PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3c98B_

Fold library id	PDB Header	Molecule	Title
c3c98B_	PDB header: endocytosis/exocytosis	Chain: B: PDB Molecule: syntaxin-1a;	PDBTitle: revised structure of the munc18a-syntaxin1 complex

Links to external resources
Added to library: Tue Mar 16 12:53:23 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K D R T Q E L R D R F M D E F F E Q V E E I R G F I D K I A E N V E E V K R K H S A I L A S P N P D E K T K E E L E E L M S D I K K T A N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T T
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V R S K L K S I E Q S I E Q E E G L N R S S A D L R I R K T Q H S T L S R K F V E V M S E Y N A T Q S D Y R E R C K G R I Q R Q L E I T G R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T T T S E E L E D M L E S G N P A I F A S G I I M D S S I S K Q A L S E I E T R H S E I I K L E N S I R E L H D M F M D M A M L V E S Q G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S T T T S
S
S S S T T T T
S

. . . . . . . . . 220 . . . . . . . . . 230

Sequence M I D R I E Y N V E H A V D Y V E R A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	D	R	T	Q	E	L	R	D	R	F	M	D	E	F	F	E	Q	V	E	E	I	R	G	F	I	D	K	I	A	E	N	V	E	E	V	K	R	K	H	S	A	I	L	A	S	P	N	P	D	E	K	T	K	E	E	L	E	E	L	M	S	D	I	K	K	T	A	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T				T	T																																	T		S	S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	R	S	K	L	K	S	I	E	Q	S	I	E	Q	E	E	G	L	N	R	S	S	A	D	L	R	I	R	K	T	Q	H	S	T	L	S	R	K	F	V	E	V	M	S	E	Y	N	A	T	Q	S	D	Y	R	E	R	C	K	G	R	I	Q	R	Q	L	E	I	T	G	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	T			S																																															T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	T	T	S	E	E	L	E	D	M	L	E	S	G	N	P	A	I	F	A	S	G	I	I	M	D	S	S	I	S	K	Q	A	L	S	E	I	E	T	R	H	S	E	I	I	K	L	E	N	S	I	R	E	L	H	D	M	F	M	D	M	A	M	L	V	E	S	Q	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S			T	T	S	S	T	T	T	S		S		S	S	S	T	T																						T	T																S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	M	I	D	R	I	E	Y	N	V	E	H	A	V	D	Y	V	E	R	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G								T