Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	I	T	P	F	P	T	L	S	P	A	T	I	D	A	I	N	V	I	G	Q	W	L	A	Q	D	D	F	S	G	E	V	P	Y	Q	A	D	C	V	I	L	A	G	N	A	V	M	P	T	I	D	A	A	C	K	I	A	R	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	Q	I	P	L	L	I	S	G	G	I	G	H	S	T	T	F	L	Y	S	A	I	A	Q	H	P	H	Y	N	T	I	R	T	T	G	R	A	E	A	T	I	L	A	D	I	A	H	Q	F	W	H	I	P	H	E	K	I	W	I	E
Secondary structure
SS confidence
Disorder																	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	Q	S	T	N	C	G	E	N	A	R	F	S	I	A	L	L	N	Q	A	V	E	R	V	H	T	A	I	V	V	Q	D	P	T	M	Q	R	R	T	M	A	T	F	R	R	M	T	G	D	N	P	D	A	P	R	W	L	S	Y	P
Secondary structure
SS confidence
Disorder																					?																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	F	V	P	Q	L	G	N	N	A	D	S	V	I	F	I	N	Q	L	Q	G	L	W	P	V	E	R	Y	L	S	L	L	T	G	E	L	P	R	L	R	D	D	S	D	G	Y	G	P	R	G	R	D	F	I	V	H	V	D	F	P
Secondary structure
SS confidence
Disorder							?	?	?	?	?																																			?		?		?	?	?		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Sequence		A	E	V	I	H	A	W	Q	T	L	K	H	D	A	V	L	I	E	A	M	E	S	R	S	L	R
Secondary structure
SS confidence
Disorder																							?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ca8 chain B Region: 5 - 263 Aligned: 259 Modelled: 259 Confidence: 100.0% Identity: 100% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme Phyre2 PDB 2q8n chain B Region: 2 - 153 Aligned: 116 Modelled: 127 Confidence: 86.7% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution Phyre2 PDB 3k13 chain A Region: 42 - 139 Aligned: 77 Modelled: 76 Confidence: 58.6% Identity: 9% PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron Phyre2 PDB 1i5e chain A Region: 111 - 170 Aligned: 57 Modelled: 60 Confidence: 56.2% Identity: 12% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 3dmp chain D Region: 112 - 170 Aligned: 58 Modelled: 59 Confidence: 54.5% Identity: 12% PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei Phyre2 PDB 1zzg chain B Region: 35 - 153 Aligned: 92 Modelled: 93 Confidence: 53.8% Identity: 14% PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 Phyre2 PDB 1iat chain A Region: 12 - 153 Aligned: 115 Modelled: 116 Confidence: 51.7% Identity: 17% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 2h9a chain B Region: 37 - 139 Aligned: 79 Modelled: 80 Confidence: 50.9% Identity: 9% PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein Phyre2 PDB 2bs2 chain A domain 1 Region: 222 - 264 Aligned: 39 Modelled: 40 Confidence: 49.8% Identity: 28% Fold: Spectrin repeat-like Superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Family: Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Phyre2 PDB 1z0s chain A domain 1 Region: 11 - 82 Aligned: 69 Modelled: 72 Confidence: 48.4% Identity: 16% Fold: NAD kinase/diacylglycerol kinase-like Superfamily: NAD kinase/diacylglycerol kinase-like Family: NAD kinase-like Phyre2 PDB 1z0z chain C Region: 11 - 82 Aligned: 69 Modelled: 72 Confidence: 47.3% Identity: 16% PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad Phyre2 PDB 3afo chain B Region: 36 - 82 Aligned: 45 Modelled: 47 Confidence: 44.7% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh Phyre2 PDB 2ehj chain A Region: 111 - 170 Aligned: 57 Modelled: 60 Confidence: 40.5% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of uracil phosphoribosyl transferase Phyre2 PDB 2fug chain 6 domain 1 Region: 33 - 70 Aligned: 38 Modelled: 37 Confidence: 38.7% Identity: 26% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nq06-like Phyre2 PDB 3fi9 chain B Region: 37 - 147 Aligned: 81 Modelled: 85 Confidence: 38.1% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from porphyromonas2 gingivalis Phyre2 PDB 1bd3 chain A Region: 112 - 170 Aligned: 58 Modelled: 59 Confidence: 37.9% Identity: 10% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1o5o chain A Region: 112 - 170 Aligned: 56 Modelled: 59 Confidence: 37.9% Identity: 11% Fold: PRTase-like Superfamily: PRTase-like Family: Phosphoribosyltransferases (PRTases) Phyre2 PDB 1hm5 chain A Region: 12 - 153 Aligned: 115 Modelled: 116 Confidence: 36.3% Identity: 15% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 1a3x chain A domain 3 Region: 49 - 151 Aligned: 95 Modelled: 103 Confidence: 34.9% Identity: 9% Fold: Pyruvate kinase C-terminal domain-like Superfamily: PK C-terminal domain-like Family: Pyruvate kinase, C-terminal domain Phyre2 PDB 2e55 chain D Region: 112 - 170 Aligned: 56 Modelled: 59 Confidence: 34.3% Identity: 7% PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus Phyre2 1 c3ca8B_ 2 c2q8nB_ 3 c3k13A_ 4 d1i5ea_ 5 c3dmpD_ 6 c1zzgB_ 7 d1iata_ 8 c2h9aB_ 9 d2bs2a1 10 d1z0sa1 11 c1z0zC_ 12 c3afoB_ 13 c2ehjA_ 14 d2fug61 15 c3fi9B_ 16 d1bd3a_ 17 d1o5oa_ 18 d1hm5a_ 19 d1a3xa3 20 c2e55D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ca8B_ 100.0 100 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 2 c2q8nB_ 86.7 13 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution 3 c3k13A_ 58.6 9 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 4 d1i5ea_ 56.2 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 5 c3dmpD_ 54.5 12 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 6 c1zzgB_ 53.8 14 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 7 d1iata_ 51.7 17 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 8 c2h9aB_ 50.9 9 PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein 9 d2bs2a1 49.8 28 Fold:Spectrin repeat-like Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 10 d1z0sa1 48.4 16 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 11 c1z0zC_ 47.3 16 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 12 c3afoB_ 44.7 20 PDB header:transferase Chain: B: PDB Molecule:nadh kinase pos5; PDBTitle: crystal structure of yeast nadh kinase complexed with nadh 13 c2ehjA_ 40.5 19 PDB header:transferase Chain: A: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of uracil phosphoribosyl transferase 14 d2fug61 38.7 26 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 15 c3fi9B_ 38.1 12 PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from porphyromonas2 gingivalis 16 d1bd3a_ 37.9 10 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 17 d1o5oa_ 37.9 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 18 d1hm5a_ 36.3 15 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 19 d1a3xa3 34.9 9 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 20 c2e55D_ 34.3 7 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: structure of aq2163 protein from aquifex aeolicus 21 c3ljkA_ not modelled 31.9 11 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 22 d1u0ta_ not modelled 30.9 19 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 23 d1v9sa1 not modelled 30.9 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 24 c2wu8A_ not modelled 29.1 16 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv 25 d1ozha1 not modelled 28.7 24 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 26 c1w59B_ not modelled 28.5 24 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 27 d1t9ka_ not modelled 28.3 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 28 d1u0fa_ not modelled 27.9 15 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 29 c3bl5E_ not modelled 25.7 16 PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis 30 d1xtta1 not modelled 24.9 8 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 31 d1c7qa_ not modelled 24.2 13 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 32 d2nvma1 not modelled 21.5 24 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 33 c2kngA_ not modelled 20.8 50 PDB header:dna binding protein Chain: A: PDB Molecule:protein lsr2; PDBTitle: solution structure of c-domain of lsr2 34 d1saza2 not modelled 20.6 25 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 35 c2cunA_ not modelled 20.3 14 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 36 d2nlva1 not modelled 19.8 24 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 37 c3ibpA_ not modelled 19.5 23 PDB header:cell cycle Chain: A: PDB Molecule:chromosome partition protein mukb; PDBTitle: the crystal structure of the dimerization domain of escherichia coli2 structural maintenance of chromosomes protein mukb 38 c2k23A_ not modelled 19.3 14 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 2; PDBTitle: solution structure analysis of the rlcn2 39 c2an1D_ not modelled 19.1 24 PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2 40 d2nwva1 not modelled 18.7 12 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 41 d1e0ta3 not modelled 18.5 11 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 42 c3d7qB_ not modelled 18.3 24 PDB header:unknown function Chain: B: PDB Molecule:xisi protein-like; PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution 43 c3pfnB_ not modelled 17.8 21 PDB header:transferase Chain: B: PDB Molecule:nad kinase; PDBTitle: crystal structure of human nad kinase 44 d1gzda_ not modelled 17.4 12 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 45 c3ujhB_ not modelled 16.8 13 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii 46 c2r47C_ not modelled 16.8 22 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus 47 d1zuoa1 not modelled 16.6 8 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 48 c1zuoA_ not modelled 16.6 8 PDB header:ligase Chain: A: PDB Molecule:hypothetical protein loc92912; PDBTitle: structure of human ubiquitin-conjugating enzyme (ubci)2 involved in embryo attachment and implantation 49 c2vawA_ not modelled 16.3 22 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 50 d1saza1 not modelled 15.4 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 51 c2h9aA_ not modelled 14.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein 52 c1w5fA_ not modelled 14.1 23 PDB header:cell division Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz, t7 mutated, domain swapped (t. maritima) 53 d2c5sa1 not modelled 13.9 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 54 c3pr3B_ not modelled 13.8 12 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate 55 c1yt5A_ not modelled 13.6 25 PDB header:transferase Chain: A: PDB Molecule:inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of nad kinase from thermotoga maritima 56 c3hjbA_ not modelled 13.6 11 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae. 57 c3nyeA_ not modelled 13.5 12 PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine 58 d1vmia_ not modelled 13.5 15 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 59 c1vmiA_ not modelled 13.5 15 PDB header:transferase Chain: A: PDB Molecule:putative phosphate acetyltransferase; PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution 60 d2ji7a1 not modelled 13.4 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 61 d1rcua_ not modelled 12.7 16 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 62 c1rcuB_ not modelled 12.7 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 63 c3c00B_ not modelled 12.6 31 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:escu; PDBTitle: crystal structural of the mutated g247t escu/spas c-terminal domain 64 d1b8ta2 not modelled 12.5 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 65 c2vt1B_ not modelled 12.4 21 PDB header:membrane protein Chain: B: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system 66 d2e2ca_ not modelled 12.3 16 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 67 d1b8ta4 not modelled 12.1 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 68 d1xq9a_ not modelled 12.0 10 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 69 c2zf8A_ not modelled 11.9 24 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 70 c3rofA_ not modelled 11.9 17 PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa; PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa 71 c2fr1A_ not modelled 11.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:erythromycin synthase, eryai; PDBTitle: the first ketoreductase of the erythromycin synthase2 (crystal form 2) 72 d1j7ja_ not modelled 11.6 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 73 d1gpma1 not modelled 11.1 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 74 c2cx5B_ not modelled 11.0 15 PDB header:translation Chain: B: PDB Molecule:a putative trans-editing enzyme; PDBTitle: crystal structure of a putative trans-editing enzyme for2 prolyl trna synthetase 75 c2y9mA_ not modelled 10.7 10 PDB header:ligase/transport protein Chain: A: PDB Molecule:ubiquitin-conjugating enzyme e2-21 kda; PDBTitle: pex4p-pex22p structure 76 c2dplA_ not modelled 10.7 16 PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 77 c2yzkC_ not modelled 10.6 26 PDB header:transferase Chain: C: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 aeropyrum pernix 78 c2ywtA_ not modelled 9.7 14 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: crystal structure of hypoxanthine-guanine2 phosphoribosyltransferase with gmp from thermus3 thermophilus hb8 79 c3dezA_ not modelled 9.7 13 PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 streptococcus mutans 80 d2fiqa1 not modelled 9.6 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 81 d1qb7a_ not modelled 9.6 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 82 d1gph11 not modelled 9.6 17 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 83 c2j5tF_ not modelled 9.6 14 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 84 d1vg0a1 not modelled 9.4 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 85 d2nvuc1 not modelled 9.3 13 Fold:UBC-like Superfamily:UBC-like Family:UBC-related 86 d2vapa1 not modelled 9.3 24 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 87 c3t7yB_ not modelled 9.3 24 PDB header:protein transport Chain: B: PDB Molecule:yop proteins translocation protein u; PDBTitle: structure of an autocleavage-inactive mutant of the cytoplasmic domain2 of ct091, the yscu homologue of chlamydia trachomatis 88 c3c01H_ not modelled 9.3 21 PDB header:membrane protein, protein transport Chain: H: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structural of native spas c-terminal domain 89 d2djia1 not modelled 9.1 30 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 90 d1wyub1 not modelled 9.0 11 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P) 91 c1vbkA_ not modelled 9.0 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 92 d1g9sa_ not modelled 8.9 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 93 c3dm5A_ not modelled 8.8 10 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 94 c2p1zA_ not modelled 8.7 18 PDB header:transferase Chain: A: PDB Molecule:phosphoribosyltransferase; PDBTitle: crystal structure of phosphoribosyltransferase from corynebacterium2 diphtheriae 95 d2af4c1 not modelled 8.7 17 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 96 c2dhgA_ not modelled 8.7 16 PDB header:rna binding protein Chain: A: PDB Molecule:trna selenocysteine associated protein (secp43); PDBTitle: solution structure of the c-terminal rna recognition motif2 in trna selenocysteine associated protein 97 c3t5sA_ not modelled 8.5 14 PDB header:immune system Chain: A: PDB Molecule:macrophage migration inhibitory factor; PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia 98 c3bs8A_ not modelled 8.5 11 PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis 99 d1pb1a_ not modelled 8.5 13 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Dimeric isocitrate & isopropylmalate dehydrogenases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0