PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1sxjF_

Fold library id	PDB Header	Molecule	Title
c1sxjF_	PDB header: replication	Chain: F: PDB Molecule: proliferating cell nuclear antigen;	PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)

Links to external resources
Added to library: Tue Mar 16 13:37:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A S X L E A K F E E A S L F K R I I D G F K D C V Q L V N F Q C K E D G I I A Q A V D D S R V L L V S L E I G V E A F Q E Y R C D H P V T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
T T S S G G G
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G X D L T S L S K I L R C G N N T D T L T L I A D N T P D S I I L L F E D T K K D R I A E Y S L K L X D I D A D F L K I E E L Q Y D S T L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S S
S
S S S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P S S E F S K I V R D L S Q L S D S I N I X I T K E T I K F V A D G D I G S G S V I I K P F V D X E H P E T S I K L E X D Q P V D L T F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T
S S
T T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence A K Y L L D I I K G S S L S D R V G I R L S S E A P A L F Q F D L K S G F L Q F F L A P K F N D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G T
S
T T S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	S	X	L	E	A	K	F	E	E	A	S	L	F	K	R	I	I	D	G	F	K	D	C	V	Q	L	V	N	F	Q	C	K	E	D	G	I	I	A	Q	A	V	D	D	S	R	V	L	L	V	S	L	E	I	G	V	E	A	F	Q	E	Y	R	C	D	H	P	V	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						S		T	T																						S	S									T	T	S	S									G	G	G							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	X	D	L	T	S	L	S	K	I	L	R	C	G	N	N	T	D	T	L	T	L	I	A	D	N	T	P	D	S	I	I	L	L	F	E	D	T	K	K	D	R	I	A	E	Y	S	L	K	L	X	D	I	D	A	D	F	L	K	I	E	E	L	Q	Y	D	S	T	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S			T	T									S	S		S									S	S	S														S												S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	S	S	E	F	S	K	I	V	R	D	L	S	Q	L	S	D	S	I	N	I	X	I	T	K	E	T	I	K	F	V	A	D	G	D	I	G	S	G	S	V	I	I	K	P	F	V	D	X	E	H	P	E	T	S	I	K	L	E	X	D	Q	P	V	D	L	T	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T		S								T	T									S	S													T	T											S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	A	K	Y	L	L	D	I	I	K	G	S	S	L	S	D	R	V	G	I	R	L	S	S	E	A	P	A	L	F	Q	F	D	L	K	S	G	F	L	Q	F	F	L	A	P	K	F	N	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	G	G	G	T		S								T	T	S									T	T