Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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60

Sequence

M

K

N

Q

A

H

P

I

I

V

V

K

R

R

K

A

K

S

H

G

A

A

H

G

S

W

K

I

A

Y

A

D

F

M

T

A

M

M

A

F

F

L

V

M

W

L

I

S

I

S

S

P

K

E

L

I

Q

I

A

E

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

Y

F

R

T

P

L

A

T

A

V

T

G

G

D

R

I

S

N

S

E

S

P

I

P

G

G

G

D

D

Y

T

Q

S

Q

G

E

V

N

K

Q

P

N

I

E

E

L

K

K

R

M

E

Q

S

R

L

R

K

L

R

G

Secondary structure

SS confidence

Disorder

?

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?

Disorder confidence

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130

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140

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150

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160

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170

.

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180

Sequence

D

L

D

Q

L

I

E

S

D

P

K

L

R

A

L

R

P

H

L

K

I

D

L

V

Q

E

G

L

R

I

Q

I

I

D

S

Q

N

R

P

M

F

R

T

G

S

A

D

V

E

P

Y

M

R

D

I

L

R

A

I

A

Secondary structure

SS confidence

Disorder

?

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?

Disorder confidence

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190

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200

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210

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220

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.

230

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240

Sequence

P

V

L

N

G

I

P

N

R

I

S

L

S

G

H

T

D

D

F

P

Y

A

S

G

E

K

G

Y

S

N

W

E

L

S

A

D

R

A

N

A

S

R

R

E

L

M

V

G

G

L

D

S

G

K

V

L

R

V

V

G

Secondary structure

SS confidence

Disorder

?

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?

?

?

?

?

?

?

?

Disorder confidence

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250

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260

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270

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280

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290

.

.

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.

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.

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.

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300

Sequence

M

A

A

T

M

R

L

S

D

R

G

P

D

D

A

V

N

R

R

I

S

L

L

V

L

N

K

Q

A

E

Q

A

I

L

H

E

N

A

E

S

Q

N

E

P

V

S

A

L

E

K

P

E

V

A

P

Q

V

S

V

P

Secondary structure

SS confidence

Disorder

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?

Disorder confidence

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Sequence

T

M

P

S

A

E

P

R

Secondary structure

SS confidence

Disorder

?

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?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2zvy chain B Region: 101 - 276 Aligned: 176 Modelled: 176 Confidence: 100.0% Identity: 94% PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) Phyre2 PDB 3khn chain B Region: 111 - 267 Aligned: 153 Modelled: 157 Confidence: 100.0% Identity: 17% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. Phyre2 PDB 2zov chain A Region: 108 - 279 Aligned: 163 Modelled: 172 Confidence: 100.0% Identity: 91% PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i) Phyre2 PDB 2l26 chain A Region: 156 - 264 Aligned: 103 Modelled: 109 Confidence: 100.0% Identity: 27% PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains Phyre2 PDB 3cyq chain M Region: 157 - 284 Aligned: 126 Modelled: 128 Confidence: 100.0% Identity: 21% PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid Phyre2 PDB 2k1s chain A Region: 124 - 265 Aligned: 133 Modelled: 142 Confidence: 100.0% Identity: 21% PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. Phyre2 PDB 3ldt chain A Region: 122 - 269 Aligned: 136 Modelled: 147 Confidence: 99.9% Identity: 19% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila Phyre2 PDB 2kgw chain A Region: 155 - 264 Aligned: 104 Modelled: 110 Confidence: 99.9% Identity: 26% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis Phyre2 PDB 3td4 chain D Region: 153 - 267 Aligned: 109 Modelled: 115 Confidence: 99.9% Identity: 25% PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate Phyre2 PDB 2aiz chain P domain 1 Region: 157 - 263 Aligned: 101 Modelled: 107 Confidence: 99.9% Identity: 29% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 2hqs chain C domain 1 Region: 156 - 263 Aligned: 102 Modelled: 108 Confidence: 99.9% Identity: 24% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 1r1m chain A Region: 153 - 266 Aligned: 108 Modelled: 114 Confidence: 99.9% Identity: 21% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 1r1m chain A Region: 153 - 266 Aligned: 108 Modelled: 114 Confidence: 99.9% Identity: 21% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis Phyre2 PDB 3oon chain A Region: 138 - 266 Aligned: 112 Modelled: 129 Confidence: 99.9% Identity: 24% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 Phyre2 PDB 2zf8 chain A Region: 159 - 242 Aligned: 71 Modelled: 84 Confidence: 99.5% Identity: 18% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 3l7p chain A Region: 217 - 273 Aligned: 47 Modelled: 57 Confidence: 58.4% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans Phyre2 PDB 2cz4 chain A domain 1 Region: 215 - 271 Aligned: 55 Modelled: 57 Confidence: 42.2% Identity: 13% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 PDB 2cca chain A Region: 23 - 36 Aligned: 13 Modelled: 14 Confidence: 34.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:peroxidase/catalase t; PDBTitle: crystal structure of the catalase-peroxidase (katg) and2 s315t mutant from mycobacterium tuberculosis Phyre2 PDB 2rd5 chain D Region: 217 - 273 Aligned: 57 Modelled: 57 Confidence: 29.4% Identity: 21% PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana Phyre2 PDB 1qy7 chain A Region: 217 - 273 Aligned: 57 Modelled: 57 Confidence: 28.8% Identity: 18% Fold: Ferredoxin-like Superfamily: GlnB-like Family: Prokaryotic signal transducing protein Phyre2 1 c2zvyB_ 2 c3khnB_ 3 c2zovA_ 4 c2l26A_ 5 c3cyqM_ 6 c2k1sA_ 7 c3ldtA_ 8 c2kgwA_ 9 c3td4D_ 10 d2aizp1 11 d2hqsc1 12 d1r1ma_ 13 c1r1mA_ 14 c3oonA_ 15 c2zf8A_ 16 c3l7pA_ 17 d2cz4a1 18 c2ccaA_ 19 c2rd5D_ 20 d1qy7a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2zvyB_ 100.0 94 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 2 c3khnB_ 100.0 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 3 c2zovA_ 100.0 91 PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i) 4 c2l26A_ 100.0 27 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 5 c3cyqM_ 100.0 21 PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid 6 c2k1sA_ 100.0 21 PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. 7 c3ldtA_ 99.9 19 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila 8 c2kgwA_ 99.9 26 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 9 c3td4D_ 99.9 25 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 10 d2aizp1 99.9 29 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 11 d2hqsc1 99.9 24 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 12 d1r1ma_ 99.9 21 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 13 c1r1mA_ 99.9 21 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis 14 c3oonA_ 99.9 24 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 15 c2zf8A_ 99.5 18 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 16 c3l7pA_ 58.4 13 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 17 d2cz4a1 42.2 13 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 18 c2ccaA_ 34.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxidase/catalase t; PDBTitle: crystal structure of the catalase-peroxidase (katg) and2 s315t mutant from mycobacterium tuberculosis 19 c2rd5D_ 29.4 21 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 20 d1qy7a_ 28.8 18 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 21 c2b2qB_ not modelled 26.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of native catalase-peroxidase katg at2 ph7.5 22 c3mhyC_ not modelled 26.0 18 PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure 23 c2fxhB_ not modelled 25.7 23 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase protein; PDBTitle: crystal structure of katg at ph 6.5 24 c1itkB_ not modelled 25.4 21 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from haloarcula2 marismortui 25 c2j9dG_ not modelled 24.8 20 PDB header:membrane transport Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake 26 d2ns1b1 not modelled 23.9 18 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 27 d2h8pc1 not modelled 22.5 13 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 28 d2piia_ not modelled 22.0 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 29 c1skhA_ not modelled 21.7 30 PDB header:unknown function Chain: A: PDB Molecule:major prion protein 2; PDBTitle: n-terminal (1-30) of bovine prion protein 30 d2axla1 not modelled 21.7 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 31 d1saza1 not modelled 17.3 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 32 c3o8wA_ not modelled 17.1 11 PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 33 d1ofda2 not modelled 17.1 34 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 34 c1ub2A_ not modelled 14.7 33 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from synechococcus pcc 7942 35 d2ccaa1 not modelled 14.0 33 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 36 d1hwua_ not modelled 13.6 26 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 37 d1e5ma2 not modelled 13.3 12 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 38 d1tqya2 not modelled 13.3 16 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 39 c3ncpD_ not modelled 13.1 16 PDB header:signaling protein Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2); PDBTitle: glnk2 from archaeoglobus fulgidus 40 d1vfja_ not modelled 13.0 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 41 d1z2la1 not modelled 12.6 14 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 42 d1ul3a_ not modelled 11.6 20 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 43 d1ub2a2 not modelled 10.5 22 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 44 d1r3na1 not modelled 10.3 14 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 45 d1danl3 not modelled 10.3 67 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 46 d1rbli_ not modelled 10.0 17 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 47 c3mk7F_ not modelled 9.7 22 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 48 c2xqoA_ not modelled 9.3 40 PDB header:hydrolase Chain: A: PDB Molecule:cellulosome enzyme, dockerin type i; PDBTitle: ctcel124: a cellulase from clostridium thermocellum 49 c3bzqA_ not modelled 9.1 19 PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis 50 d1nh2a1 not modelled 9.1 16 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 51 c2kv5A_ not modelled 9.0 33 PDB header:toxin Chain: A: PDB Molecule:putative uncharacterized protein rnai; PDBTitle: solution structure of the par toxin fst in dpc micelles 52 d2gfva2 not modelled 8.9 18 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 53 d2ccaa2 not modelled 8.7 22 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 54 c1yr2A_ not modelled 8.6 21 PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity 55 d1u5ta2 not modelled 8.4 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 56 d1oywa1 not modelled 8.1 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 57 c3bl6A_ not modelled 8.0 10 PDB header:hydrolase Chain: A: PDB Molecule:5'-methylthioadenosine nucleosidase/s- PDBTitle: crystal structure of staphylococcus aureus 5'-2 methylthioadenosine/s-adenosylhomocysteine nucleosidase in3 complex with formycin a 58 d1itka1 not modelled 7.9 50 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 59 d1ub2a1 not modelled 7.8 33 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 60 d1mwva1 not modelled 7.8 33 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 61 c2oghA_ not modelled 7.7 9 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1; PDBTitle: solution structure of yeast eif1 62 c3bzjA_ not modelled 7.7 19 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 63 d1itka2 not modelled 7.5 23 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 64 d1xmeb2 not modelled 7.4 37 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 65 d1jqna_ not modelled 7.2 16 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 66 c2q3vB_ not modelled 7.0 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein at2g34160; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g34160 67 d1v8da_ not modelled 6.8 8 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Hypothetical protein TT1679 68 d2juza1 not modelled 6.8 22 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 69 d1cdwa2 not modelled 6.7 23 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 70 d2qtia1 not modelled 6.6 25 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 71 c2imoA_ not modelled 6.6 12 PDB header:hydrolase Chain: A: PDB Molecule:allantoate amidohydrolase; PDBTitle: crystal structure of allantoate amidohydrolase from escherichia coli2 at ph 4.6 72 d1mwva2 not modelled 6.3 22 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 73 d2auna2 not modelled 6.2 26 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:LD-carboxypeptidase A N-terminal domain-like 74 c3rrwB_ not modelled 6.2 44 PDB header:plant protein Chain: B: PDB Molecule:thylakoid lumenal 29 kda protein, chloroplastic; PDBTitle: crystal structure of the tl29 protein from arabidopsis thaliana 75 d1uc8a1 not modelled 6.1 32 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 76 d1cdwa1 not modelled 6.1 16 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 77 d2jrxa1 not modelled 6.0 19 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 78 d2cu3a1 not modelled 5.8 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 79 d2v7fa1 not modelled 5.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rps19E-like 80 c3g23A_ not modelled 5.5 25 PDB header:hydrolase Chain: A: PDB Molecule:ld-carboxypeptidase a; PDBTitle: crystal structure of a ld-carboxypeptidase a (saro_1426) from2 novosphingobium aromaticivorans dsm at 1.89 a resolution 81 c3eyiB_ not modelled 5.5 28 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 82 d1jqoa_ not modelled 5.4 20 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 83 c1jqoA_ not modelled 5.4 20 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 84 d2if1a_ not modelled 5.4 26 Fold:eIF1-like Superfamily:eIF1-like Family:eIF1-like 85 c3iumA_ not modelled 5.3 23 PDB header:hydrolase Chain: A: PDB Molecule:prolyl endopeptidase; PDBTitle: appep_wtx opened state 86 d2juwa1 not modelled 5.3 25 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 87 d1j3na2 not modelled 5.3 19 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 88 c2latA_ not modelled 5.2 7 PDB header:membrane protein Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein PDBTitle: solution structure of a human minimembrane protein ost4 89 c2h3oA_ not modelled 5.2 17 PDB header:membrane protein Chain: A: PDB Molecule:merf; PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices 90 c1qysA_ not modelled 5.1 13 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0