Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	A	V	T	V	N	D	D	G	L	V	L	R	L	Y	I	Q	P	K	A	S	R	D	S	I	V	G	L	H	G	D	E	V	K	V	A	I	T	A	P	P	V	D	G	Q	A	N	S	H	L	V	K	F	L	G	K	Q	F	R
Secondary structure
SS confidence
Disorder		?	?	?	?			?																	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Sequence		V	A	K	S	Q	V	V	I	E	K	G	E	L	G	R	H	K	Q	I	K	I	I	N	P	Q	Q	I	P	P	E	I	A	A	L	I	N
Secondary structure
SS confidence
Disorder		?			?						?	?											?			?	?	?	?						?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yh5 chain A domain 1 Region: 1 - 96 Aligned: 96 Modelled: 96 Confidence: 100.0% Identity: 98% Fold: YggU-like Superfamily: YggU-like Family: YggU-like Phyre2 PDB 1jrm chain A Region: 1 - 95 Aligned: 92 Modelled: 92 Confidence: 99.9% Identity: 23% Fold: YggU-like Superfamily: YggU-like Family: YggU-like Phyre2 PDB 3t5s chain A Region: 13 - 70 Aligned: 56 Modelled: 58 Confidence: 85.5% Identity: 13% PDB header:immune system Chain: A: PDB Molecule:macrophage migration inhibitory factor; PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia Phyre2 PDB 1t6a chain A Region: 27 - 60 Aligned: 33 Modelled: 34 Confidence: 75.7% Identity: 36% Fold: TBP-like Superfamily: Rbstp2229 protein Family: Rbstp2229 protein Phyre2 PDB 1ffv chain B domain 2 Region: 31 - 75 Aligned: 45 Modelled: 45 Confidence: 64.3% Identity: 4% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1v97 chain A domain 5 Region: 30 - 75 Aligned: 46 Modelled: 46 Confidence: 63.1% Identity: 13% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 2gdg chain A domain 1 Region: 13 - 70 Aligned: 57 Modelled: 58 Confidence: 61.5% Identity: 18% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: MIF-related Phyre2 PDB 1n62 chain B domain 2 Region: 30 - 75 Aligned: 46 Modelled: 46 Confidence: 59.0% Identity: 9% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 3hrd chain F Region: 19 - 75 Aligned: 57 Modelled: 57 Confidence: 56.8% Identity: 7% PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Phyre2 PDB 3b64 chain A Region: 13 - 70 Aligned: 57 Modelled: 58 Confidence: 53.6% Identity: 9% PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major Phyre2 PDB 1fim chain A Region: 13 - 70 Aligned: 57 Modelled: 58 Confidence: 51.8% Identity: 18% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: MIF-related Phyre2 PDB 3eub chain L Region: 30 - 75 Aligned: 46 Modelled: 46 Confidence: 49.7% Identity: 13% PDB header:oxidoreductase Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine Phyre2 PDB 1gd0 chain A Region: 13 - 70 Aligned: 57 Modelled: 58 Confidence: 48.3% Identity: 18% Fold: Tautomerase/MIF Superfamily: Tautomerase/MIF Family: MIF-related Phyre2 PDB 1t3q chain B domain 2 Region: 19 - 74 Aligned: 56 Modelled: 56 Confidence: 48.1% Identity: 16% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1n62 chain E Region: 30 - 75 Aligned: 46 Modelled: 46 Confidence: 47.4% Identity: 9% PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state Phyre2 PDB 1ffv chain B Region: 30 - 75 Aligned: 46 Modelled: 46 Confidence: 46.9% Identity: 4% PDB header:hydrolase Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava Phyre2 PDB 1b24 chain A domain 1 Region: 46 - 73 Aligned: 27 Modelled: 28 Confidence: 46.4% Identity: 37% Fold: Homing endonuclease-like Superfamily: Homing endonucleases Family: Group I mobile intron endonuclease Phyre2 PDB 1jro chain B domain 2 Region: 30 - 75 Aligned: 46 Modelled: 46 Confidence: 46.3% Identity: 11% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 3fwt chain A Region: 12 - 70 Aligned: 58 Modelled: 59 Confidence: 41.6% Identity: 9% PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2 Phyre2 PDB 1sb3 chain D Region: 31 - 75 Aligned: 45 Modelled: 45 Confidence: 40.9% Identity: 9% PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica Phyre2 1 d1yh5a1 2 d1jrma_ 3 c3t5sA_ 4 d1t6aa_ 5 d1ffvb2 6 d1v97a5 7 d2gdga1 8 d1n62b2 9 c3hrdF_ 10 c3b64A_ 11 d1fima_ 12 c3eubL_ 13 d1gd0a_ 14 d1t3qb2 15 c1n62E_ 16 c1ffvB_ 17 d1b24a1 18 d1jrob2 19 c3fwtA_ 20 c1sb3D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1yh5a1 100.0 98 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 2 d1jrma_ 99.9 23 Fold:YggU-like Superfamily:YggU-like Family:YggU-like 3 c3t5sA_ 85.5 13 PDB header:immune system Chain: A: PDB Molecule:macrophage migration inhibitory factor; PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia 4 d1t6aa_ 75.7 36 Fold:TBP-like Superfamily:Rbstp2229 protein Family:Rbstp2229 protein 5 d1ffvb2 64.3 4 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 6 d1v97a5 63.1 13 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 7 d2gdga1 61.5 18 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 8 d1n62b2 59.0 9 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 9 c3hrdF_ 56.8 7 PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase 10 c3b64A_ 53.6 9 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major 11 d1fima_ 51.8 18 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 12 c3eubL_ 49.7 13 PDB header:oxidoreductase Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine 13 d1gd0a_ 48.3 18 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 14 d1t3qb2 48.1 16 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 15 c1n62E_ 47.4 9 PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state 16 c1ffvB_ 46.9 4 PDB header:hydrolase Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava 17 d1b24a1 46.4 37 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Group I mobile intron endonuclease 18 d1jrob2 46.3 11 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 19 c3fwtA_ 41.6 9 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2 20 c1sb3D_ 40.9 9 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 21 d1dpta_ not modelled 40.6 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 22 d1hfoa_ not modelled 37.7 12 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 23 c3gacD_ not modelled 37.6 20 PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp 24 c1t3qB_ not modelled 37.5 20 PDB header:oxidoreductase Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 25 c2w54F_ not modelled 37.1 11 PDB header:oxidoreductase Chain: F: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde 26 d1rm6a2 not modelled 36.7 9 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 27 c2xczA_ not modelled 30.0 7 PDB header:immune system Chain: A: PDB Molecule:possible atls1-like light-inducible protein; PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus 28 d1uiza_ not modelled 28.1 20 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MIF-related 29 c2os5C_ not modelled 27.7 11 PDB header:cytokine Chain: C: PDB Molecule:acemif; PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum 30 c2l0kA_ not modelled 26.8 35 PDB header:transcription Chain: A: PDB Molecule:stage iii sporulation protein d; PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna 31 c3abfB_ not modelled 25.1 10 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 32 c1wygA_ not modelled 24.9 9 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) 33 d1otfa_ not modelled 24.0 5 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 34 c3glaA_ not modelled 23.9 13 PDB header:chaperone Chain: A: PDB Molecule:low molecular weight heat shock protein; PDBTitle: crystal structure of the hspa from xanthomonas axonopodis 35 c3m20A_ not modelled 23.4 14 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 36 c3mb2G_ not modelled 22.2 19 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 37 d1xdpa2 not modelled 21.4 14 Fold:PHP14-like Superfamily:PHP14-like Family:PPK middle domain-like 38 d1bjpa_ not modelled 21.4 5 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 39 c3p1tB_ not modelled 20.9 11 PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution 40 d1gyxa_ not modelled 20.1 10 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 41 c2x4kB_ not modelled 18.7 10 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) 42 c2op8A_ not modelled 18.6 5 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 43 d1oeya_ not modelled 18.3 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 44 d1qbjc_ not modelled 18.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 45 d1mwwa_ not modelled 18.0 19 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:Hypothetical protein HI1388.1 46 d2aala1 not modelled 17.8 14 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MSAD-like 47 c3ry0A_ not modelled 17.7 10 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 48 d2gxba1 not modelled 17.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 49 d1qgpa_ not modelled 17.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 50 c1z2zB_ not modelled 16.9 16 PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 51 c3fkdC_ not modelled 16.9 27 PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis 52 c2kvrA_ not modelled 16.7 8 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 7; PDBTitle: solution nmr structure of human ubiquitin specific protease2 usp7 ubl domain (residues 537-664). nesg target hr4395c/3 sgc-toronto 53 c2ormA_ not modelled 15.6 14 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. 54 c1sb7A_ not modelled 14.9 19 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud 55 d1szwa_ not modelled 14.9 19 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:tRNA pseudouridine synthase TruD 56 d1wh0a_ not modelled 14.6 12 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:GS domain 57 c3ggeA_ not modelled 14.5 14 PDB header:protein binding Chain: A: PDB Molecule:pdz domain-containing protein gipc2; PDBTitle: crystal structure of the pdz domain of pdz domain-containing protein2 gipc2 58 c3n4dF_ not modelled 13.8 11 PDB header:hydrolase Chain: F: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of cg10062 inactivated by(r)-oxirane-2-carboxylate 59 c2flzC_ not modelled 13.7 11 PDB header:hydrolase Chain: C: PDB Molecule:cis-3-chloroacrylic acid dehalogenase; PDBTitle: the x-ray structure of cis-3-chloroacrylic acid dehalogenase (cis-2 caad) with a sulfate ion bound in the active site 60 d2bgxa2 not modelled 11.5 24 Fold:N-acetylmuramoyl-L-alanine amidase-like Superfamily:N-acetylmuramoyl-L-alanine amidase-like Family:N-acetylmuramoyl-L-alanine amidase-like 61 c2l9fA_ not modelled 11.3 14 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 62 d1vlba4 not modelled 10.9 11 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 63 d1w55a2 not modelled 10.9 3 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 64 c2pmpA_ not modelled 10.8 15 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana 65 d1o57a1 not modelled 10.3 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:N-terminal domain of Bacillus PurR 66 d1jmxa1 not modelled 10.3 25 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 67 c2oghA_ not modelled 10.2 20 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1; PDBTitle: solution structure of yeast eif1 68 c3re3B_ not modelled 10.0 18 PDB header:lyase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis 69 c3b6nA_ not modelled 9.9 15 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-2 cyclodiphosphate synthase pv003920 from plasmodium vivax 70 d1ee0a2 not modelled 9.8 0 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 71 d1v2da_ not modelled 9.5 28 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 72 d1gx1a_ not modelled 9.4 10 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 73 d1iv3a_ not modelled 9.3 15 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 74 d1kwaa_ not modelled 9.1 19 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 75 d1vh8a_ not modelled 8.9 10 Fold:Bacillus chorismate mutase-like Superfamily:IpsF-like Family:IpsF-like 76 c3n0kA_ not modelled 8.7 23 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:serine protease inhibitor 1; PDBTitle: proteinase inhibitor from coprinopsis cinerea 77 c3f0gA_ not modelled 8.6 8 PDB header:lyase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase; PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp 78 d2o8ra2 not modelled 8.6 7 Fold:PHP14-like Superfamily:PHP14-like Family:PPK middle domain-like 79 d1pbya1 not modelled 8.5 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 80 c2gzvA_ not modelled 8.5 10 PDB header:signaling protein Chain: A: PDB Molecule:prkca-binding protein; PDBTitle: the cystal structure of the pdz domain of human pick1 (casp target) 81 c3r1fO_ not modelled 8.5 20 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 82 d1p1da2 not modelled 8.4 17 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 83 c3hdoB_ not modelled 8.4 15 PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens 84 d1v5ma_ not modelled 8.2 26 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Pleckstrin-homology domain (PH domain) 85 c1vlbA_ not modelled 8.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a 86 d1wh5a_ not modelled 8.1 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 87 d1u2ca2 not modelled 8.0 8 Fold:Dystroglycan, domain 2 Superfamily:Dystroglycan, domain 2 Family:Dystroglycan, domain 2 88 c3i0oA_ not modelled 7.9 8 PDB header:transferase Chain: A: PDB Molecule:spectinomycin phosphotransferase; PDBTitle: crystal structure of spectinomycin phosphotransferase,2 aph(9)-ia, in complex with adp and spectinomcyin 89 d1okta2 not modelled 7.9 25 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 90 d1fg7a_ not modelled 7.9 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 91 c3cbfA_ not modelled 7.8 23 PDB header:transferase Chain: A: PDB Molecule:alpha-aminodipate aminotransferase; PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27 92 c3ftbA_ not modelled 7.8 16 PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum 93 c2eeiA_ not modelled 7.7 17 PDB header:metal binding protein Chain: A: PDB Molecule:pdz domain-containing protein 1; PDBTitle: solution structure of second pdz domain of pdz domain2 containing protein 1 94 d1dgja4 not modelled 7.7 4 Fold:Molybdenum cofactor-binding domain Superfamily:Molybdenum cofactor-binding domain Family:Molybdenum cofactor-binding domain 95 c2d92A_ not modelled 7.6 16 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the fifth pdz domain of inad-like2 protein 96 d1duga2 not modelled 7.6 0 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 97 c2y0fD_ not modelled 7.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27 98 d1glqa2 not modelled 7.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain 99 c1qysA_ not modelled 7.5 13 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0