Phyre 2 Results for P07017

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Email | l.a.kelley@imperial.ac.uk
Description | P07017
Date | Thu Jan 5 11:00:02 GMT 2012
Unique Job ID | e43c6b1d80074314

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1qu7A_
Top template information
PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
Confidence and coverage
Confidence: | 99.9% | Coverage: | 41%
226 residues ( 41% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
498 residues ( 90%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | I | N | R | I | R | V | V | T | L | L | V | M | V | L | G | V | F | A | L | L | Q | L | I | S | G | S | L | F | F | S | S | L | H | H | S | Q | K | S | F | V | V | S | N | Q | L | R | E | Q | Q | G | E | L | T | S | T | W | D | L | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | Q | T | R | I | N | L | S | R | S | A | V | R | M | M | M | D | S | S | N | Q | Q | S | N | A | K | V | E | L | L | D | S | A | R | K | T | L | A | Q | A | A | T | H | Y | K | K | F | K | S | M | A | P | L | P | E | M | V | A | T | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | R | N | I | D | E | K | Y | K | N | Y | Y | T | A | L | T | E | L | I | D | Y | L | D | Y | G | N | T | G | A | Y | F | A | Q | P | T | Q | G | M | Q | N | A | M | G | E | A | F | A | Q | Y | A | L | S | S | E | K | L | Y | R | D | I | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | D | N | A | D | D | Y | R | F | A | Q | W | Q | L | A | V | I | A | L | V | V | V | L | I | L | L | V | A | W | Y | G | I | R | R | M | L | L | T | P | L | A | K | I | I | A | H | I | R | E | I | A | G | G | N | L | A | N | T | L | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | I | D | G | R | S | E | M | G | D | L | A | Q | S | V | S | H | M | Q | R | S | L | T | D | T | V | T | H | V | R | E | G | S | D | A | I | Y | A | G | T | R | E | I | A | A | G | N | T | D | L | S | S | R | T | E | Q | Q | A | S | A | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | E | E | T | A | A | S | M | E | Q | L | T | A | T | V | K | Q | N | A | D | N | A | R | Q | A | S | Q | L | A | Q | S | A | S | D | T | A | Q | H | G | G | K | V | V | D | G | V | V | K | T | M | H | E | I | A | D | S | S | K | K | I | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | D | I | I | S | V | I | D | G | I | A | F | Q | T | N | I | L | A | L | N | A | A | V | E | A | A | R | A | G | E | Q | G | R | G | F | A | V | V | A | G | E | V | R | N | L | A | S | R | S | A | Q | A | A | K | E | I | K | A | L | I | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | D | S | V | S | R | V | D | T | G | S | V | L | V | E | S | A | G | E | T | M | N | N | I | V | N | A | V | T | R | V | T | D | I | M | G | E | I | A | S | A | S | D | E | Q | S | R | G | I | D | Q | V | A | L | A | V | S | E | M | D | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | V | T | Q | Q | N | A | S | L | V | Q | E | S | A | A | A | A | A | A | L | E | E | Q | A | S | R | L | T | Q | A | V | S | A | F | R | L | A | A | S | P | L | T | N | K | P | Q | T | P | S | R | P | A | S | E | Q | P | P | A | Q | P | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | .
Sequence |  | L | R | I | A | E | Q | D | P | N | W | E | T | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1qu7A_ |

### PDB 1qu7 chain A

Region: 293 - 518
Aligned: 226
Modelled: 226
Confidence: 99.9%
Identity: 84%
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor

Phyre2
2 |
| c2ch7A_ |

### PDB 2ch7 chain A

Region: 242 - 542
Aligned: 301
Modelled: 301
Confidence: 99.7%
Identity: 21%
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima

Phyre2
3 |
| c3g67A_ |

### PDB 3g67 chain A

Region: 282 - 493
Aligned: 212
Modelled: 212
Confidence: 99.5%
Identity: 21%
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima

Phyre2
4 |
| c2d4uA_ |

### PDB 2d4u chain A

Region: 23 - 182
Aligned: 160
Modelled: 160
Confidence: 98.3%
Identity: 34%
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr

Phyre2
5 |
| c3lnrA_ |

### PDB 3lnr chain A

Region: 205 - 374
Aligned: 152
Modelled: 152
Confidence: 98.1%
Identity: 12%
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2

Phyre2
6 |
| d2asra_ |

### PDB 2asr chain A

Region: 39 - 179
Aligned: 141
Modelled: 141
Confidence: 98.0%
Identity: 99%
Fold: Four-helical up-and-down bundle
Superfamily: Aspartate receptor, ligand-binding domain
Family: Aspartate receptor, ligand-binding domain

Phyre2
7 |
| d2liga_ |

### PDB 2lig chain A

Region: 26 - 177
Aligned: 152
Modelled: 152
Confidence: 98.0%
Identity: 69%
Fold: Four-helical up-and-down bundle
Superfamily: Aspartate receptor, ligand-binding domain
Family: Aspartate receptor, ligand-binding domain

Phyre2
8 |
| d1vlta_ |

### PDB 1vlt chain A

Region: 41 - 176
Aligned: 136
Modelled: 136
Confidence: 97.5%
Identity: 70%
Fold: Four-helical up-and-down bundle
Superfamily: Aspartate receptor, ligand-binding domain
Family: Aspartate receptor, ligand-binding domain

Phyre2
9 |
| d2asxa1 |

### PDB 2asx chain A domain 1

Region: 215 - 266
Aligned: 52
Modelled: 52
Confidence: 97.0%
Identity: 27%
Fold: HAMP domain-like
Superfamily: HAMP domain-like
Family: HAMP domain

Phyre2
10 |
| c2rm8A_ |

### PDB 2rm8 chain A

Region: 230 - 291
Aligned: 62
Modelled: 62
Confidence: 96.7%
Identity: 19%
PDB header:signaling protein
Chain: A: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis

Phyre2
11 |
| c1sj8A_ |

### PDB 1sj8 chain A

Region: 279 - 513
Aligned: 235
Modelled: 235
Confidence: 94.9%
Identity: 9%
PDB header:structural protein
Chain: A: PDB Molecule:talin 1;
PDBTitle: crystal structure of talin residues 482-789

Phyre2
12 |
| c3zrwB_ |

### PDB 3zrw chain B

Region: 215 - 314
Aligned: 100
Modelled: 100
Confidence: 94.3%
Identity: 19%
PDB header:signaling protein
Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz;
PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant

Phyre2
13 |
| c2wpqA_ |

### PDB 2wpq chain A

Region: 413 - 510
Aligned: 98
Modelled: 98
Confidence: 93.0%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion)

Phyre2
14 |
| c3ojaB_ |

### PDB 3oja chain B

Region: 399 - 514
Aligned: 116
Modelled: 116
Confidence: 80.6%
Identity: 12%
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex

Phyre2
15 |
| c3dyjA_ |

### PDB 3dyj chain A

Region: 214 - 514
Aligned: 301
Modelled: 301
Confidence: 72.5%
Identity: 9%
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: crystal structure a talin rod fragment

Phyre2
16 |
| c2kbbA_ |

### PDB 2kbb chain A

Region: 354 - 513
Aligned: 155
Modelled: 160
Confidence: 64.8%
Identity: 12%
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin rod domain, 1655-1822

Phyre2
17 |
| c1deqO_ |

### PDB 1deq chain O

Region: 403 - 523
Aligned: 119
Modelled: 119
Confidence: 61.7%
Identity: 16%
PDB header:
PDB COMPND:

Phyre2
18 |
| c2qihA_ |

### PDB 2qih chain A

Region: 385 - 514
Aligned: 130
Modelled: 130
Confidence: 56.6%
Identity: 12%
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis

Phyre2
19 |
| c3hd7A_ |

### PDB 3hd7 chain A

Region: 466 - 523
Aligned: 58
Modelled: 58
Confidence: 53.6%
Identity: 26%
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1

Phyre2
20 |
| c1ei3E_ |

### PDB 1ei3 chain E

Region: 404 - 512
Aligned: 107
Modelled: 109
Confidence: 52.3%
Identity: 16%
PDB header:
PDB COMPND:

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1qu7A_ |
|  | 99.9 | 84 | PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
2 | c2ch7A_ |
|  | 99.7 | 21 | PDB header:chemotaxis Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
3 | c3g67A_ |
|  | 99.5 | 21 | PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein; PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
4 | c2d4uA_ |
|  | 98.3 | 34 | PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr
5 | c3lnrA_ |
|  | 98.1 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:aerotaxis transducer aer2; PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
6 | d2asra_ |
|  | 98.0 | 99 | Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain
7 | d2liga_ |
|  | 98.0 | 69 | Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain
8 | d1vlta_ |
|  | 97.5 | 70 | Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain
9 | d2asxa1 |
|  | 97.0 | 27 | Fold:HAMP domain-like Superfamily:HAMP domain-like Family:HAMP domain
10 | c2rm8A_ |
|  | 96.7 | 19 | PDB header:signaling protein Chain: A: PDB Molecule:sensory rhodopsin ii transducer; PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis
11 | c1sj8A_ |
|  | 94.9 | 9 | PDB header:structural protein Chain: A: PDB Molecule:talin 1; PDBTitle: crystal structure of talin residues 482-789
12 | c3zrwB_ |
|  | 94.3 | 19 | PDB header:signaling protein Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz; PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant
13 | c2wpqA_ |
|  | 93.0 | 12 | PDB header:membrane protein Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment; PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion)
14 | c3ojaB_ |
|  | 80.6 | 12 | PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex
15 | c3dyjA_ |
|  | 72.5 | 9 | PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure a talin rod fragment
16 | c2kbbA_ |
|  | 64.8 | 12 | PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin rod domain, 1655-1822
17 | c1deqO_ |
|  | 61.7 | 16 | PDB header: PDB COMPND:
18 | c2qihA_ |
|  | 56.6 | 12 | PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis
19 | c3hd7A_ |
|  | 53.6 | 26 | PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
20 | c1ei3E_ |
|  | 52.3 | 16 | PDB header: PDB COMPND:
21 | c1urqA_ |
| not modelled | 52.1 | 21 | PDB header:transport protein Chain: A: PDB Molecule:m-tomosyn isoform; PDBTitle: crystal structure of neuronal q-snares in complex with2 r-snare motif of tomosyn
22 | c3b5nF_ |
| not modelled | 48.2 | 12 | PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex
23 | c3ipdB_ |
| not modelled | 46.6 | 13 | PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
24 | c1sfcJ_ |
| not modelled | 44.8 | 13 | PDB header:transport protein Chain: J: PDB Molecule:protein (syntaxin 1a); PDBTitle: neuronal synaptic fusion complex
25 | c1n7sB_ |
| not modelled | 42.6 | 15 | PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex
26 | c1ei3C_ |
| not modelled | 41.6 | 6 | PDB header: PDB COMPND:
27 | c1deqF_ |
| not modelled | 40.2 | 5 | PDB header: PDB COMPND:
28 | c2ieqC_ |
| not modelled | 37.7 | 14 | PDB header:viral protein Chain: C: PDB Molecule:spike glycoprotein; PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
29 | c1n7sA_ |
| not modelled | 37.1 | 25 | PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: high resolution structure of a truncated neuronal snare2 complex
30 | c3ghgK_ |
| not modelled | 36.9 | 15 | PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen
31 | c2npsA_ |
| not modelled | 35.4 | 25 | PDB header:transport protein Chain: A: PDB Molecule:vesicle-associated membrane protein 4; PDBTitle: crystal structure of the early endosomal snare complex
32 | c2vs0B_ |
| not modelled | 33.5 | 13 | PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
33 | c2kseA_ |
| not modelled | 33.5 | 13 | PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c
34 | c2npsB_ |
| not modelled | 33.5 | 16 | PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex
35 | c3b5nE_ |
| not modelled | 32.5 | 15 | PDB header:membrane protein Chain: E: PDB Molecule:synaptobrevin homolog 1; PDBTitle: structure of the yeast plasma membrane snare complex
36 | c1sfcI_ |
| not modelled | 30.4 | 26 | PDB header:transport protein Chain: I: PDB Molecule:protein (synaptobrevin 2); PDBTitle: neuronal synaptic fusion complex
37 | c2efrB_ |
| not modelled | 27.5 | 13 | PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution
38 | c1i49A_ |
| not modelled | 25.0 | 13 | PDB header:signaling protein Chain: A: PDB Molecule:arfaptin 2; PDBTitle: crystal structure analysis of arfaptin
39 | c1gl2A_ |
| not modelled | 22.4 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:endobrevin; PDBTitle: crystal structure of an endosomal snare core complex
40 | c1m1jA_ |
| not modelled | 21.4 | 6 | PDB header:blood clotting Chain: A: PDB Molecule:fibrinogen alpha subunit; PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
41 | c3gvmA_ |
| not modelled | 18.4 | 11 | PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
42 | c2bezC_ |
| not modelled | 17.3 | 16 | PDB header:viral protein Chain: C: PDB Molecule:e2 glycoprotein; PDBTitle: structure of a proteolitically resistant core from the2 severe acute respiratory syndrome coronavirus s2 fusion3 protein
43 | c1l4aD_ |
| not modelled | 17.1 | 7 | PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
44 | c3arcl_ |
| not modelled | 16.8 | 35 | PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
45 | c2npsD_ |
| not modelled | 16.2 | 5 | PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex
46 | c1sfcD_ |
| not modelled | 15.7 | 10 | PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex
47 | c3cwgA_ |
| not modelled | 15.4 | 9 | PDB header:transcription Chain: A: PDB Molecule:signal transducer and activator of transcription PDBTitle: unphosphorylated mouse stat3 core fragment
48 | c1nafA_ |
| not modelled | 15.4 | 15 | PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain
49 | c1kmiZ_ |
| not modelled | 15.3 | 7 | PDB header:signaling protein Chain: Z: PDB Molecule:chemotaxis protein chez; PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
50 | d1ez3a_ |
| not modelled | 14.8 | 12 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
51 | c2d3eD_ |
| not modelled | 14.5 | 8 | PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin
52 | c2d4yA_ |
| not modelled | 14.1 | 9 | PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
53 | c3prrL_ |
| not modelled | 13.7 | 35 | PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
54 | c3kziL_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
55 | c3prqL_ |
| not modelled | 13.7 | 35 | PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
56 | c1s5lL_ |
| not modelled | 13.7 | 35 | PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center
57 | c3bz1L_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer
58 | d2axtl1 |
| not modelled | 13.7 | 35 | Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like
59 | c3bz2L_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer
60 | c3a0hL_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex
61 | c3a0bl_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex
62 | c3a0bL_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex
63 | c1s5ll_ |
| not modelled | 13.7 | 35 | PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center
64 | c3arcL_ |
| not modelled | 13.7 | 35 | PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
65 | c3a0hl_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex
66 | c2axtL_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
67 | c2axtl_ |
| not modelled | 13.7 | 35 | PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
68 | c1l7cA_ |
| not modelled | 13.4 | 13 | PDB header:cell adhesion Chain: A: PDB Molecule:alpha e-catenin; PDBTitle: alpha-catenin fragment, residues 385-651
69 | c1s94A_ |
| not modelled | 13.0 | 11 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei
70 | d1s94a_ |
| not modelled | 13.0 | 11 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
71 | c1zvaA_ |
| not modelled | 12.9 | 10 | PDB header:viral protein Chain: A: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion
72 | c3ok8A_ |
| not modelled | 12.4 | 8 | PDB header:protein binding Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein PDBTitle: i-bar of pinkbar
73 | d1i4da_ |
| not modelled | 12.2 | 13 | Fold:BAR/IMD domain-like Superfamily:BAR/IMD domain-like Family:Arfaptin, Rac-binding fragment
74 | d1eq1a_ |
| not modelled | 11.9 | 9 | Fold:Apolipophorin-III Superfamily:Apolipophorin-III Family:Apolipophorin-III
75 | d1r0da_ |
| not modelled | 10.7 | 11 | Fold:I/LWEQ domain Superfamily:I/LWEQ domain Family:I/LWEQ domain
76 | c3dtpA_ |
| not modelled | 10.6 | 18 | PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
77 | c1eboE_ |
| not modelled | 10.2 | 18 | PDB header:viral protein Chain: E: PDB Molecule:ebola virus envelope protein chimera consisting PDBTitle: crystal structure of the ebola virus membrane-fusion2 subunit, gp2, from the envelope glycoprotein ectodomain
78 | c3b5nL_ |
| not modelled | 10.2 | 11 | PDB header:membrane protein Chain: L: PDB Molecule:protein transport protein sec9; PDBTitle: structure of the yeast plasma membrane snare complex
79 | c1gl2D_ |
| not modelled | 10.2 | 25 | PDB header:membrane protein Chain: D: PDB Molecule:syntaxin 8; PDBTitle: crystal structure of an endosomal snare core complex
80 | c3c98B_ |
| not modelled | 10.1 | 10 | PDB header:endocytosis/exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: revised structure of the munc18a-syntaxin1 complex
81 | c1l4aC_ |
| not modelled | 10.1 | 7 | PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei
82 | c3gxvD_ |
| not modelled | 10.0 | 15 | PDB header:hydrolase/replication Chain: D: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase
83 | c2dnxA_ |
| not modelled | 9.8 | 9 | PDB header:transport protein Chain: A: PDB Molecule:syntaxin-12; PDBTitle: solution structure of rsgi ruh-063, an n-terminal domain of2 syntaxin 12 from human cdna
84 | c3gxvC_ |
| not modelled | 9.6 | 15 | PDB header:hydrolase/replication Chain: C: PDB Molecule:replicative dna helicase; PDBTitle: three-dimensional structure of n-terminal domain of dnab2 helicase from helicobacter pylori and its interactions with3 primase
85 | d1oxza_ |
| not modelled | 9.5 | 15 | Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain
86 | c1oxzA_ |
| not modelled | 9.5 | 15 | PDB header:membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain
87 | c1wyyB_ |
| not modelled | 9.2 | 16 | PDB header:viral protein Chain: B: PDB Molecule:e2 glycoprotein; PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein
88 | d1wr6a1 |
| not modelled | 9.1 | 9 | Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain
89 | c2l9uA_ |
| not modelled | 9.1 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
90 | c1junB_ |
| not modelled | 9.0 | 25 | PDB header:transcription regulation Chain: B: PDB Molecule:c-jun homodimer; PDBTitle: nmr study of c-jun homodimer
91 | d1t01a1 |
| not modelled | 8.9 | 12 | Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin
92 | c1n73C_ |
| not modelled | 8.9 | 15 | PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide
93 | c1zv8I_ |
| not modelled | 8.9 | 7 | PDB header:viral protein Chain: I: PDB Molecule:e2 glycoprotein; PDBTitle: a structure-based mechanism of sars virus membrane fusion
94 | d1lvfa_ |
| not modelled | 8.8 | 15 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
95 | c1ciiA_ |
| not modelled | 8.6 | 12 | PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
96 | c3hnwB_ |
| not modelled | 8.5 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
97 | c2qrxA_ |
| not modelled | 8.4 | 9 | PDB header:dna binding protein Chain: A: PDB Molecule:gm27569p; PDBTitle: crystal structure of drosophila melanogaster translin2 protein
98 | c2l16A_ |
| not modelled | 8.2 | 14 | PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
99 | c1y4cA_ |
| not modelled | 8.1 | 10 | PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0