Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	P	F	R	R	N	V	L	A	F	A	A	L	L	A	L	S	S	P	V	L	A	G	K	L	A	I	V	I	D	D	F	G	Y	R	P	H	N	E	N	Q	V	L	A	M	P	S	A	I	S	V	A	V	L	P	D	S	P	H
Secondary structure
SS confidence
Disorder		?	?	?											?	?	?	?	?	?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	R	E	M	A	T	K	A	H	N	S	G	H	E	V	L	I	H	L	P	M	A	P	L	S	K	Q	P	L	E	K	N	T	L	R	P	E	M	S	S	D	E	I	E	R	I	I	R	S	A	V	N	N	V	P	Y	A	V	G	I
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	N	H	M	G	S	K	M	T	S	N	L	F	G	M	Q	K	V	M	Q	A	L	E	R	Y	N	L	Y	F	L	D	S	V	T	I	G	N	T	Q	A	M	R	A	A	Q	G	T	G	V	K	V	I	K	R	K	V	F	L	D	D
Secondary structure
SS confidence
Disorder										?	?																										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	Q	N	E	A	D	I	R	V	Q	F	N	R	A	I	D	L	A	R	R	N	G	S	T	I	A	I	G	H	P	H	P	A	T	V	R	V	L	Q	Q	M	V	Y	N	L	P	P	D	I	T	L	V	K	A	S	S	L	L	N	E
Secondary structure
SS confidence
Disorder				?																																																								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	Q	V	D	T	S	T	P	P	K	N	A	V	P	D	A	P	R	N	P	F	R	G	V	K	L	C	K	P	K	K	P	I	E	P	V	Y	A	N	R	F	F	E	V	L	S	E	S	I	S	Q	S	T	L	I	V	Y	F	Q	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Sequence		Q	W	Q	G	W	G	K	Q	P	E	A	A	K	F	N	A	S	A	N
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qv5 chain A Region: 10 - 238 Aligned: 229 Modelled: 229 Confidence: 100.0% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 Phyre2 PDB 2nly chain A domain 1 Region: 24 - 238 Aligned: 209 Modelled: 215 Confidence: 100.0% Identity: 30% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: Divergent polysaccharide deacetylase Phyre2 PDB 2vyo chain A Region: 18 - 240 Aligned: 190 Modelled: 193 Confidence: 98.8% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi Phyre2 PDB 2c1i chain A Region: 22 - 241 Aligned: 177 Modelled: 186 Confidence: 98.4% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. Phyre2 PDB 2iw0 chain A domain 1 Region: 16 - 242 Aligned: 193 Modelled: 193 Confidence: 98.2% Identity: 15% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 1w17 chain A Region: 19 - 238 Aligned: 186 Modelled: 197 Confidence: 98.1% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. Phyre2 PDB 2iw0 chain A Region: 16 - 242 Aligned: 198 Modelled: 199 Confidence: 98.1% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum Phyre2 PDB 2c1i chain A domain 1 Region: 26 - 241 Aligned: 174 Modelled: 182 Confidence: 98.1% Identity: 20% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 1ny1 chain A Region: 19 - 238 Aligned: 187 Modelled: 186 Confidence: 97.9% Identity: 15% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2j13 chain A domain 1 Region: 19 - 239 Aligned: 169 Modelled: 169 Confidence: 97.9% Identity: 13% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2w3z chain A Region: 26 - 234 Aligned: 178 Modelled: 179 Confidence: 97.8% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase Phyre2 PDB 2c71 chain A domain 1 Region: 26 - 257 Aligned: 190 Modelled: 196 Confidence: 97.8% Identity: 19% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 2cc0 chain A domain 1 Region: 21 - 241 Aligned: 181 Modelled: 187 Confidence: 97.8% Identity: 14% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: NodB-like polysaccharide deacetylase Phyre2 PDB 3rxz chain A Region: 37 - 256 Aligned: 206 Modelled: 210 Confidence: 97.2% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:polysaccharide deacetylase; PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis Phyre2 PDB 2i5i chain A domain 1 Region: 25 - 210 Aligned: 183 Modelled: 186 Confidence: 96.8% Identity: 19% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: YdjC-like Phyre2 PDB 3qbu chain D Region: 37 - 239 Aligned: 189 Modelled: 193 Confidence: 96.6% Identity: 14% PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori Phyre2 PDB 3s6o chain D Region: 37 - 237 Aligned: 185 Modelled: 191 Confidence: 96.3% Identity: 14% PDB header:hydrolase Chain: D: PDB Molecule:polysaccharide deacetylase family protein; PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei Phyre2 PDB 1z7a chain A domain 1 Region: 37 - 237 Aligned: 188 Modelled: 190 Confidence: 95.9% Identity: 10% Fold: 7-stranded beta/alpha barrel Superfamily: Glycoside hydrolase/deacetylase Family: PA1517-like Phyre2 PDB 2q6t chain B Region: 94 - 209 Aligned: 110 Modelled: 116 Confidence: 88.9% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer Phyre2 PDB 2vye chain A Region: 94 - 209 Aligned: 113 Modelled: 116 Confidence: 83.6% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex Phyre2 PDB 3cix chain A Region: 98 - 282 Aligned: 165 Modelled: 165 Confidence: 50.8% Identity: 16% PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate Phyre2 1 c2qv5A_ 2 d2nlya1 3 c2vyoA_ 4 c2c1iA_ 5 d2iw0a1 6 c1w17A_ 7 c2iw0A_ 8 d2c1ia1 9 d1ny1a_ 10 d2j13a1 11 c2w3zA_ 12 d2c71a1 13 d2cc0a1 14 c3rxzA_ 15 d2i5ia1 16 c3qbuD_ 17 c3s6oD_ 18 d1z7aa1 19 c2q6tB_ 20 c2vyeA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 c3cixA_ 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qv5A_ 100.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2773; PDBTitle: crystal structure of uncharacterized protein atu2773 from2 agrobacterium tumefaciens c58 2 d2nlya1 100.0 30 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase 3 c2vyoA_ 98.8 15 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 4 c2c1iA_ 98.4 22 PDB header:hydrolase Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase; PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant. 5 d2iw0a1 98.2 15 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 6 c1w17A_ 98.1 13 PDB header:hydrolase Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa; PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase. 7 c2iw0A_ 98.1 15 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 8 d2c1ia1 98.1 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 9 d1ny1a_ 97.9 15 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 10 d2j13a1 97.9 13 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 11 c2w3zA_ 97.8 14 PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase 12 d2c71a1 97.8 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 13 d2cc0a1 97.8 14 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 14 c3rxzA_ 97.2 14 PDB header:hydrolase Chain: A: PDB Molecule:polysaccharide deacetylase; PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis 15 d2i5ia1 96.8 19 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:YdjC-like 16 c3qbuD_ 96.6 14 PDB header:hydrolase Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori 17 c3s6oD_ 96.3 14 PDB header:hydrolase Chain: D: PDB Molecule:polysaccharide deacetylase family protein; PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei 18 d1z7aa1 95.9 10 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:PA1517-like 19 c2q6tB_ 88.9 15 PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer 20 c2vyeA_ 83.6 14 PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex 21 d1v6ta_ not modelled 80.7 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 22 c2dt8A_ not modelled 79.8 12 PDB header:lipid binding protein Chain: A: PDB Molecule:degv family protein; PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus 23 c3qjaA_ not modelled 78.2 15 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form 24 c2recB_ not modelled 77.9 9 PDB header:helicase PDB COMPND: 25 d3dhwc1 not modelled 77.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 26 c3lupA_ not modelled 77.2 10 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae 27 d1mgpa_ not modelled 74.5 7 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 28 c1mgpA_ not modelled 74.5 7 PDB header:lipid binding protein Chain: A: PDB Molecule:hypothetical protein tm841; PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function 29 c2q5cA_ not modelled 72.1 16 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 30 c2e67D_ not modelled 71.9 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein tthb029; PDBTitle: crystal structure of the hypothetical protein tthb029 from thermus2 thermophilus hb8 31 c3ktsA_ not modelled 69.8 17 PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 32 c2pjuD_ not modelled 67.8 22 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 33 c3uoaB_ not modelled 67.3 21 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:mucosa-associated lymphoid tissue lymphoma translocation PDBTitle: crystal structure of the malt1 paracaspase (p21 form) 34 d1jz8a5 not modelled 66.7 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 35 d2pjua1 not modelled 63.6 20 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 36 d2gwga1 not modelled 61.2 9 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:PP1699/LP2961-like 37 d1cr2a_ not modelled 60.3 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 38 c3nyiA_ not modelled 59.0 18 PDB header:lipid binding protein Chain: A: PDB Molecule:fat acid-binding protein; PDBTitle: the crystal structure of a fat acid (stearic acid)-binding protein2 from eubacterium ventriosum atcc 27560. 39 d2f6ka1 not modelled 58.6 11 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:PP1699/LP2961-like 40 c2c3zA_ not modelled 58.2 14 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus 41 d1pzxa_ not modelled 57.4 13 Fold:DAK1/DegV-like Superfamily:DAK1/DegV-like Family:DegV-like 42 c3bgwD_ not modelled 57.1 13 PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase 43 d1i4na_ not modelled 56.7 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 44 c2e21A_ not modelled 53.9 13 PDB header:ligase Chain: A: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils in a complex with amppnp from aquifex2 aeolicus. 45 c2g7zB_ not modelled 53.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein spy1493; PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids 46 d1a53a_ not modelled 53.7 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 47 c1vlvA_ not modelled 51.0 14 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution 48 c3cixA_ 50.8 16 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 49 d1vjia_ not modelled 49.5 21 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 50 d1piia2 not modelled 48.7 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 51 c3ij6A_ not modelled 48.0 11 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized metal-dependent hydrolase; PDBTitle: crystal structure of an uncharacterized metal-dependent2 hydrolase from lactobacillus acidophilus 52 c3fdiA_ not modelled 47.6 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560. 53 c2fdsA_ not modelled 46.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:orotidine-monophosphate-decarboxylase; PDBTitle: crystal structure of plasmodium berghei orotidine 5'-2 monophosphate decarboxylase (ortholog of plasmodium3 falciparum pf10_0225) 54 d2fdsa1 not modelled 46.2 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 55 c3uj2C_ not modelled 45.5 21 PDB header:lyase Chain: C: PDB Molecule:enolase 1; PDBTitle: crystal structure of an enolase from anaerostipes caccae (efi target2 efi-502054) with bound mg and sulfate 56 c3hdtB_ not modelled 45.4 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940 57 c3fysA_ not modelled 45.4 13 PDB header:fatty acid-binding protein Chain: A: PDB Molecule:protein degv; PDBTitle: crystal structure of degv, a fatty acid binding protein2 from bacillus subtilis 58 d1ni5a1 not modelled 45.2 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 59 d2dfaa1 not modelled 45.1 15 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 60 c2aamA_ not modelled 43.7 14 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein tm1410; PDBTitle: crystal structure of a putative glycosidase (tm1410) from thermotoga2 maritima at 2.20 a resolution 61 d2aama1 not modelled 43.7 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:TM1410-like 62 c3c8fA_ not modelled 43.4 8 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet 63 c3r89A_ not modelled 42.3 9 PDB header:lyase Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase; PDBTitle: crystal structure of orotidine 5-phosphate decarboxylase from2 anaerococcus prevotii dsm 20548 64 c3cmgA_ not modelled 41.5 12 PDB header:hydrolase Chain: A: PDB Molecule:putative beta-galactosidase; PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis 65 c2xt6B_ not modelled 40.6 17 PDB header:lyase Chain: B: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of mycobacterium smegmatis alpha-ketoglutarate2 decarboxylase homodimer (orthorhombic form) 66 c2k6xA_ not modelled 39.3 17 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 67 c3ngkA_ not modelled 39.2 21 PDB header:unknown function Chain: A: PDB Molecule:propanediol utilization protein pdua; PDBTitle: pdua from salmonella enterica typhimurium 68 d2ffca1 not modelled 38.8 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 69 c3lpgA_ not modelled 38.8 10 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-glucuronidase; PDBTitle: structure of e. coli beta-glucuronidase bound with a novel, potent2 inhibitor 3-(2-fluorophenyl)-1-(2-hydroxyethyl)-1-((6-methyl-2-oxo-1,3 2-dihydroquinolin-3-yl)methyl)urea 70 d1vc4a_ not modelled 38.7 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 71 d2ihta3 not modelled 38.6 12 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 72 c3sggA_ not modelled 36.2 18 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_2193) from2 bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution 73 d2q02a1 not modelled 35.7 12 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 74 d1wy5a1 not modelled 35.5 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 75 d2nu7b1 not modelled 35.4 13 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 76 c2vf7B_ not modelled 35.4 15 PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans 77 c3otrC_ not modelled 35.4 15 PDB header:lyase Chain: C: PDB Molecule:enolase; PDBTitle: 2.75 angstrom crystal structure of enolase 1 from toxoplasma gondii 78 d2ffea1 not modelled 35.3 11 Fold:CofD-like Superfamily:CofD-like Family:CofD-like 79 d1o98a1 not modelled 34.6 23 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 80 d1j5ta_ not modelled 34.5 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 81 d1yq2a5 not modelled 34.1 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 82 d2ptza1 not modelled 33.4 18 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 83 d1xi9a_ not modelled 33.2 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 84 c2pa6A_ not modelled 32.9 15 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of mj0232 from methanococcus jannaschii 85 c2yciX_ not modelled 32.8 19 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 86 d1nlfa_ not modelled 32.5 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 87 c2ztsB_ not modelled 32.4 12 PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 88 d2g0wa1 not modelled 31.5 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 89 d2akza1 not modelled 31.2 17 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 90 c3gkaB_ not modelled 30.7 17 PDB header:oxidoreductase Chain: B: PDB Molecule:n-ethylmaleimide reductase; PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei 91 d1v43a3 not modelled 30.0 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 92 c1xp8A_ not modelled 28.6 10 PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s" 93 c3qocD_ not modelled 27.0 12 PDB header:hydrolase Chain: D: PDB Molecule:putative metallopeptidase; PDBTitle: crystal structure of n-terminal domain (creatinase/prolidase like2 domain) of putative metallopeptidase from corynebacterium diphtheriae 94 d1m5wa_ not modelled 26.9 20 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 95 c3tqpA_ not modelled 26.8 15 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: structure of an enolase (eno) from coxiella burnetii 96 d1ru8a_ not modelled 26.7 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 97 c3i6pF_ not modelled 26.7 22 PDB header:structural protein Chain: F: PDB Molecule:ethanolamine utilization protein eutm; PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm 98 c1l8pC_ not modelled 26.0 13 PDB header:lyase Chain: C: PDB Molecule:enolase 1; PDBTitle: mg-phosphonoacetohydroxamate complex of s39a yeast enolase 1 99 d1iyxa1 not modelled 26.0 21 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 100 c3ox4D_ not modelled 25.7 12 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor 101 d2al1a1 not modelled 25.5 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:Enolase 102 d1oxxk2 not modelled 25.4 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 103 c1knwA_ not modelled 25.3 10 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase 104 c3obaA_ not modelled 25.3 18 PDB header:hydrolase Chain: A: PDB Molecule:beta-galactosidase; PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis 105 d1vpla_ not modelled 25.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 106 c3bijC_ not modelled 25.0 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein gsu0716; PDBTitle: crystal structure of protein gsu0716 from geobacter2 sulfurreducens. northeast structural genomics target gsr13 107 c3pl5A_ not modelled 24.7 10 PDB header:lipid binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: fatty acid binding protein 108 c1o98A_ not modelled 23.2 23 PDB header:isomerase Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate 109 c3eglC_ not modelled 23.2 13 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:degv family protein; PDBTitle: crystal structure of degv family protein cg2579 from corynebacterium2 glutamicum 110 c2we7A_ not modelled 23.2 14 PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis rv0376c2 homologue from mycobacterium smegmatis 111 c2fymA_ not modelled 22.8 19 PDB header:lyase Chain: A: PDB Molecule:enolase; PDBTitle: crystal structure of e. coli enolase complexed with the2 minimal binding segment of rnase e. 112 c1q57G_ not modelled 22.7 15 PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 113 c3ke8A_ not modelled 22.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex 114 d1efvb_ not modelled 21.9 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 115 d1n0wa_ not modelled 21.3 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 116 c1w8gA_ not modelled 21.2 12 PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs 117 d1chma1 not modelled 20.9 25 Fold:Ribonuclease H-like motif Superfamily:Creatinase/prolidase N-terminal domain Family:Creatinase/prolidase N-terminal domain 118 d1b0ua_ not modelled 20.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 119 c3mv14_ not modelled 20.5 17 PDB header:hydrolase Chain: 4: PDB Molecule:beta-galactosidase; PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium 120 c3ms5A_ not modelled 20.4 10 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0