PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1vpkA_

Fold library id	PDB Header	Molecule	Title
c1vpkA_	PDB header: transferase	Chain: A: PDB Molecule: dna polymerase iii, beta subunit;	PDBTitle: crystal structure of dna polymerase iii, beta subunit2 (tm0262) from thermotoga maritima at 2.00 a resolution

Links to external resources
Added to library: Tue Mar 16 13:31:11 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H M K V T V T T L E L K D K I T I A S K A L A K K S V K P I L A G F L F E V K D G N F Y I C A T D L E T G V K A T V N A A E I S G E A R F V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S S S
G G G G T T
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V P G D V I Q K M V K V L P D E I T E L S L E G D A L V I S S G S T V F R I T T M P A D E F P E I T P A E S G I T F E V D T S L L E E M V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S T T T T
B
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K V I F A A A K D E F M R N L N G V F W E L H K N L L R L V A S D G F R L A L A E E Q I E N E E E A S F L L S L K S M K E V Q N V L D N T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S
T T
T T T S T T
S S
S
T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E P T I T V R Y D G R R V S L S T N D V E T V M R V V D A E F P D Y K R V I P E T F K T K V V V S R K E L R E S L K R V M V I A S K G S E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S S
S S
G G G G S
S
S T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence V K F E I E E N V M R L V S K S P D Y G E V V D E V E V Q K E G E D L V I A F N P K F I E D V L K H I E T E E I E M N F V D S T S P C Q I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T
S S S
T T S

. . . . . . . . . 360 . . . . . . .

Sequence P L D I S G Y L Y I V M P I R L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	M	K	V	T	V	T	T	L	E	L	K	D	K	I	T	I	A	S	K	A	L	A	K	K	S	V	K	P	I	L	A	G	F	L	F	E	V	K	D	G	N	F	Y	I	C	A	T	D	L	E	T	G	V	K	A	T	V	N	A	A	E	I	S	G	E	A	R	F	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			G	G	G				S	S	S		G	G	G	G								T	T									S	S										S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	P	G	D	V	I	Q	K	M	V	K	V	L	P	D	E	I	T	E	L	S	L	E	G	D	A	L	V	I	S	S	G	S	T	V	F	R	I	T	T	M	P	A	D	E	F	P	E	I	T	P	A	E	S	G	I	T	F	E	V	D	T	S	L	L	E	E	M	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T			S	S								T	T							T	T								B			T	T	S								S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	V	I	F	A	A	A	K	D	E	F	M	R	N	L	N	G	V	F	W	E	L	H	K	N	L	L	R	L	V	A	S	D	G	F	R	L	A	L	A	E	E	Q	I	E	N	E	E	E	A	S	F	L	L	S	L	K	S	M	K	E	V	Q	N	V	L	D	N	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	S				T	T		T	T	T	S								T	T									S	S													S																				T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	P	T	I	T	V	R	Y	D	G	R	R	V	S	L	S	T	N	D	V	E	T	V	M	R	V	V	D	A	E	F	P	D	Y	K	R	V	I	P	E	T	F	K	T	K	V	V	V	S	R	K	E	L	R	E	S	L	K	R	V	M	V	I	A	S	K	G	S	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S								S	S							S	S									S	S					G	G	G	G	S		S			S																						T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	V	K	F	E	I	E	E	N	V	M	R	L	V	S	K	S	P	D	Y	G	E	V	V	D	E	V	E	V	Q	K	E	G	E	D	L	V	I	A	F	N	P	K	F	I	E	D	V	L	K	H	I	E	T	E	E	I	E	M	N	F	V	D	S	T	S	P	C	Q	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S									T	T	T																																		S	S							S		T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Sequence	P	L	D	I	S	G	Y	L	Y	I	V	M	P	I	R	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S								B