PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3p16A_

Fold library id	PDB Header	Molecule	Title
c3p16A_	PDB header: transferase	Chain: A: PDB Molecule: dna polymerase iii subunit beta;	PDBTitle: crystal structure of dna polymerase iii sliding clamp

Links to external resources
Added to library: Sat Aug 27 09:58:43 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D L T F R L L R E S F A D A V S W V A K N L P A R P A V P V L S G V L L T G S D N G L T I S G F D Y E V S A E A Q V G A E I V S P G S V L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S
S S G G G S
S S
S S
S B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S G R L L S D I T R A L P N K P V D V H V E G N R V A L T C G N A R F S L P T M P V E D Y P T L P T L P E E T G L L P A E L F A E A I S Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S T T B T T B
T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A I A A G R D D T L P M L T G I R V E I L G E T V V L A A T D R F R L A V R E L K W S A S S P D I E A A V L V P A K T L A E A A K A G I G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S S
S
T T
S S
B
S S S S
T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S D V R L S L G T G P G V G K D G L L G I S G N G K R S T T R L L D A E F P K F R Q L L P T E H T A V A T M D V A E L I E A I K L V A L V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S S S
S S
S S
S S
G G G T
S S
S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence D R G A Q V R M E F A D G S V R L S A G A D D V G R A E E D L V V D Y A G E P L T I A F N P T Y L T D G L S S L R S E R V S F G F T T A G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S S
S
S
S S S
T T S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . .

Sequence P A L L R P V S G D A V S T D Y V Y L L M P V R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	L	T	F	R	L	L	R	E	S	F	A	D	A	V	S	W	V	A	K	N	L	P	A	R	P	A	V	P	V	L	S	G	V	L	L	T	G	S	D	N	G	L	T	I	S	G	F	D	Y	E	V	S	A	E	A	Q	V	G	A	E	I	V	S	P	G	S	V	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T	S	S		S			S	S	G	G	G	S								S	S									S	S												S	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	G	R	L	L	S	D	I	T	R	A	L	P	N	K	P	V	D	V	H	V	E	G	N	R	V	A	L	T	C	G	N	A	R	F	S	L	P	T	M	P	V	E	D	Y	P	T	L	P	T	L	P	E	E	T	G	L	L	P	A	E	L	F	A	E	A	I	S	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		S	S								T	T						B	T	T	B									T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	I	A	A	G	R	D	D	T	L	P	M	L	T	G	I	R	V	E	I	L	G	E	T	V	V	L	A	A	T	D	R	F	R	L	A	V	R	E	L	K	W	S	A	S	S	P	D	I	E	A	A	V	L	V	P	A	K	T	L	A	E	A	A	K	A	G	I	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S			S	S	S				S									T	T									S	S										B		S	S	S	S																		T			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	D	V	R	L	S	L	G	T	G	P	G	V	G	K	D	G	L	L	G	I	S	G	N	G	K	R	S	T	T	R	L	L	D	A	E	F	P	K	F	R	Q	L	L	P	T	E	H	T	A	V	A	T	M	D	V	A	E	L	I	E	A	I	K	L	V	A	L	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						S		S	S	S	S			S	S								S	S									S	S					G	G	G	T			S	S		S																			T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	D	R	G	A	Q	V	R	M	E	F	A	D	G	S	V	R	L	S	A	G	A	D	D	V	G	R	A	E	E	D	L	V	V	D	Y	A	G	E	P	L	T	I	A	F	N	P	T	Y	L	T	D	G	L	S	S	L	R	S	E	R	V	S	F	G	F	T	T	A	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S									T	T									S	S	S														S																		S		S	S							S		T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence	P	A	L	L	R	P	V	S	G	D	A	V	S	T	D	Y	V	Y	L	L	M	P	V	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S	S								B