Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	P	V	K	P	P	R	I	N	G	R	V	P	V	L	S	A	Q	E	A	V	N	Y	I	P	D	E	A	T	L	C	V	L	G	A	G	G	G	I	L	E	A	T	T	L	I	T	A	L	A	D	K	Y	K	Q	T	Q	T	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?		?																																									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	N	L	S	I	I	S	P	T	G	L	G	D	R	A	D	R	G	I	S	P	L	A	Q	E	G	L	V	K	W	A	L	C	G	H	W	G	Q	S	P	R	I	S	E	L	A	E	Q	N	K	I	I	A	Y	N	Y	P	Q	G	V
Secondary structure
SS confidence
Disorder												?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	T	Q	T	L	R	A	A	A	A	H	Q	P	G	I	I	S	D	I	G	I	G	T	F	V	D	P	R	Q	Q	G	G	K	L	N	E	V	T	K	E	D	L	I	K	L	V	E	F	D	N	K	E	Y	L	Y	Y	K	A	I	A
Secondary structure
SS confidence
Disorder																						?					?	?	?	?	?		?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	D	I	A	F	I	R	A	T	T	C	D	S	E	G	Y	A	T	F	E	D	E	V	M	Y	L	D	A	L	V	I	A	Q	A	V	H	N	N	G	G	I	V	M	M	Q	V	Q	K	M	V	K	K	A	T	L	H	P	K	S	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	I	P	G	Y	L	V	D	I	V	V	V	D	P	D	Q	T	Q	L	Y	G	G	A	P	V	N	R	F	I	S	G	D	F	T	L	D	D	S	T	K	L	S	L	P	L	N	Q	R	K	L	V	A	R	R	A	L	F	E	M	R
Secondary structure
SS confidence
Disorder																																		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	G	A	V	G	N	V	G	V	G	I	A	D	G	I	G	L	V	A	R	E	E	G	C	A	D	D	F	I	L	T	V	E	T	G	P	I	G	G	I	T	S	Q	G	I	A	F	G	A	N	V	N	T	R	A	I	L	D	M	T
Secondary structure
SS confidence
Disorder																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		S	Q	F	D	F	Y	H	G	G	G	L	D	V	C	Y	L	S	F	A	E	V	D	Q	H	G	N	V	G	V	H	K	F	N	G	K	I	M	G	T	G	G	F	I	D	I	S	A	T	S	K	K	I	I	F	C	G	T	L	T	A
Secondary structure
SS confidence
Disorder																																	?	?	?																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		G	S	L	K	T	E	I	T	D	G	K	L	N	I	V	Q	E	G	R	V	K	K	F	I	R	E	L	P	E	I	T	F	S	G	K	I	A	L	E	R	G	L	D	V	R	Y	I	T	E	R	A	V	F	T	L	K	E	D	G	L
Secondary structure
SS confidence
Disorder											?																	?							?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Sequence		H	L	I	E	I	A	P	G	V	D	L	Q	K	D	I	L	D	K	M	D	F	T	P	V	I	S	P	E	L	K	L	M	D	E	R	L	F	I	D	A	A	M	G	F	V	L	P	E	A	A	H
Secondary structure
SS confidence
Disorder																																								?		?	?			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ahv chain C Region: 4 - 529 Aligned: 512 Modelled: 526 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 Phyre2 PDB 1ooy chain A Region: 13 - 514 Aligned: 443 Modelled: 458 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart Phyre2 PDB 2ahu chain A domain 2 Region: 4 - 275 Aligned: 272 Modelled: 272 Confidence: 100.0% Identity: 98% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 2ahu chain A domain 1 Region: 283 - 529 Aligned: 242 Modelled: 247 Confidence: 100.0% Identity: 97% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 3gk7 chain A Region: 12 - 528 Aligned: 403 Modelled: 427 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum Phyre2 PDB 2g39 chain A Region: 12 - 522 Aligned: 409 Modelled: 407 Confidence: 100.0% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa Phyre2 PDB 2oas chain A Region: 15 - 512 Aligned: 384 Modelled: 411 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. Phyre2 PDB 2hj0 chain A Region: 1 - 514 Aligned: 418 Modelled: 440 Confidence: 100.0% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). Phyre2 PDB 2nvv chain F Region: 14 - 524 Aligned: 422 Modelled: 425 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. Phyre2 PDB 1xr4 chain B Region: 1 - 521 Aligned: 410 Modelled: 421 Confidence: 100.0% Identity: 20% PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] Phyre2 PDB 3eh7 chain A Region: 12 - 500 Aligned: 351 Modelled: 367 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 Phyre2 PDB 1ooy chain A domain 2 Region: 13 - 262 Aligned: 237 Modelled: 250 Confidence: 100.0% Identity: 25% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 1poi chain A Region: 13 - 268 Aligned: 239 Modelled: 251 Confidence: 100.0% Identity: 20% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 3d3u chain A Region: 12 - 511 Aligned: 345 Modelled: 380 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 Phyre2 PDB 3cdk chain A Region: 13 - 267 Aligned: 228 Modelled: 239 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis Phyre2 PDB 3rrl chain C Region: 13 - 263 Aligned: 221 Modelled: 235 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 Phyre2 PDB 1poi chain B Region: 286 - 526 Aligned: 218 Modelled: 220 Confidence: 100.0% Identity: 19% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 1k6d chain A Region: 11 - 255 Aligned: 216 Modelled: 227 Confidence: 100.0% Identity: 28% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 1ooy chain A domain 1 Region: 286 - 514 Aligned: 204 Modelled: 210 Confidence: 100.0% Identity: 25% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase beta subunit-like Phyre2 PDB 3cdk chain D Region: 286 - 506 Aligned: 187 Modelled: 201 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis Phyre2 1 c2ahvC_ 2 c1ooyA_ 3 d2ahua2 4 d2ahua1 5 c3gk7A_ 6 c2g39A_ 7 c2oasA_ 8 c2hj0A_ 9 c2nvvF_ 10 c1xr4B_ 11 c3eh7A_ 12 d1ooya2 13 d1poia_ 14 c3d3uA_ 15 c3cdkA_ 16 c3rrlC_ 17 d1poib_ 18 d1k6da_ 19 d1ooya1 20 c3cdkD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ahvC_ 100.0 100 PDB header:transferase Chain: C: PDB Molecule:putative enzyme ydif; PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1 2 c1ooyA_ 100.0 25 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase, PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart 3 d2ahua2 100.0 98 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 4 d2ahua1 100.0 97 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 5 c3gk7A_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 6 c2g39A_ 100.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:acetyl-coa hydrolase; PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa 7 c2oasA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. 8 c2hj0A_ 100.0 20 PDB header:lyase Chain: A: PDB Molecule:putative citrate lyase, alfa subunit; PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target). 9 c2nvvF_ 100.0 16 PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. 10 c1xr4B_ 100.0 20 PDB header:hydrolase/transferase Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase; PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium] 11 c3eh7A_ 100.0 23 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 12 d1ooya2 100.0 25 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 13 d1poia_ 100.0 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 14 c3d3uA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 15 c3cdkA_ 100.0 26 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 16 c3rrlC_ 100.0 26 PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 17 d1poib_ 100.0 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 18 d1k6da_ 100.0 28 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 19 d1ooya1 100.0 25 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 20 c3cdkD_ 100.0 24 PDB header:transferase Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 21 d2g39a1 not modelled 100.0 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 22 d2g39a2 not modelled 100.0 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 23 d1xr4a2 not modelled 100.0 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 24 d1xr4a1 not modelled 99.9 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 25 c3l7oB_ not modelled 98.1 21 PDB header:isomerase Chain: B: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159 26 c3hheA_ not modelled 98.0 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae 27 c1lk5C_ not modelled 98.0 22 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 28 c3kwmC_ not modelled 97.9 19 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 29 d1m0sa1 not modelled 97.9 19 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 30 c1m0sA_ not modelled 97.8 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 31 c2f8mB_ not modelled 97.7 18 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 32 c1lkzB_ not modelled 97.6 19 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 33 c2pjmA_ not modelled 97.5 19 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 34 d1lk5a1 not modelled 97.4 23 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 35 c1uj6A_ not modelled 97.3 20 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 36 d1uj4a1 not modelled 97.1 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 37 c1xtzA_ not modelled 96.3 24 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes 38 c3u7jA_ not modelled 96.2 24 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis 39 d1o8bb1 not modelled 93.9 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 40 c2yvkA_ not modelled 93.1 11 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 41 d1t5oa_ not modelled 92.8 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 42 c1pt9B_ not modelled 83.8 20 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 43 c3ecsD_ not modelled 81.5 15 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 44 d1vb5a_ not modelled 81.1 18 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 45 d1pnoa_ not modelled 80.9 28 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 46 d1t9ka_ not modelled 72.4 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 47 d1d4oa_ not modelled 71.2 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 48 d1o8ba1 not modelled 66.1 22 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 49 c3a11D_ not modelled 61.8 13 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 50 c3mvnA_ not modelled 33.7 21 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp 51 c3nzeB_ not modelled 30.6 17 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family; PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1. 52 c2gezF_ not modelled 26.1 36 PDB header:hydrolase Chain: F: PDB Molecule:l-asparaginase beta subunit; PDBTitle: crystal structure of potassium-independent plant asparaginase 53 c2gacD_ not modelled 25.8 28 PDB header:hydrolase Chain: D: PDB Molecule:glycosylasparaginase; PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum 54 c2a8lB_ not modelled 19.0 36 PDB header:hydrolase Chain: B: PDB Molecule:threonine aspartase 1; PDBTitle: crystal structure of human taspase1 (t234a mutant) 55 d2gnpa1 not modelled 18.5 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 56 c1k2xB_ not modelled 18.2 28 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene 57 c1k2xD_ not modelled 18.2 28 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene 58 c1jn9D_ not modelled 18.2 28 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene 59 c1t3mB_ not modelled 17.8 28 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 60 c1t3mD_ not modelled 17.8 28 PDB header:hydrolase Chain: D: PDB Molecule:putative l-asparaginase; PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli 61 c1jn9B_ not modelled 17.8 28 PDB header:hydrolase Chain: B: PDB Molecule:putative l-asparaginase; PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene 62 c1dbgA_ not modelled 17.4 6 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 63 d2r5fa1 not modelled 15.7 4 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 64 d3efba1 not modelled 14.7 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 65 d1gmxa_ not modelled 14.5 9 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Single-domain sulfurtransferase 66 c2zalD_ not modelled 14.1 28 PDB header:hydrolase Chain: D: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate 67 d2fvga1 not modelled 14.0 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 68 d1ofla_ not modelled 13.1 6 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Chondroitinase B 69 d1t3ka_ not modelled 13.0 0 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Cell cycle control phosphatase, catalytic domain 70 d1gwma_ not modelled 12.0 11 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 29 carbohydrate binding module, CBM29 71 c2zalB_ not modelled 11.0 28 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate 72 c2w48D_ not modelled 10.4 13 PDB header:transcription Chain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae 73 d1kqfa1 not modelled 10.2 22 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 74 c3kv1A_ not modelled 9.9 22 PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor; PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri 75 d1vlfm1 not modelled 9.6 11 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 76 c3hy4A_ not modelled 9.3 14 PDB header:ligase Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase; PDBTitle: structure of human mthfs with n5-iminium phosphate 77 d2grea1 not modelled 9.2 24 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 78 d2nyga1 not modelled 8.9 18 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Aminoglycoside 3-N-acetyltransferase-like 79 d2jioa1 not modelled 8.7 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 80 c2bruC_ not modelled 8.2 15 PDB header:oxidoreductase Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase 81 d1h0ha1 not modelled 8.2 17 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 82 c2zfnA_ not modelled 8.0 18 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: self-acetylation mediated histone h3 lysine 56 acetylation by rtt109 83 c3d35A_ not modelled 7.8 18 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: crystal structure of rtt109-ac-coa complex 84 d1vhea1 not modelled 7.7 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 85 c1p4vA_ not modelled 7.4 32 PDB header:hydrolase Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine 86 d1ogya1 not modelled 7.2 11 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 87 d1y5ia1 not modelled 7.2 33 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 88 d1u0fa_ not modelled 7.1 15 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 89 d1l7da2 not modelled 7.0 31 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:L-alanine dehydrogenase-like 90 d1yloa1 not modelled 7.0 13 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 91 d1eu1a1 not modelled 6.9 28 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 92 c2o0mA_ not modelled 6.8 15 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, sorc family; PDBTitle: the crystal structure of the putative sorc family transcriptional2 regulator from enterococcus faecalis 93 d2o0ma1 not modelled 6.8 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:SorC sugar-binding domain-like 94 d1pjca2 not modelled 6.5 18 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:L-alanine dehydrogenase-like 95 d1y0ya1 not modelled 6.4 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Aminopeptidase/glucanase lid domain Family:Aminopeptidase/glucanase lid domain 96 d1ru4a_ not modelled 6.4 10 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Pectate transeliminase 97 c3pe3D_ not modelled 6.1 9 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 98 c3cz7A_ not modelled 6.1 18 PDB header:replication Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: molecular basis for the autoregulation of the protein acetyl2 transferase rtt109 99 c2ri0B_ not modelled 5.9 14 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0