PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1ud9C_

Fold library id	PDB Header	Molecule	Title
c1ud9C_	PDB header: dna binding protein	Chain: C: PDB Molecule: dna polymerase sliding clamp a;	PDBTitle: crystal structure of proliferating cell nuclear antigen2 (pcna) homolog from sulfolobus tokodaii

Links to external resources
Added to library: Tue Mar 16 13:11:14 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A H I V Y D D V R D L K A I I Q A L L K L V D E A L F D I K P E G I Q L V A I D K A H I S L I K I E L P K E M F K E Y D V P E E F K F G F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
S T T
T T S S G G G S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T Q Y M S K L L K A A K R K E E I I I D A D S P E V V K L T L S G A L N R V F N V N N I E V L P P L E F D I K A T I N A S G L K N A I G E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
T T G G G T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A E V A D T L L I S G N E E K V V V K G E G E N K V E V E F S K D T G S L A D I E F N K E S S S A Y D V E Y L N D I I S L T K L S D Y V K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S S S
T T T T
S S
T G G G G G G
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence A F A D Q K P M Q L E F N M E G G G K V T Y L L A P K L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	H	I	V	Y	D	D	V	R	D	L	K	A	I	I	Q	A	L	L	K	L	V	D	E	A	L	F	D	I	K	P	E	G	I	Q	L	V	A	I	D	K	A	H	I	S	L	I	K	I	E	L	P	K	E	M	F	K	E	Y	D	V	P	E	E	F	K	F	G	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S													T	T	T		S								T	T									T	T	S	S									G	G	G	S	S					S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	Q	Y	M	S	K	L	L	K	A	A	K	R	K	E	E	I	I	I	D	A	D	S	P	E	V	V	K	L	T	L	S	G	A	L	N	R	V	F	N	V	N	N	I	E	V	L	P	P	L	E	F	D	I	K	A	T	I	N	A	S	G	L	K	N	A	I	G	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T			S											T	T							G	G	G	T	T																	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	E	V	A	D	T	L	L	I	S	G	N	E	E	K	V	V	V	K	G	E	G	E	N	K	V	E	V	E	F	S	K	D	T	G	S	L	A	D	I	E	F	N	K	E	S	S	S	A	Y	D	V	E	Y	L	N	D	I	I	S	L	T	K	L	S	D	Y	V	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S								S	S							S	S	S	S								T	T	T	T								S	S														T	G	G	G	G	G	G		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	A	F	A	D	Q	K	P	M	Q	L	E	F	N	M	E	G	G	G	K	V	T	Y	L	L	A	P	K	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S									G	G	G