Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP43340
DateThu Jan 5 12:02:20 GMT 2012
Unique Job IDe4e5e4b47c26e76f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1dxqa_
Top template information
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
Confidence and coverage
Confidence:100.0% Coverage: 97%
190 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYRRNFNPVMTPEDEPDWK
Secondary structure 























SS confidence 



























































Disorder  ????











?










































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   .........70.........80.........90.........100.........110.........120
Sequence  NMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPF
Secondary structure 


























SS confidence 



























































Disorder 
???
















































?????

Disorder confidence 



























































 
   .........130.........140.........150.........160.........170.........180
Sequence  NKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHAS
Secondary structure 
















SS confidence 



























































Disorder 











???????






























???


?


Disorder confidence 



























































 
   .........190......
Sequence  YYQSLLSQVRDMVDAL
Secondary structure 

SS confidence 















Disorder 












???
Disorder confidence 















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1dxq chain A

3D model

Region: 2 - 196
Aligned: 190
Modelled: 190
Confidence: 100.0%
Identity: 23%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1d4a chain A

3D model

Region: 3 - 196
Aligned: 189
Modelled: 194
Confidence: 100.0%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 1qrd chain A

3D model

Region: 2 - 196
Aligned: 190
Modelled: 195
Confidence: 100.0%
Identity: 23%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 2qwx chain A domain 1

3D model

Region: 2 - 196
Aligned: 190
Modelled: 190
Confidence: 100.0%
Identity: 21%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 3lcm chain B

3D model

Region: 5 - 196
Aligned: 182
Modelled: 192
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159

Phyre2

PDB 3p0r chain A

3D model

Region: 4 - 195
Aligned: 189
Modelled: 192
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne

Phyre2

PDB 1t5b chain A

3D model

Region: 1 - 195
Aligned: 187
Modelled: 193
Confidence: 100.0%
Identity: 20%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 2z98 chain A domain 1

3D model

Region: 4 - 195
Aligned: 186
Modelled: 192
Confidence: 100.0%
Identity: 19%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 2v9c chain A

3D model

Region: 5 - 191
Aligned: 183
Modelled: 187
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.

Phyre2

PDB 2hpv chain A

3D model

Region: 4 - 195
Aligned: 184
Modelled: 192
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis

Phyre2

PDB 1sqs chain A

3D model

Region: 4 - 191
Aligned: 176
Modelled: 188
Confidence: 100.0%
Identity: 15%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Hypothetical protein SP1951

Phyre2

PDB 3f2v chain A

3D model

Region: 4 - 192
Aligned: 168
Modelled: 172
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.

Phyre2

PDB 3rpe chain A

3D model

Region: 4 - 189
Aligned: 164
Modelled: 164
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:modulator of drug activity b;
PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.

Phyre2

PDB 3ha2 chain B

3D model

Region: 4 - 196
Aligned: 163
Modelled: 165
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-quinone reductase;
PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a

Phyre2

PDB 2amj chain D

3D model

Region: 3 - 189
Aligned: 160
Modelled: 165
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: D: PDB Molecule:modulator of drug activity b;
PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7

Phyre2

PDB 3eyw chain A

3D model

Region: 2 - 191
Aligned: 170
Modelled: 173
Confidence: 100.0%
Identity: 26%
PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff

Phyre2

PDB 1rtt chain A

3D model

Region: 5 - 196
Aligned: 170
Modelled: 192
Confidence: 100.0%
Identity: 11%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 1t0i chain A

3D model

Region: 5 - 195
Aligned: 173
Modelled: 187
Confidence: 100.0%
Identity: 16%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 3k1y chain E

3D model

Region: 4 - 196
Aligned: 169
Modelled: 186
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d

Phyre2

PDB 3fvw chain A

3D model

Region: 4 - 196
Aligned: 171
Modelled: 193
Confidence: 100.0%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase;
PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.

Phyre2
1

d1dxqa_
2

d1d4aa_
3

d1qrda_
4

d2qwxa1
5

c3lcmB_
6

c3p0rA_
7

d1t5ba_
8

d2z98a1
9

c2v9cA_
10

c2hpvA_
11

d1sqsa_
12

c3f2vA_
13

c3rpeA_
14

c3ha2B_
15

c2amjD_
16

c3eywA_
17

d1rtta_
18

d1t0ia_
19

c3k1yE_
20

c3fvwA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1dxqa_



100.0 23 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
2d1d4aa_



100.0 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
3d1qrda_



100.0 23 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
4d2qwxa1



100.0 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
5c3lcmB_



100.0 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
6c3p0rA_



100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
7d1t5ba_



100.0 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
8d2z98a1



100.0 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
9c2v9cA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
10c2hpvA_



100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
11d1sqsa_



100.0 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein SP1951
12c3f2vA_



100.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
13c3rpeA_



100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:modulator of drug activity b;
PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
14c3ha2B_



100.0 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-quinone reductase;
PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a
15c2amjD_



100.0 18 PDB header:oxidoreductase
Chain: D: PDB Molecule:modulator of drug activity b;
PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7
16c3eywA_



100.0 26 PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
17d1rtta_



100.0 11 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
18d1t0ia_



100.0 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
19c3k1yE_



100.0 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d
20c3fvwA_



100.0 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase;
PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.
21c2q62A_



not modelled 100.0 14 PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti
22d1nni1_



not modelled 100.0 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
23c2vzhA_



not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-dependent fmn reductase;
PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex
24c2fzvC_



not modelled 100.0 16 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri
25d1rlia_



not modelled 100.0 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein YwqN
26d1ydga_



not modelled 99.9 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
27d2fzva1



not modelled 99.9 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
28c2zkiH_



not modelled 99.9 12 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
29c3b6iB_



not modelled 99.9 10 PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
30d2a5la1



not modelled 99.9 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
31c3d7nA_



not modelled 99.8 11 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
32d1e5da1



not modelled 99.8 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
33d2arka1



not modelled 99.7 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
34d1ycga1



not modelled 99.7 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
35c1ychD_



not modelled 99.7 14 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
36d1vmea1



not modelled 99.7 8 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
37c2ohiB_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
38c3klbA_



not modelled 99.7 16 PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
39c2q9uB_



not modelled 99.6 9 PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
40c3edoA_



not modelled 99.6 13 PDB header:flavoprotein
Chain: A: PDB Molecule:putative trp repressor binding protein;
PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
41c1e5dA_



not modelled 99.6 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
42c1vmeB_



not modelled 99.5 6 PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
43c3fniA_



not modelled 99.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
44c3hlyA_



not modelled 99.4 16 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
45d2fz5a1



not modelled 99.3 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
46c3f6sI_



not modelled 99.2 16 PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
47d5nula_



not modelled 99.2 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
48d1oboa_



not modelled 98.9 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
49d1b1ca_



not modelled 98.9 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
50d1f4pa_



not modelled 98.8 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
51d1ykga1



not modelled 98.8 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
52c2hnbA_



not modelled 98.8 13 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
53d1czna_



not modelled 98.7 23 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
54d1ag9a_



not modelled 98.7 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
55d1tlla2



not modelled 98.7 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
56d1bvyf_



not modelled 98.7 11 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
57c1bvyF_



not modelled 98.7 11 PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
58d1ja1a2



not modelled 98.6 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
59c3hr4C_



not modelled 98.6 14 PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
60c2wc1A_



not modelled 98.6 14 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
61d1yoba1



not modelled 98.3 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
62d1fuea_



not modelled 98.3 12 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
63d2fcra_



not modelled 98.3 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
64c2bpoA_



not modelled 98.0 15 PDB header:reductase
Chain: A: PDB Molecule:nadph-cytochrom p450 reductase;
PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a.
65c1tllA_



not modelled 97.9 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
66c1j9zB_



not modelled 97.7 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
67d1n57a_



not modelled 93.8 11 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
68d1gtza_



not modelled 93.6 13 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
69d1u7za_



not modelled 92.9 15 Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
70c3u80A_



not modelled 92.6 10 PDB header:unknown function
Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii;
PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum
71c2x2oA_



not modelled 92.5 17 PDB header:flavoprotein
Chain: A: PDB Molecule:nrdi protein;
PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state
72c2kyrA_



not modelled 92.3 22 PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
73d2r4qa1



not modelled 92.2 25 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
74d2r48a1



not modelled 89.8 18 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
75c3l4eA_



not modelled 89.4 16 PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized peptidase lmo0363;
PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
76d1e5qa1



not modelled 88.9 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
77c1e5lA_



not modelled 87.5 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine reductase;
PDBTitle: apo saccharopine reductase from magnaporthe grisea
78d1hdoa_



not modelled 86.6 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
79c2gk4A_



not modelled 85.5 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: the crystal structure of the dna/pantothenate metabolism flavoprotein2 from streptococcus pneumoniae
80c3re1B_



not modelled 85.4 21 PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen-iii synthetase;
PDBTitle: crystal structure of uroporphyrinogen iii synthase from pseudomonas2 syringae pv. tomato dc3000
81d1rlja_



not modelled 84.1 14 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavoprotein NrdI
82c2iyaB_



not modelled 83.5 19 PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
83c3kklA_



not modelled 83.3 8 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
84c1tvmA_



not modelled 83.1 9 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
85c3lwzC_



not modelled 82.7 14 PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis
86c2pv7B_



not modelled 82.7 21 PDB header:isomerase, oxidoreductase
Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm)
PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution
87c3mw8A_



not modelled 81.9 29 PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: crystal structure of an uroporphyrinogen-iii synthase (sama_3255) from2 shewanella amazonensis sb2b at 1.65 a resolution
88d1iiba_



not modelled 80.5 13 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
89c2l2qA_



not modelled 78.9 21 PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
90c3okaA_



not modelled 77.9 16 PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
91c3k5iB_



not modelled 77.1 15 PDB header:lyase
Chain: B: PDB Molecule:phosphoribosyl-aminoimidazole carboxylase;
PDBTitle: crystal structure of n5-carboxyaminoimidazole synthase from2 aspergillus clavatus in complex with adp and 5-3 aminoimadazole ribonucleotide
92c2f59B_



not modelled 77.0 19 PDB header:transferase
Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1;
PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
93d1u9ca_



not modelled 76.7 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
94c2x6rA_



not modelled 76.0 9 PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
95d1mv8a3



not modelled 75.5 8 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
96c2dlnA_



not modelled 74.5 12 PDB header:ligase(peptidoglycan synthesis)
Chain: A: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution
97c3n7tA_



not modelled 74.3 12 PDB header:protein binding
Chain: A: PDB Molecule:macrophage binding protein;
PDBTitle: crystal structure of a macrophage binding protein from coccidioides2 immitis
98c1jr2A_



not modelled 74.0 15 PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: structure of uroporphyrinogen iii synthase
99d1jr2a_



not modelled 74.0 15 Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
100c3gg2B_



not modelled 72.8 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose
PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate
101c3enkB_



not modelled 72.2 17 PDB header:isomerase
Chain: B: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei
102d1bg6a2



not modelled 71.8 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
103d1uqra_



not modelled 71.2 15 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
104c1np3B_



not modelled 69.5 10 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: crystal structure of class i acetohydroxy acid isomeroreductase from2 pseudomonas aeruginosa
105d2fmua1



not modelled 68.6 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
106c3q2oB_



not modelled 67.7 11 PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase
107c3p9zA_



not modelled 67.7 15 PDB header:ligase
Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd);
PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695
108c2r60A_



not modelled 66.8 17 PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
109d1l7da1



not modelled 66.2 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
110c2o3jC_



not modelled 65.9 12 PDB header:oxidoreductase
Chain: C: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: structure of caenorhabditis elegans udp-glucose dehydrogenase
111d1jmva_



not modelled 65.6 9 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:Universal stress protein-like
112c2eggA_



not modelled 65.5 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus
113d1xgka_



not modelled 64.9 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
114c3ktdC_



not modelled 63.5 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of a putative prephenate dehydrogenase (cgl0226)2 from corynebacterium glutamicum atcc 13032 at 2.60 a resolution
115d2hmva1



not modelled 63.3 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
116c3n7uD_



not modelled 63.1 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:formate dehydrogenase;
PDBTitle: nad-dependent formate dehydrogenase from higher-plant arabidopsis2 thaliana in complex with nad and azide
117c1bg6A_



not modelled 62.8 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:n-(1-d-carboxylethyl)-l-norvaline dehydrogenase;
PDBTitle: crystal structure of the n-(1-d-carboxylethyl)-l-norvaline2 dehydrogenase from arthrobacter sp. strain 1c
118c3n39D_



not modelled 62.7 9 PDB header:oxidoreductase
Chain: D: PDB Molecule:protein nrdi;
PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi
119c2axqA_



not modelled 62.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
120c3nbmA_



not modelled 62.3 14 PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0