Phyre 2 Results for P06999

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Email | l.a.kelley@imperial.ac.uk
Description | P06999
Date | Thu Jan 5 10:59:52 GMT 2012
Unique Job ID | eb89204ea8e2de1c

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3cqdB_
Top template information
PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
308 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | V | R | I | Y | T | L | T | L | A | P | S | L | D | S | A | T | I | T | P | Q | I | Y | P | E | G | K | L | R | C | T | A | P | V | F | E | P | G | G | G | G | I | N | V | A | R | A | I | A | H | L | G | G | S | A | T | A | I | F | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | G | G | A | T | G | E | H | L | V | S | L | L | A | D | E | N | V | P | V | A | T | V | E | A | K | D | W | T | R | Q | N | L | H | V | H | V | E | A | S | G | E | Q | Y | R | F | V | M | P | G | A | A | L | N | E | D | E | F | R | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | E | E | Q | V | L | E | I | E | S | G | A | I | L | V | I | S | G | S | L | P | P | G | V | K | L | E | K | L | T | Q | L | I | S | A | A | Q | K | Q | G | I | R | C | I | V | D | S | S | G | E | A | L | S | A | A | L | A | I | G | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | I | E | L | V | K | P | N | Q | K | E | L | S | A | L | V | N | R | E | L | T | Q | P | D | D | V | R | K | A | A | Q | E | I | V | N | S | G | K | A | K | R | V | V | V | S | L | G | P | Q | G | A | L | G | V | D | S | E | N | C | I | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | V | P | P | P | V | K | S | Q | S | T | V | G | A | G | D | S | M | V | G | A | M | T | L | K | L | A | E | N | A | S | L | E | E | M | V | R | F | G | V | A | A | G | S | A | A | T | L | N | Q | G | T | R | L | C | S | H | D | D | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | .
Sequence |  | Q | K | I | Y | A | Y | L | S | R
Secondary structure |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3cqdB_ |

### PDB 3cqd chain B

Region: 1 - 308
Aligned: 308
Modelled: 308
Confidence: 100.0%
Identity: 100%
PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2;
PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli

Phyre2
2 |
| c2jg1C_ |

### PDB 2jg1 chain C

Region: 2 - 308
Aligned: 305
Modelled: 303
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: C: PDB Molecule:tagatose-6-phosphate kinase;
PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate

Phyre2
3 |
| c2jg5B_ |

### PDB 2jg5 chain B

Region: 4 - 308
Aligned: 298
Modelled: 305
Confidence: 100.0%
Identity: 31%
PDB header:transferase
Chain: B: PDB Molecule:fructose 1-phosphate kinase;
PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus

Phyre2
4 |
| d2abqa1 |

### PDB 2abq chain A domain 1

Region: 4 - 309
Aligned: 299
Modelled: 306
Confidence: 100.0%
Identity: 31%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
5 |
| d2f02a1 |

### PDB 2f02 chain A domain 1

Region: 4 - 308
Aligned: 303
Modelled: 299
Confidence: 100.0%
Identity: 26%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
6 |
| d2ajra1 |

### PDB 2ajr chain A domain 1

Region: 4 - 308
Aligned: 304
Modelled: 305
Confidence: 100.0%
Identity: 22%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
7 |
| d1rkda_ |

### PDB 1rkd chain A

Region: 2 - 305
Aligned: 298
Modelled: 304
Confidence: 100.0%
Identity: 19%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
8 |
| c3julA_ |

### PDB 3jul chain A

Region: 4 - 308
Aligned: 288
Modelled: 299
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:lin2199 protein;
PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate

Phyre2
9 |
| d1vm7a_ |

### PDB 1vm7 chain A

Region: 1 - 307
Aligned: 294
Modelled: 297
Confidence: 100.0%
Identity: 22%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
10 |
| d2fv7a1 |

### PDB 2fv7 chain A domain 1

Region: 1 - 304
Aligned: 299
Modelled: 304
Confidence: 100.0%
Identity: 16%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
11 |
| c3kzhA_ |

### PDB 3kzh chain A

Region: 2 - 308
Aligned: 299
Modelled: 307
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:probable sugar kinase;
PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens

Phyre2
12 |
| c2rbcA_ |

### PDB 2rbc chain A

Region: 2 - 309
Aligned: 295
Modelled: 308
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:sugar kinase;
PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens

Phyre2
13 |
| d2afba1 |

### PDB 2afb chain A domain 1

Region: 1 - 305
Aligned: 300
Modelled: 293
Confidence: 100.0%
Identity: 16%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
14 |
| c2nwhA_ |

### PDB 2nwh chain A

Region: 1 - 309
Aligned: 298
Modelled: 301
Confidence: 100.0%
Identity: 21%
PDB header:signaling protein,transferase
Chain: A: PDB Molecule:carbohydrate kinase;
PDBTitle: carbohydrate kinase from agrobacterium tumefaciens

Phyre2
15 |
| c3go6B_ |

### PDB 3go6 chain B

Region: 2 - 305
Aligned: 273
Modelled: 277
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:ribokinase rbsk;
PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp

Phyre2
16 |
| c2pkkA_ |

### PDB 2pkk chain A

Region: 3 - 306
Aligned: 288
Modelled: 304
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:adenosine kinase;
PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine

Phyre2
17 |
| c3pl2D_ |

### PDB 3pl2 chain D

Region: 2 - 304
Aligned: 293
Modelled: 303
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: D: PDB Molecule:sugar kinase, ribokinase family;
PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution

Phyre2
18 |
| c2c49A_ |

### PDB 2c49 chain A

Region: 1 - 308
Aligned: 288
Modelled: 297
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:sugar kinase mj0406;
PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family

Phyre2
19 |
| d1bx4a_ |

### PDB 1bx4 chain A

Region: 2 - 299
Aligned: 296
Modelled: 298
Confidence: 100.0%
Identity: 18%
Fold: Ribokinase-like
Superfamily: Ribokinase-like
Family: Ribokinase-like

Phyre2
20 |
| c3i3yB_ |

### PDB 3i3y chain B

Region: 1 - 305
Aligned: 276
Modelled: 282
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase;
PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3cqdB_ |
|  | 100.0 | 100 | PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli
2 | c2jg1C_ |
|  | 100.0 | 24 | PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate
3 | c2jg5B_ |
|  | 100.0 | 31 | PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus
4 | d2abqa1 |
|  | 100.0 | 31 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
5 | d2f02a1 |
|  | 100.0 | 26 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
6 | d2ajra1 |
|  | 100.0 | 22 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
7 | d1rkda_ |
|  | 100.0 | 19 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
8 | c3julA_ |
|  | 100.0 | 22 | PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate
9 | d1vm7a_ |
|  | 100.0 | 22 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
10 | d2fv7a1 |
|  | 100.0 | 16 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
11 | c3kzhA_ |
|  | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens
12 | c2rbcA_ |
|  | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens
13 | d2afba1 |
|  | 100.0 | 16 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
14 | c2nwhA_ |
|  | 100.0 | 21 | PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens
15 | c3go6B_ |
|  | 100.0 | 23 | PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp
16 | c2pkkA_ |
|  | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine
17 | c3pl2D_ |
|  | 100.0 | 17 | PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution
18 | c2c49A_ |
|  | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family
19 | d1bx4a_ |
|  | 100.0 | 18 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
20 | c3i3yB_ |
|  | 100.0 | 17 | PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae
21 | d1v19a_ |
| not modelled | 100.0 | 19 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
22 | c3iq0B_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli
23 | c2xtbA_ |
| not modelled | 100.0 | 19 | PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator
24 | c3looC_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate
25 | c3ktnA_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis
26 | c3b1qD_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine
27 | c2qcvA_ |
| not modelled | 100.0 | 16 | PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution
28 | c3in1A_ |
| not modelled | 100.0 | 16 | PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli
29 | c2absA_ |
| not modelled | 100.0 | 20 | PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp
30 | d2absa1 |
| not modelled | 100.0 | 20 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
31 | c2varB_ |
| not modelled | 100.0 | 13 | PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate
32 | c3bf5A_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution
33 | d2dcna1 |
| not modelled | 100.0 | 15 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
34 | c3b3lC_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase
35 | c3gbuD_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp
36 | d1tyya_ |
| not modelled | 100.0 | 22 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
37 | c1tz6B_ |
| not modelled | 100.0 | 21 | PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog
38 | c3lhxA_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri
39 | c3lkiA_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa
40 | c2qhpA_ |
| not modelled | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution
41 | c3kd6B_ |
| not modelled | 100.0 | 13 | PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp
42 | d1vk4a_ |
| not modelled | 100.0 | 18 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like
43 | c3hj6B_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk)
44 | c2ddmA_ |
| not modelled | 99.9 | 17 | PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution
45 | c2i5bC_ |
| not modelled | 99.7 | 21 | PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution
46 | d1ub0a_ |
| not modelled | 99.7 | 24 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases
47 | c3mbjA_ |
| not modelled | 99.6 | 14 | PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form)
48 | d1vi9a_ |
| not modelled | 99.6 | 20 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase
49 | c3ibqA_ |
| not modelled | 99.6 | 15 | PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp
50 | d1lhpa_ |
| not modelled | 99.6 | 17 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase
51 | c3rm5B_ |
| not modelled | 99.4 | 20 | PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast
52 | c3dzvB_ |
| not modelled | 99.3 | 15 | PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution
53 | d1jxha_ |
| not modelled | 99.2 | 20 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases
54 | d1kyha_ |
| not modelled | 99.2 | 14 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like
55 | d1v8aa_ |
| not modelled | 99.1 | 18 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases
56 | d2ax3a1 |
| not modelled | 98.9 | 13 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like
57 | c2ax3A_ |
| not modelled | 98.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution
58 | d1ekqa_ |
| not modelled | 98.7 | 14 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases
59 | c2r3bA_ |
| not modelled | 98.7 | 13 | PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution
60 | d1gc5a_ |
| not modelled | 98.7 | 16 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase
61 | d1l2la_ |
| not modelled | 98.6 | 17 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase
62 | d1ua4a_ |
| not modelled | 98.6 | 15 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase
63 | d1u2xa_ |
| not modelled | 98.5 | 14 | Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase
64 | c3drwA_ |
| not modelled | 98.5 | 15 | PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp
65 | c3bgkA_ |
| not modelled | 98.4 | 11 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans
66 | c3nm3D_ |
| not modelled | 98.3 | 21 | PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes
67 | c3k5wA_ |
| not modelled | 98.2 | 13 | PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori
68 | c2f00A_ |
| not modelled | 89.8 | 18 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc
69 | c2vxyA_ |
| not modelled | 84.5 | 11 | PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: the structure of ftsz from bacillus subtilis at 1.7a2 resolution
70 | d1p3da1 |
| not modelled | 82.5 | 18 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
71 | c3g5rA_ |
| not modelled | 79.2 | 27 | PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate
72 | c2a87A_ |
| not modelled | 76.2 | 27 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of m. tuberculosis thioredoxin reductase
73 | c3kd9B_ |
| not modelled | 71.7 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: crystal structure of pyridine nucleotide disulfide oxidoreductase from2 pyrococcus horikoshii
74 | c3dhnA_ |
| not modelled | 69.2 | 27 | PDB header:isomerase, lyase Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase; PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310.
75 | c1gqqA_ |
| not modelled | 67.4 | 22 | PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae
76 | c1vi2B_ |
| not modelled | 67.2 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad
77 | d1djqa2 |
| not modelled | 62.8 | 15 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like
78 | c3kpgA_ |
| not modelled | 62.1 | 37 | PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone
79 | c3d8xB_ |
| not modelled | 59.2 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1
80 | c2r60A_ |
| not modelled | 58.4 | 19 | PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
81 | d1ofua1 |
| not modelled | 58.1 | 12 | Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain
82 | c1gpjA_ |
| not modelled | 58.0 | 15 | PDB header:reductase Chain: A: PDB Molecule:glutamyl-trna reductase; PDBTitle: glutamyl-trna reductase from methanopyrus kandleri
83 | d1hdoa_ |
| not modelled | 57.5 | 24 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
84 | d2afhe1 |
| not modelled | 56.8 | 30 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
85 | c3k96B_ |
| not modelled | 56.5 | 12 | PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+]; PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii
86 | d1j6ua1 |
| not modelled | 56.3 | 19 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
87 | c1xdiA_ |
| not modelled | 55.0 | 33 | PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis
88 | c3ab1B_ |
| not modelled | 53.9 | 27 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase
89 | d1ebda2 |
| not modelled | 53.9 | 18 | Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains
90 | c1v59B_ |
| not modelled | 53.6 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
91 | c3c1oA_ |
| not modelled | 50.4 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:eugenol synthase; PDBTitle: the multiple phenylpropene synthases in both clarkia2 breweri and petunia hybrida represent two distinct lineages
92 | d2d5ba2 |
| not modelled | 49.5 | 17 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
93 | c1i8tB_ |
| not modelled | 49.3 | 23 | PDB header:isomerase Chain: B: PDB Molecule:udp-galactopyranose mutase; PDBTitle: strcuture of udp-galactopyranose mutase from e.coli
94 | d1uz5a3 |
| not modelled | 48.3 | 20 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
95 | d1w5fa1 |
| not modelled | 48.0 | 14 | Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain
96 | c2q0lA_ |
| not modelled | 46.1 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+
97 | c3rfxB_ |
| not modelled | 46.0 | 25 | PDB header:oxidoreductase Chain: B: PDB Molecule:uronate dehydrogenase; PDBTitle: crystal structure of uronate dehydrogenase from agrobacterium2 tumefaciens, y136a mutant complexed with nad
98 | d1n1ea2 |
| not modelled | 45.8 | 13 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
99 | d1rqga2 |
| not modelled | 44.7 | 14 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
100 | d1cp2a_ |
| not modelled | 44.6 | 23 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
101 | c3etjB_ |
| not modelled | 44.4 | 27 | PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase atpase PDBTitle: crystal structure e. coli purk in complex with mg, adp, and2 pi
102 | d2ax3a2 |
| not modelled | 44.0 | 19 | Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like
103 | c2eq8E_ |
| not modelled | 41.9 | 33 | PDB header:oxidoreductase Chain: E: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
104 | c3tqoA_ |
| not modelled | 41.3 | 6 | PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii.
105 | d1vi2a1 |
| not modelled | 40.8 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
106 | c3p19A_ |
| not modelled | 40.6 | 29 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative blue fluorescent protein; PDBTitle: improved nadph-dependent blue fluorescent protein
107 | d2vapa1 |
| not modelled | 40.6 | 18 | Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain
108 | c2yx6C_ |
| not modelled | 40.3 | 12 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein ph0822; PDBTitle: crystal structure of ph0822
109 | c3i3lA_ |
| not modelled | 40.2 | 37 | PDB header:hydrolase Chain: A: PDB Molecule:alkylhalidase cmls; PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
110 | d1g3qa_ |
| not modelled | 38.9 | 34 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
111 | c1m67A_ |
| not modelled | 38.4 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of leishmania mexicana gpdh complexed with inhibitor2 2-bromo-6-hydroxy-purine
112 | c2f06B_ |
| not modelled | 38.3 | 10 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron
113 | d1i8ta1 |
| not modelled | 38.3 | 23 | Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:UDP-galactopyranose mutase, N-terminal domain
114 | c3ghyA_ |
| not modelled | 38.3 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:ketopantoate reductase protein; PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2
115 | d2obba1 |
| not modelled | 37.5 | 2 | Fold:HAD-like Superfamily:HAD-like Family:BT0820-like
116 | c2weuD_ |
| not modelled | 37.1 | 17 | PDB header:antifungal protein Chain: D: PDB Molecule:tryptophan 5-halogenase; PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan
117 | d1wu2a3 |
| not modelled | 37.1 | 10 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
118 | c1w59B_ |
| not modelled | 36.7 | 18 | PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii)
119 | c2vawA_ |
| not modelled | 35.7 | 12 | PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp
120 | c3allA_ |
| not modelled | 34.8 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a

Binding site prediction |

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0