Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	F	T	V	E	R	E	H	L	L	K	P	L	Q	Q	V	S	G	P	L	G	G	R	P	T	L	P	I	L	G	N	L	L	L	Q	V	A	D	G	T	L	S	L	T	G	T	D	L	E	M	E	M	V	A	R	V	A	L	V
Secondary structure
SS confidence
Disorder		?					?															?	?			?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	P	H	E	P	G	A	T	T	V	P	A	R	K	F	F	D	I	C	R	G	L	P	E	G	A	E	I	A	V	Q	L	E	G	E	R	M	L	V	R	S	G	R	S	R	F	S	L	S	T	L	P	A	A	D	F	P	N	L	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	W	Q	S	E	V	E	F	T	L	P	Q	A	T	M	K	R	L	I	E	A	T	Q	F	S	M	A	H	Q	D	V	R	Y	Y	L	N	G	M	L	F	E	T	E	G	E	E	L	R	T	V	A	T	D	G	H	R	L	A	V	C
Secondary structure
SS confidence
Disorder					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	M	P	I	G	Q	S	L	P	S	H	S	V	I	V	P	R	K	G	V	I	E	L	M	R	M	L	D	G	G	D	N	P	L	R	V	Q	I	G	S	N	N	I	R	A	H	V	G	D	F	I	F	T	S	K	L	V	D	G	R
Secondary structure
SS confidence
Disorder					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	P	D	Y	R	R	V	L	P	K	N	P	D	K	H	L	E	A	G	C	D	L	L	K	Q	A	F	A	R	A	A	I	L	S	N	E	K	F	R	G	V	R	L	Y	V	S	E	N	Q	L	K	I	T	A	N	N	P	E	Q	E
Secondary structure
SS confidence
Disorder																																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	A	E	E	I	L	D	V	T	Y	S	G	A	E	M	E	I	G	F	N	V	S	Y	V	L	D	V	L	N	A	L	K	C	E	N	V	R	M	M	L	T	D	S	V	S	S	V	Q	I	E	D	A	A	S	Q	S	A	A	Y	V
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.
Sequence		V	M	P	M	R	L
Secondary structure
SS confidence
Disorder			?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1unn chain A Region: 1 - 366 Aligned: 366 Modelled: 366 Confidence: 100.0% Identity: 100% PDB header:beta-clamp Chain: A: PDB Molecule:dna polymerase iii beta subunit; PDBTitle: complex of beta-clamp processivity factor and little finger2 domain of poliv Phyre2 PDB 1vpk chain A Region: 1 - 366 Aligned: 364 Modelled: 366 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii, beta subunit; PDBTitle: crystal structure of dna polymerase iii, beta subunit (tm0262) from2 thermotoga maritima at 2.00 a resolution Phyre2 PDB 2awa chain B Region: 1 - 365 Aligned: 364 Modelled: 365 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii, beta chain; PDBTitle: crystal structure of dna polymerase iii, beta chain (ec 2.7.7.7)2 (np_344555.1) from streptococcus pneumoniae tigr4 at 2.50 a3 resolution Phyre2 PDB 3p16 chain A Region: 1 - 366 Aligned: 361 Modelled: 366 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii subunit beta; PDBTitle: crystal structure of dna polymerase iii sliding clamp Phyre2 PDB 3t0p chain B Region: 1 - 366 Aligned: 364 Modelled: 365 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii, beta subunit; PDBTitle: crystal structure of a putative dna polymerase iii beta subunit2 (eubrec_0002; ere_29750) from eubacterium rectale atcc 33656 at 2.263 a resolution Phyre2 PDB 1ok7 chain A domain 3 Region: 245 - 366 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 100% Fold: DNA clamp Superfamily: DNA clamp Family: DNA polymerase III, beta subunit Phyre2 PDB 1vpk chain A domain 3 Region: 245 - 366 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 25% Fold: DNA clamp Superfamily: DNA clamp Family: DNA polymerase III, beta subunit Phyre2 PDB 1rwz chain A Region: 126 - 363 Aligned: 223 Modelled: 238 Confidence: 100.0% Identity: 14% PDB header:replication Chain: A: PDB Molecule:dna polymerase sliding clamp; PDBTitle: crystal structure of proliferating cell nuclear antigen (pcna) from a.2 fulgidus Phyre2 PDB 3hi8 chain C Region: 129 - 363 Aligned: 221 Modelled: 235 Confidence: 100.0% Identity: 15% PDB header:replication Chain: C: PDB Molecule:proliferating cell nuclear antigen pcna; PDBTitle: crystal structure of proliferating cell nuclear antigen2 (pcna) from haloferax volcanii Phyre2 PDB 2ix2 chain B Region: 131 - 363 Aligned: 217 Modelled: 224 Confidence: 100.0% Identity: 12% PDB header:replication Chain: B: PDB Molecule:dna polymerase sliding clamp c; PDBTitle: crystal structure of the heterotrimeric pcna from2 sulfolobus solfataricus Phyre2 PDB 3p91 chain A Region: 131 - 363 Aligned: 219 Modelled: 233 Confidence: 100.0% Identity: 12% PDB header:dna binding protein Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of proliferating cellular nuclear antigen from2 entamoeba histolytica Phyre2 PDB 2zvw chain H Region: 131 - 363 Aligned: 222 Modelled: 233 Confidence: 100.0% Identity: 15% PDB header:dna binding protein Chain: H: PDB Molecule:proliferating cell nuclear antigen 2; PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21 Phyre2 PDB 1ok7 chain A domain 1 Region: 1 - 122 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 100% Fold: DNA clamp Superfamily: DNA clamp Family: DNA polymerase III, beta subunit Phyre2 PDB 1ok7 chain A domain 2 Region: 123 - 244 Aligned: 122 Modelled: 122 Confidence: 100.0% Identity: 100% Fold: DNA clamp Superfamily: DNA clamp Family: DNA polymerase III, beta subunit Phyre2 PDB 1vpk chain A domain 2 Region: 123 - 244 Aligned: 121 Modelled: 122 Confidence: 100.0% Identity: 26% Fold: DNA clamp Superfamily: DNA clamp Family: DNA polymerase III, beta subunit Phyre2 PDB 3aiz chain D Region: 131 - 363 Aligned: 218 Modelled: 233 Confidence: 100.0% Identity: 12% PDB header:replication Chain: D: PDB Molecule:dna polymerase sliding clamp c; PDBTitle: crystal structure of pcna2-pcna3 complex from sulfolobus tokodaii2 (p21212) Phyre2 PDB 1ge8 chain A Region: 131 - 363 Aligned: 212 Modelled: 233 Confidence: 100.0% Identity: 18% PDB header:dna binding protein Chain: A: PDB Molecule:proliferation cell nuclear antigen; PDBTitle: proliferating cell nuclear antigen (pcna) homolog from2 pyrococcus furiosus Phyre2 PDB 2zvk chain C Region: 131 - 363 Aligned: 216 Modelled: 233 Confidence: 100.0% Identity: 12% PDB header:transferase Chain: C: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of pcna in complex with dna polymerase eta fragment Phyre2 PDB 1vpk chain A domain 1 Region: 1 - 121 Aligned: 120 Modelled: 121 Confidence: 100.0% Identity: 29% Fold: DNA clamp Superfamily: DNA clamp Family: DNA polymerase III, beta subunit Phyre2 PDB 3lx2 chain A Region: 131 - 363 Aligned: 218 Modelled: 233 Confidence: 100.0% Identity: 15% PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase sliding clamp 2; PDBTitle: crystal structure analysis of pcna from thermococcus kodakaraensis2 tk0582 Phyre2 1 c1unnA_ 2 c1vpkA_ 3 c2awaB_ 4 c3p16A_ 5 c3t0pB_ 6 d1ok7a3 7 d1vpka3 8 c1rwzA_ 9 c3hi8C_ 10 c2ix2B_ 11 c3p91A_ 12 c2zvwH_ 13 d1ok7a1 14 d1ok7a2 15 d1vpka2 16 c3aizD_ 17 c1ge8A_ 18 c2zvkC_ 19 d1vpka1 20 c3lx2A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1unnA_ 100.0 100 PDB header:beta-clamp Chain: A: PDB Molecule:dna polymerase iii beta subunit; PDBTitle: complex of beta-clamp processivity factor and little finger2 domain of poliv 2 c1vpkA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii, beta subunit; PDBTitle: crystal structure of dna polymerase iii, beta subunit (tm0262) from2 thermotoga maritima at 2.00 a resolution 3 c2awaB_ 100.0 22 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii, beta chain; PDBTitle: crystal structure of dna polymerase iii, beta chain (ec 2.7.7.7)2 (np_344555.1) from streptococcus pneumoniae tigr4 at 2.50 a3 resolution 4 c3p16A_ 100.0 30 PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii subunit beta; PDBTitle: crystal structure of dna polymerase iii sliding clamp 5 c3t0pB_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii, beta subunit; PDBTitle: crystal structure of a putative dna polymerase iii beta subunit2 (eubrec_0002; ere_29750) from eubacterium rectale atcc 33656 at 2.263 a resolution 6 d1ok7a3 100.0 100 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 7 d1vpka3 100.0 25 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 8 c1rwzA_ 100.0 14 PDB header:replication Chain: A: PDB Molecule:dna polymerase sliding clamp; PDBTitle: crystal structure of proliferating cell nuclear antigen (pcna) from a.2 fulgidus 9 c3hi8C_ 100.0 15 PDB header:replication Chain: C: PDB Molecule:proliferating cell nuclear antigen pcna; PDBTitle: crystal structure of proliferating cell nuclear antigen2 (pcna) from haloferax volcanii 10 c2ix2B_ 100.0 12 PDB header:replication Chain: B: PDB Molecule:dna polymerase sliding clamp c; PDBTitle: crystal structure of the heterotrimeric pcna from2 sulfolobus solfataricus 11 c3p91A_ 100.0 12 PDB header:dna binding protein Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of proliferating cellular nuclear antigen from2 entamoeba histolytica 12 c2zvwH_ 100.0 15 PDB header:dna binding protein Chain: H: PDB Molecule:proliferating cell nuclear antigen 2; PDBTitle: crystal structure of proliferating cell nuclear antigen 22 and short peptide from human p21 13 d1ok7a1 100.0 100 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 14 d1ok7a2 100.0 100 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 15 d1vpka2 100.0 26 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 16 c3aizD_ 100.0 12 PDB header:replication Chain: D: PDB Molecule:dna polymerase sliding clamp c; PDBTitle: crystal structure of pcna2-pcna3 complex from sulfolobus tokodaii2 (p21212) 17 c1ge8A_ 100.0 18 PDB header:dna binding protein Chain: A: PDB Molecule:proliferation cell nuclear antigen; PDBTitle: proliferating cell nuclear antigen (pcna) homolog from2 pyrococcus furiosus 18 c2zvkC_ 100.0 12 PDB header:transferase Chain: C: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of pcna in complex with dna polymerase eta fragment 19 d1vpka1 100.0 29 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase III, beta subunit 20 c3lx2A_ 100.0 15 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase sliding clamp 2; PDBTitle: crystal structure analysis of pcna from thermococcus kodakaraensis2 tk0582 21 c2ijxA_ not modelled 100.0 14 PDB header:dna binding protein Chain: A: PDB Molecule:dna polymerase sliding clamp a; PDBTitle: crystal structure of pcna3 monomer from sulfolobus solfataricus. 22 c2od8A_ not modelled 99.9 14 PDB header:protein binding Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: structure of a peptide derived from cdc9 bound to pcna 23 c3k4xA_ not modelled 99.8 17 PDB header:dna binding protein/dna Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: eukaryotic sliding clamp pcna bound to dna 24 c1ud9C_ not modelled 99.8 16 PDB header:dna binding protein Chain: C: PDB Molecule:dna polymerase sliding clamp a; PDBTitle: crystal structure of proliferating cell nuclear antigen (pcna) homolog2 from sulfolobus tokodaii 25 c3aizB_ not modelled 99.7 9 PDB header:replication Chain: B: PDB Molecule:dna polymerase sliding clamp b; PDBTitle: crystal structure of pcna2-pcna3 complex from sulfolobus tokodaii2 (p21212) 26 c3g65A_ not modelled 99.5 11 PDB header:cell cycle Chain: A: PDB Molecule:cell cycle checkpoint control protein rad9a; PDBTitle: crystal structure of the human rad9-rad1-hus1 dna damage2 checkpoint complex 27 c1sxjF_ not modelled 99.4 16 PDB header:replication Chain: F: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) 28 c2ix2A_ not modelled 99.1 12 PDB header:replication Chain: A: PDB Molecule:dna polymerase sliding clamp b; PDBTitle: crystal structure of the heterotrimeric pcna from2 sulfolobus solfataricus 29 c3g65B_ not modelled 98.9 10 PDB header:cell cycle Chain: B: PDB Molecule:cell cycle checkpoint protein rad1; PDBTitle: crystal structure of the human rad9-rad1-hus1 dna damage2 checkpoint complex 30 c3ggrA_ not modelled 98.8 12 PDB header:cell cycle Chain: A: PDB Molecule:cell cycle checkpoint control protein rad9a; PDBTitle: crystal structure of the human rad9-hus1-rad1 complex 31 d1u7ba2 not modelled 98.6 14 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 32 d1iz5a2 not modelled 98.5 22 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 33 d1plqa2 not modelled 98.5 16 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 34 d1rwza2 not modelled 98.4 17 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 35 d1ud9a2 not modelled 98.1 19 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 36 c3l0wA_ not modelled 97.9 13 PDB header:replication Chain: A: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: structure of split monoubiquitinated pcna with ubiquitin in2 position two 37 d1rwza1 not modelled 97.6 12 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 38 d1iz5a1 not modelled 97.5 11 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 39 c1b8hA_ not modelled 96.8 9 PDB header:transferase Chain: A: PDB Molecule:dna polymerase processivity component; PDBTitle: sliding clamp, dna polymerase 40 d1ud9a1 not modelled 96.1 11 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 41 d1u7ba1 not modelled 95.1 13 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 42 d1plqa1 not modelled 94.9 11 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 43 c3pgeA_ not modelled 94.8 18 PDB header:dna binding protein Chain: A: PDB Molecule:sumo-modified proliferating cell nuclear antigen; PDBTitle: structure of sumoylated pcna 44 c3l0xB_ not modelled 93.9 18 PDB header:replication Chain: B: PDB Molecule:proliferating cell nuclear antigen; PDBTitle: structure of split yeast pcna 45 c3ggrB_ not modelled 91.3 12 PDB header:cell cycle Chain: B: PDB Molecule:checkpoint protein hus1; PDBTitle: crystal structure of the human rad9-hus1-rad1 complex 46 c2obkE_ not modelled 80.6 15 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain; PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6. 47 d2fa8a1 not modelled 76.2 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 48 c2p0gB_ not modelled 70.7 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75 49 d1czda1 not modelled 64.4 17 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 50 c2ojlB_ not modelled 57.5 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 51 d1b77a1 not modelled 45.8 15 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 52 c3l0wB_ not modelled 45.1 12 PDB header:replication Chain: B: PDB Molecule:monoubiquitinated proliferating cell nuclear PDBTitle: structure of split monoubiquitinated pcna with ubiquitin in2 position two 53 c2npbA_ not modelled 21.4 15 PDB header:oxidoreductase Chain: A: PDB Molecule:selenoprotein w; PDBTitle: nmr solution structure of mouse selw 54 d1usha1 not modelled 21.2 8 Fold:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain Superfamily:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain Family:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 55 c3dexA_ not modelled 19.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. 56 c1oidA_ not modelled 17.4 11 PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) 57 c2zf9D_ not modelled 12.8 15 PDB header:structural protein Chain: D: PDB Molecule:scae cell-surface anchored scaffoldin protein; PDBTitle: crystal structure of a type iii cohesin module from the cellulosomal2 scae cell-surface anchoring scaffoldin of ruminococcus flavefaciens 58 d1vqoe2 not modelled 11.8 24 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 59 d2dkya1 not modelled 10.9 21 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:Variant SAM domain 60 c3qyhG_ not modelled 8.6 29 PDB header:lyase Chain: G: PDB Molecule:co-type nitrile hydratase alpha subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-h71l from2 pseudomonas putida. 61 c2pjzA_ not modelled 7.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st1066; PDBTitle: the crystal structure of putative cobalt transport atp-2 binding protein (cbio-2), st1066 62 d1iwma_ not modelled 7.7 10 Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors Family:Outer membrane lipoprotein receptor LolB 63 c2dxbR_ not modelled 7.0 43 PDB header:hydrolase Chain: R: PDB Molecule:thiocyanate hydrolase subunit gamma; PDBTitle: recombinant thiocyanate hydrolase comprising partially-modified cobalt2 centers 64 d1v29a_ not modelled 6.7 29 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 65 d1b77a2 not modelled 6.7 8 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 66 d1czda2 not modelled 6.2 11 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0