Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	N	R	I	R	V	V	T	L	L	V	M	V	L	G	V	F	A	L	L	Q	L	I	S	G	S	L	F	F	S	S	L	H	H	S	Q	K	S	F	V	V	S	N	Q	L	R	E	Q	Q	G	E	L	T	S	T	W	D	L	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	Q	T	R	I	N	L	S	R	S	A	V	R	M	M	M	D	S	S	N	Q	Q	S	N	A	K	V	E	L	L	D	S	A	R	K	T	L	A	Q	A	A	T	H	Y	K	K	F	K	S	M	A	P	L	P	E	M	V	A	T	S
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?	?																										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	N	I	D	E	K	Y	K	N	Y	Y	T	A	L	T	E	L	I	D	Y	L	D	Y	G	N	T	G	A	Y	F	A	Q	P	T	Q	G	M	Q	N	A	M	G	E	A	F	A	Q	Y	A	L	S	S	E	K	L	Y	R	D	I	V
Secondary structure
SS confidence
Disorder																							?	?		?							?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	D	N	A	D	D	Y	R	F	A	Q	W	Q	L	A	V	I	A	L	V	V	V	L	I	L	L	V	A	W	Y	G	I	R	R	M	L	L	T	P	L	A	K	I	I	A	H	I	R	E	I	A	G	G	N	L	A	N	T	L	T
Secondary structure
SS confidence
Disorder																																																								?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	D	G	R	S	E	M	G	D	L	A	Q	S	V	S	H	M	Q	R	S	L	T	D	T	V	T	H	V	R	E	G	S	D	A	I	Y	A	G	T	R	E	I	A	A	G	N	T	D	L	S	S	R	T	E	Q	Q	A	S	A	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	E	T	A	A	S	M	E	Q	L	T	A	T	V	K	Q	N	A	D	N	A	R	Q	A	S	Q	L	A	Q	S	A	S	D	T	A	Q	H	G	G	K	V	V	D	G	V	V	K	T	M	H	E	I	A	D	S	S	K	K	I	A
Secondary structure
SS confidence
Disorder																		?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	I	I	S	V	I	D	G	I	A	F	Q	T	N	I	L	A	L	N	A	A	V	E	A	A	R	A	G	E	Q	G	R	G	F	A	V	V	A	G	E	V	R	N	L	A	S	R	S	A	Q	A	A	K	E	I	K	A	L	I	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		D	S	V	S	R	V	D	T	G	S	V	L	V	E	S	A	G	E	T	M	N	N	I	V	N	A	V	T	R	V	T	D	I	M	G	E	I	A	S	A	S	D	E	Q	S	R	G	I	D	Q	V	A	L	A	V	S	E	M	D	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		V	T	Q	Q	N	A	S	L	V	Q	E	S	A	A	A	A	A	A	L	E	E	Q	A	S	R	L	T	Q	A	V	S	A	F	R	L	A	A	S	P	L	T	N	K	P	Q	T	P	S	R	P	A	S	E	Q	P	P	A	Q	P	R
Secondary structure
SS confidence
Disorder																																		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.
Sequence		L	R	I	A	E	Q	D	P	N	W	E	T	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qu7 chain A Region: 293 - 518 Aligned: 226 Modelled: 226 Confidence: 99.9% Identity: 84% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor Phyre2 PDB 2ch7 chain A Region: 242 - 542 Aligned: 301 Modelled: 301 Confidence: 99.7% Identity: 21% PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima Phyre2 PDB 3g67 chain A Region: 282 - 493 Aligned: 212 Modelled: 212 Confidence: 99.5% Identity: 21% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima Phyre2 PDB 2d4u chain A Region: 23 - 182 Aligned: 160 Modelled: 160 Confidence: 98.3% Identity: 34% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr Phyre2 PDB 3lnr chain A Region: 205 - 374 Aligned: 152 Modelled: 152 Confidence: 98.1% Identity: 12% PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 Phyre2 PDB 2asr chain A Region: 39 - 179 Aligned: 141 Modelled: 141 Confidence: 98.0% Identity: 99% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 2lig chain A Region: 26 - 177 Aligned: 152 Modelled: 152 Confidence: 98.0% Identity: 69% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 1vlt chain A Region: 41 - 176 Aligned: 136 Modelled: 136 Confidence: 97.5% Identity: 70% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 2asx chain A domain 1 Region: 215 - 266 Aligned: 52 Modelled: 52 Confidence: 97.0% Identity: 27% Fold: HAMP domain-like Superfamily: HAMP domain-like Family: HAMP domain Phyre2 PDB 2rm8 chain A Region: 230 - 291 Aligned: 62 Modelled: 62 Confidence: 96.7% Identity: 19% PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis Phyre2 PDB 1sj8 chain A Region: 279 - 513 Aligned: 235 Modelled: 235 Confidence: 94.9% Identity: 9% PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789 Phyre2 PDB 3zrw chain B Region: 215 - 314 Aligned: 100 Modelled: 100 Confidence: 94.3% Identity: 19% PDB header:signaling protein Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz; PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant Phyre2 PDB 2wpq chain A Region: 413 - 510 Aligned: 98 Modelled: 98 Confidence: 93.0% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) Phyre2 PDB 3oja chain B Region: 399 - 514 Aligned: 116 Modelled: 116 Confidence: 80.6% Identity: 12% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 3dyj chain A Region: 214 - 514 Aligned: 301 Modelled: 301 Confidence: 72.5% Identity: 9% PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure a talin rod fragment Phyre2 PDB 2kbb chain A Region: 354 - 513 Aligned: 155 Modelled: 160 Confidence: 64.8% Identity: 12% PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 Phyre2 PDB 1deq chain O Region: 403 - 523 Aligned: 119 Modelled: 119 Confidence: 61.7% Identity: 16% PDB header: PDB COMPND: Phyre2 PDB 2qih chain A Region: 385 - 514 Aligned: 130 Modelled: 130 Confidence: 56.6% Identity: 12% PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis Phyre2 PDB 3hd7 chain A Region: 466 - 523 Aligned: 58 Modelled: 58 Confidence: 53.6% Identity: 26% PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 Phyre2 PDB 1ei3 chain E Region: 404 - 512 Aligned: 107 Modelled: 109 Confidence: 52.3% Identity: 16% PDB header: PDB COMPND: Phyre2 1 c1qu7A_ 2 c2ch7A_ 3 c3g67A_ 4 c2d4uA_ 5 c3lnrA_ 6 d2asra_ 7 d2liga_ 8 d1vlta_ 9 d2asxa1 10 c2rm8A_ 11 c1sj8A_ 12 c3zrwB_ 13 c2wpqA_ 14 c3ojaB_ 15 c3dyjA_ 16 c2kbbA_ 17 c1deqO_ 18 c2qihA_ 19 c3hd7A_ 20 c1ei3E_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qu7A_ 99.9 84 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 2 c2ch7A_ 99.7 21 PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima 3 c3g67A_ 99.5 21 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima 4 c2d4uA_ 98.3 34 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr 5 c3lnrA_ 98.1 12 PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2 6 d2asra_ 98.0 99 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 7 d2liga_ 98.0 69 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 8 d1vlta_ 97.5 70 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 9 d2asxa1 97.0 27 Fold:HAMP domain-like Superfamily:HAMP domain-like Family:HAMP domain 10 c2rm8A_ 96.7 19 PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis 11 c1sj8A_ 94.9 9 PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789 12 c3zrwB_ 94.3 19 PDB header:signaling protein Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz; PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant 13 c2wpqA_ 93.0 12 PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion) 14 c3ojaB_ 80.6 12 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 15 c3dyjA_ 72.5 9 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure a talin rod fragment 16 c2kbbA_ 64.8 12 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822 17 c1deqO_ 61.7 16 PDB header: PDB COMPND: 18 c2qihA_ 56.6 12 PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis 19 c3hd7A_ 53.6 26 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 20 c1ei3E_ 52.3 16 PDB header: PDB COMPND: 21 c1urqA_ not modelled 52.1 21 PDB header:transport protein Chain: A: PDB Molecule:m-tomosyn isoform; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn 22 c3b5nF_ not modelled 48.2 12 PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex 23 c3ipdB_ not modelled 46.6 13 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 24 c1sfcJ_ not modelled 44.8 13 PDB header:transport protein Chain: J: PDB Molecule:protein (syntaxin 1a); PDBTitle: neuronal synaptic fusion complex 25 c1n7sB_ not modelled 42.6 15 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 26 c1ei3C_ not modelled 41.6 6 PDB header: PDB COMPND: 27 c1deqF_ not modelled 40.2 5 PDB header: PDB COMPND: 28 c2ieqC_ not modelled 37.7 14 PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein 29 c1n7sA_ not modelled 37.1 25 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 30 c3ghgK_ not modelled 36.9 15 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 31 c2npsA_ not modelled 35.4 25 PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 4; PDBTitle: crystal structure of the early endosomal snare complex 32 c2vs0B_ not modelled 33.5 13 PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa 33 c2kseA_ not modelled 33.5 13 PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c 34 c2npsB_ not modelled 33.5 16 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex 35 c3b5nE_ not modelled 32.5 15 PDB header:membrane protein Chain: E: PDB Molecule:synaptobrevin homolog 1; PDBTitle: structure of the yeast plasma membrane snare complex 36 c1sfcI_ not modelled 30.4 26 PDB header:transport protein Chain: I: PDB Molecule:protein (synaptobrevin 2); PDBTitle: neuronal synaptic fusion complex 37 c2efrB_ not modelled 27.5 13 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 38 c1i49A_ not modelled 25.0 13 PDB header:signaling protein Chain: A: PDB Molecule:arfaptin 2; PDBTitle: crystal structure analysis of arfaptin 39 c1gl2A_ not modelled 22.4 13 PDB header:membrane protein Chain: A: PDB Molecule:endobrevin; PDBTitle: crystal structure of an endosomal snare core complex 40 c1m1jA_ not modelled 21.4 6 PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands 41 c3gvmA_ not modelled 18.4 11 PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae 42 c2bezC_ not modelled 17.3 16 PDB header:viral protein Chain: C: PDB Molecule:e2 glycoprotein; PDBTitle: structure of a proteolitically resistant core from the2 severe acute respiratory syndrome coronavirus s2 fusion3 protein 43 c1l4aD_ not modelled 17.1 7 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 44 c3arcl_ not modelled 16.8 35 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 45 c2npsD_ not modelled 16.2 5 PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex 46 c1sfcD_ not modelled 15.7 10 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 47 c3cwgA_ not modelled 15.4 9 PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment 48 c1nafA_ not modelled 15.4 15 PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain 49 c1kmiZ_ not modelled 15.3 7 PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez 50 d1ez3a_ not modelled 14.8 12 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 51 c2d3eD_ not modelled 14.5 8 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 52 c2d4yA_ not modelled 14.1 9 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 53 c3prrL_ not modelled 13.7 35 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 54 c3kziL_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 55 c3prqL_ not modelled 13.7 35 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 56 c1s5lL_ not modelled 13.7 35 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 57 c3bz1L_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 58 d2axtl1 not modelled 13.7 35 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 59 c3bz2L_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 60 c3a0hL_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 61 c3a0bl_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 62 c3a0bL_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 63 c1s5ll_ not modelled 13.7 35 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 64 c3arcL_ not modelled 13.7 35 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 65 c3a0hl_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 66 c2axtL_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 67 c2axtl_ not modelled 13.7 35 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 68 c1l7cA_ not modelled 13.4 13 PDB header:cell adhesion Chain: A: PDB Molecule:alpha e-catenin; PDBTitle: alpha-catenin fragment, residues 385-651 69 c1s94A_ not modelled 13.0 11 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei 70 d1s94a_ not modelled 13.0 11 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 71 c1zvaA_ not modelled 12.9 10 PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 72 c3ok8A_ not modelled 12.4 8 PDB header:protein binding Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein PDBTitle: i-bar of pinkbar 73 d1i4da_ not modelled 12.2 13 Fold:BAR/IMD domain-like Superfamily:BAR/IMD domain-like Family:Arfaptin, Rac-binding fragment 74 d1eq1a_ not modelled 11.9 9 Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III 75 d1r0da_ not modelled 10.7 11 Fold:I/LWEQ domain Superfamily:I/LWEQ domain Family:I/LWEQ domain 76 c3dtpA_ not modelled 10.6 18 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 77 c1eboE_ not modelled 10.2 18 PDB header:viral protein Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain 78 c3b5nL_ not modelled 10.2 11 PDB header:membrane protein Chain: L: PDB Molecule:protein transport protein sec9; PDBTitle: structure of the yeast plasma membrane snare complex 79 c1gl2D_ not modelled 10.2 25 PDB header:membrane protein Chain: D: PDB Molecule:syntaxin 8; PDBTitle: crystal structure of an endosomal snare core complex 80 c3c98B_ not modelled 10.1 10 PDB header:endocytosis/exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: revised structure of the munc18a-syntaxin1 complex 81 c1l4aC_ not modelled 10.1 7 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 82 c3gxvD_ not modelled 10.0 15 PDB header:hydrolase/replication Chain: D: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase 83 c2dnxA_ not modelled 9.8 9 PDB header:transport protein Chain: A: PDB Molecule:syntaxin-12; PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna 84 c3gxvC_ not modelled 9.6 15 PDB header:hydrolase/replication Chain: C: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase 85 d1oxza_ not modelled 9.5 15 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 86 c1oxzA_ not modelled 9.5 15 PDB header:membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain 87 c1wyyB_ not modelled 9.2 16 PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein 88 d1wr6a1 not modelled 9.1 9 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 89 c2l9uA_ not modelled 9.1 13 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 90 c1junB_ not modelled 9.0 25 PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer 91 d1t01a1 not modelled 8.9 12 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 92 c1n73C_ not modelled 8.9 15 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 93 c1zv8I_ not modelled 8.9 7 PDB header:viral protein Chain: I: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion 94 d1lvfa_ not modelled 8.8 15 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 95 c1ciiA_ not modelled 8.6 12 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 96 c3hnwB_ not modelled 8.5 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 97 c2qrxA_ not modelled 8.4 9 PDB header:dna binding protein Chain: A: PDB Molecule:gm27569p; PDBTitle: crystal structure of drosophila melanogaster translin2 protein 98 c2l16A_ not modelled 8.2 14 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 99 c1y4cA_ not modelled 8.1 10 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0