii 74 c3dhnA_ not modelled 69.2 27 PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310. 75 c1gqqA_ not modelled 67.4 22 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 76 c1vi2B_ not modelled 67.2 15 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad 77 d1djqa2 not modelled 62.8 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like 78 c3kpgA_ not modelled 62.1 37 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone 79 c3d8xB_ not modelled 59.2 23 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 80 c2r60A_ not modelled 58.4 19 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 81 d1ofua1 not modelled 58.1 12 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 82 c1gpjA_ not modelled 58.0 15 PDB header:reductase Chain: A: PDB Molecule:glutamyl-trna reductase; PDBTitle: glutamyl-trna reductase from methanopyrus kandleri 83 d1hdoa_ not modelled 57.5 24 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 84 d2afhe1 not modelled 56.8 30 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 85 c3k96B_ not modelled 56.5 12 PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+]; PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii 86 d1j6ua1 not modelled 56.3 19 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 87 c1xdiA_ not modelled 55.0 33 PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis 88 c3ab1B_ not modelled 53.9 27 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase 89 d1ebda2 not modelled 53.9 18 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 90 c1v59B_ not modelled 53.6 23 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ 91 c3c1oA_ not modelled 50.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages 92 d2d5ba2 not modelled 49.5 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 93 c1i8tB_ not modelled 49.3 23 PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: strcuture of udp-galactopyranose mutase from e.coli 94 d1uz5a3 not modelled 48.3 20 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 95 d1w5fa1 not modelled 48.0 14 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 96 c2q0lA_ not modelled 46.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+ 97 c3rfxB_ not modelled 46.0 25 PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad 98 d1n1ea2 not modelled 45.8 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 99 d1rqga2 not modelled 44.7 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 100 d1cp2a_ not modelled 44.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 101 c3etjB_ not modelled 44.4 27 PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi 102 d2ax3a2 not modelled 44.0 19 Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like 103 c2eq8E_ not modelled 41.9 33 PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 104 c3tqoA_ not modelled 41.3 6 PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii. 105 d1vi2a1 not modelled 40.8 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 106 c3p19A_ not modelled 40.6 29 PDB header:oxidoreductase Chain: A: PDB Molecule:putative blue fluorescent protein; PDBTitle: improved nadph-dependent blue fluorescent protein 107 d2vapa1 not modelled 40.6 18 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 108 c2yx6C_ not modelled 40.3 12 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein ph0822; PDBTitle: crystal structure of ph0822 109 c3i3lA_ not modelled 40.2 37 PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase 110 d1g3qa_ not modelled 38.9 34 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 111 c1m67A_ not modelled 38.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of leishmania mexicana gpdh complexed with inhibitor2 2-bromo-6-hydroxy-purine 112 c2f06B_ not modelled 38.3 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 113 d1i8ta1 not modelled 38.3 23 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:UDP-galactopyranose mutase, N-terminal domain 114 c3ghyA_ not modelled 38.3 23 PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2 115 d2obba1 not modelled 37.5 2 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 116 c2weuD_ not modelled 37.1 17 PDB header:antifungal protein Chain: D: PDB Molecule:tryptophan 5-halogenase; PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan 117 d1wu2a3 not modelled 37.1 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 118 c1w59B_ not modelled 36.7 18 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 119 c2vawA_ not modelled 35.7 12 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 120 c3allA_ not modelled 34.8 21 PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0