Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	A	E	H	V	L	T	M	L	N	E	H	E	V	K	F	V	D	L	R	F	T	D	T	K	G	K	E	Q	H	V	T	I	P	A	H	Q	V	N	A	E	F	F	E	E	G	K	M	F	D	G	S	S	I	G	G	W	K	G
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	N	E	S	D	M	V	L	M	P	D	A	S	T	A	V	I	D	P	F	F	A	D	S	T	L	I	I	R	C	D	I	L	E	P	G	T	L	Q	G	Y	D	R	D	P	R	S	I	A	K	R	A	E	D	Y	L	R	S	T	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	A	D	T	V	L	F	G	P	E	P	E	F	F	L	F	D	D	I	R	F	G	S	S	I	S	G	S	H	V	A	I	D	D	I	E	G	A	W	N	S	S	T	Q	Y	E	G	G	N	K	G	H	R	P	A	V	K	G	G	Y
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	P	V	P	P	V	D	S	A	Q	D	I	R	S	E	M	C	L	V	M	E	Q	M	G	L	V	V	E	A	H	H	H	E	V	A	T	A	G	Q	N	E	V	A	T	R	F	N	T	M	T	K	K	A	D	E	I	Q	I	Y	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Y	V	V	H	N	V	A	H	R	F	G	K	T	A	T	F	M	P	K	P	M	F	G	D	N	G	S	G	M	H	C	H	M	S	L	S	K	N	G	V	N	L	F	A	G	D	K	Y	A	G	L	S	E	Q	A	L	Y	Y	I	G
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	V	I	K	H	A	K	A	I	N	A	L	A	N	P	T	T	N	S	Y	K	R	L	V	P	G	Y	E	A	P	V	M	L	A	Y	S	A	R	N	R	S	A	S	I	R	I	P	V	V	S	S	P	K	A	R	R	I	E	V	R
Secondary structure
SS confidence
Disorder																																																	?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		F	P	D	P	A	A	N	P	Y	L	C	F	A	A	L	L	M	A	G	L	D	G	I	K	N	K	I	H	P	G	E	A	M	D	K	N	L	Y	D	L	P	P	E	E	A	K	E	I	P	Q	V	A	G	S	L	E	E	A	L	N
Secondary structure
SS confidence
Disorder																																															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Sequence		E	L	D	L	D	R	E	F	L	K	A	G	G	V	F	T	D	E	A	I	D	A	Y	I	A	L	R	R	E	E	D	D	R	V	R	M	T	P	H	P	V	E	F	E	L	Y	Y	S	V
Secondary structure
SS confidence
Disorder																																																	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1fpy chain E Region: 2 - 469 Aligned: 468 Modelled: 468 Confidence: 100.0% Identity: 98% PDB header:ligase Chain: E: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from salmonella2 typhimurium with inhibitor phosphinothricin Phyre2 PDB 3ng0 chain A Region: 2 - 468 Aligned: 460 Modelled: 467 Confidence: 100.0% Identity: 56% PDB header:ligase Chain: A: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803 Phyre2 PDB 1hto chain B Region: 2 - 469 Aligned: 467 Modelled: 468 Confidence: 100.0% Identity: 52% PDB header:ligase Chain: B: PDB Molecule:glutamine synthetase; PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis Phyre2 PDB 2j9i chain L Region: 2 - 468 Aligned: 416 Modelled: 434 Confidence: 100.0% Identity: 28% PDB header:ligase Chain: L: PDB Molecule:glutamate-ammonia ligase domain-containing PDBTitle: lengsin is a survivor of an ancient family of class i2 glutamine synthetases in eukaryotes that has undergone3 evolutionary re-engineering for a tissue-specific role4 in the vertebrate eye lens. Phyre2 PDB 1f52 chain A domain 2 Region: 102 - 469 Aligned: 367 Modelled: 368 Confidence: 100.0% Identity: 97% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Glutamine synthetase catalytic domain Phyre2 PDB 2bvc chain A domain 2 Region: 103 - 469 Aligned: 366 Modelled: 367 Confidence: 100.0% Identity: 54% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Glutamine synthetase catalytic domain Phyre2 PDB 2qc8 chain J Region: 4 - 380 Aligned: 337 Modelled: 354 Confidence: 100.0% Identity: 26% PDB header:ligase Chain: J: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of human glutamine synthetase in complex with adp2 and methionine sulfoximine phosphate Phyre2 PDB 2d3a chain J Region: 3 - 380 Aligned: 339 Modelled: 356 Confidence: 100.0% Identity: 20% PDB header:ligase Chain: J: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate Phyre2 PDB 3fky chain D Region: 13 - 391 Aligned: 331 Modelled: 358 Confidence: 100.0% Identity: 22% PDB header:ligase Chain: D: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae Phyre2 PDB 3o6x chain C Region: 70 - 454 Aligned: 352 Modelled: 359 Confidence: 100.0% Identity: 23% PDB header:ligase Chain: C: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis Phyre2 PDB 1f52 chain A domain 1 Region: 2 - 101 Aligned: 100 Modelled: 100 Confidence: 99.9% Identity: 100% Fold: beta-Grasp (ubiquitin-like) Superfamily: Glutamine synthetase, N-terminal domain Family: Glutamine synthetase, N-terminal domain Phyre2 PDB 2bvc chain A domain 1 Region: 2 - 101 Aligned: 100 Modelled: 100 Confidence: 99.9% Identity: 45% Fold: beta-Grasp (ubiquitin-like) Superfamily: Glutamine synthetase, N-terminal domain Family: Glutamine synthetase, N-terminal domain Phyre2 PDB 1tt4 chain B Region: 122 - 392 Aligned: 204 Modelled: 214 Confidence: 99.0% Identity: 24% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cytoplasmic protein; PDBTitle: structure of np459575, a predicted glutathione synthase from2 salmonella typhimurium Phyre2 PDB 1tt4 chain A Region: 122 - 392 Aligned: 202 Modelled: 208 Confidence: 98.9% Identity: 23% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Glutamate-cysteine ligase family 2 (GCS2) Phyre2 PDB 1r8g chain A Region: 120 - 383 Aligned: 193 Modelled: 200 Confidence: 98.9% Identity: 24% Fold: Glutamine synthetase/guanido kinase Superfamily: Glutamine synthetase/guanido kinase Family: Glutamate-cysteine ligase family 2 (GCS2) Phyre2 PDB 2gwc chain E Region: 126 - 317 Aligned: 133 Modelled: 134 Confidence: 97.9% Identity: 17% PDB header:ligase Chain: E: PDB Molecule:glutamate cysteine ligase; PDBTitle: crystal structure of plant glutamate cysteine ligase in complex with a2 transition state analogue Phyre2 PDB 3ln7 chain A Region: 267 - 363 Aligned: 97 Modelled: 97 Confidence: 65.2% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida Phyre2 PDB 2p6y chain A Region: 185 - 283 Aligned: 75 Modelled: 75 Confidence: 39.3% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein vca0587; PDBTitle: x-ray structure of the protein q9km02_vibch from vibrio cholerae at2 the resolution 1.63 a. northeast structural genomics consortium3 target vcr80. Phyre2 PDB 1u8s chain A domain 2 Region: 192 - 258 Aligned: 64 Modelled: 67 Confidence: 27.5% Identity: 5% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 3ln6 chain A Region: 267 - 363 Aligned: 97 Modelled: 97 Confidence: 25.6% Identity: 15% PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 streptococcus agalactiae Phyre2 1 c1fpyE_ 2 c3ng0A_ 3 c1htoB_ 4 c2j9iL_ 5 d1f52a2 6 d2bvca2 7 c2qc8J_ 8 c2d3aJ_ 9 c3fkyD_ 10 c3o6xC_ 11 d1f52a1 12 d2bvca1 13 c1tt4B_ 14 d1tt4a_ 15 d1r8ga_ 16 c2gwcE_ 17 c3ln7A_ 18 c2p6yA_ 19 d1u8sa2 20 c3ln6A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1fpyE_ 100.0 98 PDB header:ligase Chain: E: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from salmonella2 typhimurium with inhibitor phosphinothricin 2 c3ng0A_ 100.0 56 PDB header:ligase Chain: A: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of glutamine synthetase from synechocystis sp. pcc2 6803 3 c1htoB_ 100.0 52 PDB header:ligase Chain: B: PDB Molecule:glutamine synthetase; PDBTitle: crystallographic structure of a relaxed glutamine synthetase from2 mycobacterium tuberculosis 4 c2j9iL_ 100.0 28 PDB header:ligase Chain: L: PDB Molecule:glutamate-ammonia ligase domain-containing PDBTitle: lengsin is a survivor of an ancient family of class i2 glutamine synthetases in eukaryotes that has undergone3 evolutionary re-engineering for a tissue-specific role4 in the vertebrate eye lens. 5 d1f52a2 100.0 97 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamine synthetase catalytic domain 6 d2bvca2 100.0 54 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamine synthetase catalytic domain 7 c2qc8J_ 100.0 26 PDB header:ligase Chain: J: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of human glutamine synthetase in complex with adp2 and methionine sulfoximine phosphate 8 c2d3aJ_ 100.0 20 PDB header:ligase Chain: J: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate 9 c3fkyD_ 100.0 22 PDB header:ligase Chain: D: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the glutamine synthetase gln1deltan182 from the yeast saccharomyces cerevisiae 10 c3o6xC_ 100.0 23 PDB header:ligase Chain: C: PDB Molecule:glutamine synthetase; PDBTitle: crystal structure of the type iii glutamine synthetase from2 bacteroides fragilis 11 d1f52a1 99.9 100 Fold:beta-Grasp (ubiquitin-like) Superfamily:Glutamine synthetase, N-terminal domain Family:Glutamine synthetase, N-terminal domain 12 d2bvca1 99.9 45 Fold:beta-Grasp (ubiquitin-like) Superfamily:Glutamine synthetase, N-terminal domain Family:Glutamine synthetase, N-terminal domain 13 c1tt4B_ 99.0 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative cytoplasmic protein; PDBTitle: structure of np459575, a predicted glutathione synthase from2 salmonella typhimurium 14 d1tt4a_ 98.9 23 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamate-cysteine ligase family 2 (GCS2) 15 d1r8ga_ 98.9 24 Fold:Glutamine synthetase/guanido kinase Superfamily:Glutamine synthetase/guanido kinase Family:Glutamate-cysteine ligase family 2 (GCS2) 16 c2gwcE_ 97.9 17 PDB header:ligase Chain: E: PDB Molecule:glutamate cysteine ligase; PDBTitle: crystal structure of plant glutamate cysteine ligase in complex with a2 transition state analogue 17 c3ln7A_ 65.2 16 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 pasteurella multocida 18 c2p6yA_ 39.3 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein vca0587; PDBTitle: x-ray structure of the protein q9km02_vibch from vibrio cholerae at2 the resolution 1.63 a. northeast structural genomics consortium3 target vcr80. 19 d1u8sa2 27.5 5 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 20 c3ln6A_ 25.6 15 PDB header:ligase Chain: A: PDB Molecule:glutathione biosynthesis bifunctional protein gshab; PDBTitle: crystal structure of a bifunctional glutathione synthetase from2 streptococcus agalactiae 21 c1a8pA_ not modelled 24.7 23 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii 22 c3it5B_ not modelled 24.6 36 PDB header:hydrolase Chain: B: PDB Molecule:protease lasa; PDBTitle: crystal structure of the lasa virulence factor from pseudomonas2 aeruginosa 23 d1prtb1 not modelled 20.3 13 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 24 c3hwuA_ not modelled 19.9 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of putative dna-binding protein (yp_299413.1) from2 ralstonia eutropha jmp134 at 1.30 a resolution 25 c3htnA_ not modelled 17.2 13 PDB header:metal binding protein Chain: A: PDB Molecule:putative dna binding protein; PDBTitle: crystal structure of a putative dna binding protein (bt_1116) from2 bacteroides thetaiotaomicron vpi-5482 at 1.50 a resolution 26 c2qw5B_ not modelled 16.9 20 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 27 d1xv2a_ not modelled 16.3 33 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:Alpha-acetolactate decarboxylase-like 28 c2z2vA_ not modelled 16.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii 29 d2z1ea1 not modelled 15.6 8 Fold:Bacillus chorismate mutase-like Superfamily:PurM N-terminal domain-like Family:PurM N-terminal domain-like 30 c2f59B_ not modelled 15.1 17 PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 31 d1z2la2 not modelled 13.6 8 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 32 c2gu1A_ not modelled 13.2 19 PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae 33 d1a8pa2 not modelled 13.1 23 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 34 d1ysja2 not modelled 12.8 18 Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain 35 c3r1kA_ not modelled 12.4 14 PDB header:transferase Chain: A: PDB Molecule:enhanced intracellular survival protein; PDBTitle: crystal structure of acetyltransferase eis from mycobacterium2 tuberculosis h37rv in complex with coa and an acetamide moiety 36 c1bcpH_ not modelled 11.8 13 PDB header:toxin Chain: H: PDB Molecule:pertussis toxin; PDBTitle: binary complex of pertussis toxin and atp 37 d2h6la1 not modelled 11.8 20 Fold:AF0104/ALDC/Ptd012-like Superfamily:AF0104/ALDC/Ptd012-like Family:AF0104-like 38 d1u8sa1 not modelled 11.6 8 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 39 c2dt4A_ not modelled 11.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph0802; PDBTitle: crystal structure of pyrococcus horikoshii a plant- and prokaryote-2 conserved (ppc) protein at 1.60 resolution 40 d1d4oa_ not modelled 11.0 25 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 41 c2jy5A_ not modelled 10.7 13 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 42 d1jqoa_ not modelled 10.7 20 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 43 c1jqoA_ not modelled 10.7 20 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 44 c1pt9B_ not modelled 10.4 25 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 45 d1c41a_ not modelled 10.2 7 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 46 c2hv2D_ not modelled 9.8 21 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of conserved protein of unknown function from2 enterococcus faecalis v583 at 2.4 a resolution, probable n-3 acyltransferase 47 c2bruC_ not modelled 9.8 28 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 48 d1pnoa_ not modelled 9.6 33 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 49 c2pebB_ not modelled 9.5 18 PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution 50 d1owxa_ not modelled 9.4 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 51 c3ixzB_ not modelled 9.3 13 PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 52 c3mpoD_ not modelled 9.2 13 PDB header:hydrolase Chain: D: PDB Molecule:predicted hydrolase of the had superfamily; PDBTitle: the crystal structure of a hydrolase from lactobacillus brevis 53 c2hsiB_ not modelled 9.2 31 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative peptidase m23; PDBTitle: crystal structure of putative peptidase m23 from2 pseudomonas aeruginosa, new york structural genomics3 consortium 54 d1zpva1 not modelled 8.8 7 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 55 c3hzrD_ not modelled 8.8 10 PDB header:ligase Chain: D: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica 56 c3zvkG_ not modelled 8.7 17 PDB header:antitoxin/toxin/dna Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb; PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter 57 c1u8sB_ not modelled 8.5 7 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 58 c3ke2A_ not modelled 8.5 38 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein yp_928783.1; PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution 59 d1nqua_ not modelled 8.3 11 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 60 c3fpkB_ not modelled 8.2 4 PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium 61 d1jjcb2 not modelled 8.2 22 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Domains B1 and B5 of PheRS-beta, PheT 62 d1ejba_ not modelled 8.2 14 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 63 c2btwA_ not modelled 8.0 22 PDB header:transferase Chain: A: PDB Molecule:alr0975 protein; PDBTitle: crystal structure of alr0975 64 c3mz2A_ not modelled 7.7 19 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphoryl diester phosphodiesterase2 (bdi_3922) from parabacteroides distasonis atcc 8503 at 1.55 a3 resolution 65 d1di0a_ not modelled 7.0 11 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 66 d1rvv1_ not modelled 7.0 11 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 67 d1e4ia_ not modelled 7.0 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 68 c2kjwA_ not modelled 6.9 17 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s6; PDBTitle: solution structure and backbone dynamics of the permutant2 p54-55 69 d2hq9a1 not modelled 6.8 23 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 70 d1aq0a_ not modelled 6.7 21 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 71 c3bzjA_ not modelled 6.7 9 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 72 c2vxeA_ not modelled 6.6 21 PDB header:transcription Chain: A: PDB Molecule:cg10686-pa; PDBTitle: solution structure of the lsm domain of drosophila2 melanogaster tral (trailer hitch) 73 d2hv2a2 not modelled 6.5 21 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:EF1021-like 74 c2eq7C_ not modelled 6.4 14 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 75 d1prtc1 not modelled 6.4 20 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Bacterial AB5 toxins, B-subunits 76 d2cyua1 not modelled 6.3 10 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 77 d1m5wa_ not modelled 6.3 17 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 78 c2obxH_ not modelled 6.1 19 PDB header:transferase Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 79 c2nyiB_ not modelled 6.0 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 80 c3b8eB_ not modelled 6.0 17 PDB header:hydrolase/transport protein Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 81 c3gk0H_ not modelled 5.9 12 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 82 c3tr3A_ not modelled 5.9 5 PDB header:unknown function Chain: A: PDB Molecule:bola; PDBTitle: structure of a bola protein homologue from coxiella burnetii 83 c3dcgF_ not modelled 5.8 63 PDB header:ligase/viral protein Chain: F: PDB Molecule:virion infectivity factor; PDBTitle: crystal structure of the hiv vif bc-box in complex with human elonginb2 and elonginc 84 c3n7zD_ not modelled 5.7 10 PDB header:transferase Chain: D: PDB Molecule:acetyltransferase, gnat family; PDBTitle: crystal structure of acetyltransferase from bacillus anthracis 85 c2k6xA_ not modelled 5.5 12 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 86 d2cyga1 not modelled 5.4 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 87 d1gvha3 not modelled 5.4 16 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 88 c2k4vA_ not modelled 5.4 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1076; PDBTitle: solution structure of uncharacterized protein pa1076 from2 pseudomonas aeruginosa. northeast structural genomics3 consortium (nesg) target pat3, ontario center for4 structural proteomics target pa1076 . 89 d1t3ba2 not modelled 5.4 7 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 90 d2bu3a1 not modelled 5.4 22 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Phytochelatin synthase 91 c2ig6B_ not modelled 5.3 14 PDB header:oxidoreductase Chain: B: PDB Molecule:nimc/nima family protein; PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution 92 d1wzca1 not modelled 5.3 23 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 93 d2i00a2 not modelled 5.3 14 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:EF1021-like 94 d1ug6a_ not modelled 5.2 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 95 d1wmxb_ not modelled 5.2 50 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 30 carbohydrate binding module, CBM30 (PKD repeat) 96 d2c0ra1 not modelled 5.2 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 97 d1eeja2 not modelled 5.2 19 Fold:Cystatin-like Superfamily:DsbC/DsbG N-terminal domain-like Family:DsbC/DsbG N-terminal domain-like 98 c1xs3A_ not modelled 5.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein xc975; PDBTitle: solution structure analysis of the xc975 protein 99 d1jqna_ not modelled 5.1 13 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0