Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP62617
DateThu Jan 5 12:07:42 GMT 2012
Unique Job IDd615c0b3465af989

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3f0gA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp
Confidence and coverage
Confidence:100.0% Coverage: 99%
157 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKL
Secondary structure 


















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Disorder  ?

??






















































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   .........70.........80.........90.........100.........110.........120
Sequence  FPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDL
Secondary structure 

















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Disorder 






































?


??














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   .........130.........140.........150.........
Sequence  GCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
Secondary structure 















SS confidence 






































Disorder 















?
??












??????
Disorder confidence 






































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3f0g chain A

3D model

Region: 1 - 157
Aligned: 157
Modelled: 157
Confidence: 100.0%
Identity: 63%
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp

Phyre2

PDB 1t0a chain A

3D model

Region: 1 - 157
Aligned: 157
Modelled: 157
Confidence: 100.0%
Identity: 67%
Fold: Bacillus chorismate mutase-like
Superfamily: IpsF-like
Family: IpsF-like

Phyre2

PDB 1gx1 chain A

3D model

Region: 1 - 156
Aligned: 156
Modelled: 155
Confidence: 100.0%
Identity: 97%
Fold: Bacillus chorismate mutase-like
Superfamily: IpsF-like
Family: IpsF-like

Phyre2

PDB 2pmp chain A

3D model

Region: 1 - 157
Aligned: 157
Modelled: 157
Confidence: 100.0%
Identity: 48%
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana

Phyre2

PDB 1w55 chain A domain 2

3D model

Region: 1 - 156
Aligned: 156
Modelled: 156
Confidence: 100.0%
Identity: 50%
Fold: Bacillus chorismate mutase-like
Superfamily: IpsF-like
Family: IpsF-like

Phyre2

PDB 1w57 chain A

3D model

Region: 1 - 156
Aligned: 156
Modelled: 156
Confidence: 100.0%
Identity: 50%
PDB header:transferase
Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme;
PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn

Phyre2

PDB 1iv3 chain A

3D model

Region: 2 - 155
Aligned: 150
Modelled: 154
Confidence: 100.0%
Identity: 41%
Fold: Bacillus chorismate mutase-like
Superfamily: IpsF-like
Family: IpsF-like

Phyre2

PDB 1vh8 chain A

3D model

Region: 1 - 157
Aligned: 151
Modelled: 157
Confidence: 100.0%
Identity: 77%
Fold: Bacillus chorismate mutase-like
Superfamily: IpsF-like
Family: IpsF-like

Phyre2

PDB 2uzh chain B

3D model

Region: 2 - 157
Aligned: 151
Modelled: 156
Confidence: 100.0%
Identity: 40%
PDB header:lyase
Chain: B: PDB Molecule:2c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: mycobacterium smegmatis 2c-methyl-d-erythritol-2,4-2 cyclodiphosphate synthase (ispf)

Phyre2

PDB 3re3 chain B

3D model

Region: 1 - 156
Aligned: 141
Modelled: 156
Confidence: 100.0%
Identity: 56%
PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis

Phyre2

PDB 3b6n chain A

3D model

Region: 1 - 158
Aligned: 142
Modelled: 143
Confidence: 100.0%
Identity: 41%
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-2 cyclodiphosphate synthase pv003920 from plasmodium vivax

Phyre2

PDB 3fwt chain A

3D model

Region: 92 - 142
Aligned: 51
Modelled: 51
Confidence: 64.2%
Identity: 18%
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: crystal structure of leishmania major mif2

Phyre2

PDB 3b64 chain A

3D model

Region: 108 - 142
Aligned: 35
Modelled: 35
Confidence: 55.2%
Identity: 17%
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major

Phyre2

PDB 1hfo chain A

3D model

Region: 108 - 142
Aligned: 35
Modelled: 35
Confidence: 54.9%
Identity: 14%
Fold: Tautomerase/MIF
Superfamily: Tautomerase/MIF
Family: MIF-related

Phyre2

PDB 2gdg chain A domain 1

3D model

Region: 108 - 142
Aligned: 35
Modelled: 35
Confidence: 54.5%
Identity: 14%
Fold: Tautomerase/MIF
Superfamily: Tautomerase/MIF
Family: MIF-related

Phyre2

PDB 1w25 chain B

3D model

Region: 33 - 120
Aligned: 84
Modelled: 88
Confidence: 53.8%
Identity: 20%
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp

Phyre2

PDB 2os5 chain C

3D model

Region: 108 - 142
Aligned: 35
Modelled: 35
Confidence: 52.1%
Identity: 23%
PDB header:cytokine
Chain: C: PDB Molecule:acemif;
PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum

Phyre2

PDB 2xcz chain A

3D model

Region: 108 - 142
Aligned: 35
Modelled: 35
Confidence: 50.6%
Identity: 17%
PDB header:immune system
Chain: A: PDB Molecule:possible atls1-like light-inducible protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus

Phyre2

PDB 3bbl chain A

3D model

Region: 57 - 92
Aligned: 36
Modelled: 36
Confidence: 37.9%
Identity: 22%
PDB header:regulatory protein
Chain: A: PDB Molecule:regulatory protein of laci family;
PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans

Phyre2

PDB 1s5j chain A domain 2

3D model

Region: 44 - 123
Aligned: 79
Modelled: 80
Confidence: 35.9%
Identity: 10%
Fold: DNA/RNA polymerases
Superfamily: DNA/RNA polymerases
Family: DNA polymerase I

Phyre2
1

c3f0gA_
2

d1t0aa_
3

d1gx1a_
4

c2pmpA_
5

d1w55a2
6

c1w57A_
7

d1iv3a_
8

d1vh8a_
9

c2uzhB_
10

c3re3B_
11

c3b6nA_
12

c3fwtA_
13

c3b64A_
14

d1hfoa_
15

d2gdga1
16

c1w25B_
17

c2os5C_
18

c2xczA_
19

c3bblA_
20

d1s5ja2
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3f0gA_



100.0 63 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: co-crystal structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase with cmp
2d1t0aa_



100.0 67 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
3d1gx1a_



100.0 97 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
4c2pmpA_



100.0 48 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana
5d1w55a2



100.0 50 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
6c1w57A_



100.0 50 PDB header:transferase
Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme;
PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn
7d1iv3a_



100.0 41 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
8d1vh8a_



100.0 77 Fold:Bacillus chorismate mutase-like
Superfamily:IpsF-like
Family:IpsF-like
9c2uzhB_



100.0 40 PDB header:lyase
Chain: B: PDB Molecule:2c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: mycobacterium smegmatis 2c-methyl-d-erythritol-2,4-2 cyclodiphosphate synthase (ispf)
10c3re3B_



100.0 56 PDB header:lyase
Chain: B: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: crystal structure of 2-c-methyl-d-erythritol 2,4-cyclodiphosphate2 synthase from francisella tularensis
11c3b6nA_



100.0 41 PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate
PDBTitle: crystal structure of 2c-methyl-d-erythritol 2,4-2 cyclodiphosphate synthase pv003920 from plasmodium vivax
12c3fwtA_



64.2 18 PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: crystal structure of leishmania major mif2
13c3b64A_



55.2 17 PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
14d1hfoa_



54.9 14 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
15d2gdga1



54.5 14 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
16c1w25B_



53.8 20 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
17c2os5C_



52.1 23 PDB header:cytokine
Chain: C: PDB Molecule:acemif;
PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum
18c2xczA_



50.6 17 PDB header:immune system
Chain: A: PDB Molecule:possible atls1-like light-inducible protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor2 homologue from prochlorococcus marinus
19c3bblA_



37.9 22 PDB header:regulatory protein
Chain: A: PDB Molecule:regulatory protein of laci family;
PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans
20d1s5ja2



35.9 10 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
21d1olta_



not modelled 34.0 17 Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Oxygen-independent coproporphyrinogen III oxidase HemN
22d1wh9a_



not modelled 29.6 15 Fold:Alpha-lytic protease prodomain-like
Superfamily:Prokaryotic type KH domain (KH-domain type II)
Family:Prokaryotic type KH domain (KH-domain type II)
23d2cc0a1



not modelled 27.1 13 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
24d1ru8a_



not modelled 25.5 11 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
25c3caiA_



not modelled 23.5 16 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
26c3hrdE_



not modelled 20.7 26 PDB header:oxidoreductase
Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin
PDBTitle: crystal structure of nicotinate dehydrogenase
27c1xaxA_



not modelled 19.9 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004;
PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae
28d1yh5a1



not modelled 19.8 13 Fold:YggU-like
Superfamily:YggU-like
Family:YggU-like
29d1u6ea2



not modelled 19.0 20 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
30c2ehtA_



not modelled 18.2 29 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of acyl carrier protein from aquifex aeolicus (form2 2)
31c3gacD_



not modelled 17.3 16 PDB header:cytokine
Chain: D: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: structure of mif with hpp
32d1q8ia2



not modelled 17.2 18 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
33d1h4ra2



not modelled 16.6 23 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
34c3ejbC_



not modelled 15.5 27 PDB header:oxidoreductase/lipid transport
Chain: C: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of p450bioi in complex with tetradecanoic2 acid ligated acyl carrier protein
35c3izbU_



not modelled 15.4 20 PDB header:ribosome
Chain: U: PDB Molecule:40s ribosomal protein s24;
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
36c3iz6U_



not modelled 15.4 15 PDB header:ribosome
Chain: U: PDB Molecule:40s ribosomal protein s24 (s24e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
37d1hnja2



not modelled 15.1 25 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
38d1tgoa2



not modelled 14.8 18 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
39c2hmaA_



not modelled 14.8 18 PDB header:transferase
Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)-
PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae
40c3t5sA_



not modelled 14.4 8 PDB header:immune system
Chain: A: PDB Molecule:macrophage migration inhibitory factor;
PDBTitle: structure of macrophage migration inhibitory factor from giardia2 lamblia
41d2j13a1



not modelled 14.1 29 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
42d1gyxa_



not modelled 13.2 10 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
43d1qhta2



not modelled 13.1 18 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
44d1d5aa2



not modelled 13.0 20 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
45d2iboa1



not modelled 13.0 13 Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
46d1n62b2



not modelled 12.8 18 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
47c3lvmB_



not modelled 12.6 19 PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase;
PDBTitle: crystal structure of e.coli iscs
48c1wygA_



not modelled 12.4 24 PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
49c2zkqc_



not modelled 12.2 15 PDB header:ribosomal protein/rna
Chain: C: PDB Molecule:rna expansion segment es4;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
50d2g1da1



not modelled 12.2 17 Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
51c2epiA_



not modelled 12.2 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0045 protein mj1052;
PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)
52d1v97a5



not modelled 12.0 24 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
53d1wn7a2



not modelled 11.9 18 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
54c1cmlA_



not modelled 11.5 13 PDB header:transferase
Chain: A: PDB Molecule:protein (chalcone synthase);
PDBTitle: chalcone synthase from alfalfa complexed with malonyl-coa
55c2l9fA_



not modelled 11.5 13 PDB header:transferase
Chain: A: PDB Molecule:cale8;
PDBTitle: nmr solution structure of meacp
56c2vfjA_



not modelled 11.2 31 PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor;
PDBTitle: structure of the a20 ovarian tumour (otu) domain
57d2c1ia1



not modelled 10.8 19 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
58c3nctC_



not modelled 10.7 35 PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
59d2fi0a1



not modelled 10.4 26 Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
60c3g8rA_



not modelled 10.4 25 PDB header:biosynthetic protein
Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e;
PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472
61c2fq2A_



not modelled 10.3 17 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of minor conformation of holo-acyl2 carrier protein from malaria parasite plasmodium falciparum
62c3hdoB_



not modelled 10.3 16 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
63c3ffhA_



not modelled 10.2 11 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
64d1qz9a_



not modelled 10.2 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
65d1ywxa1



not modelled 10.2 11 Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
66d1eg5a_



not modelled 10.1 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
67c1x3oA_



not modelled 10.0 26 PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of the acyl carrier protein from thermus2 thermophilus hb8
68c1ffvB_



not modelled 9.8 15 PDB header:hydrolase
Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava
69c1s5jA_



not modelled 9.7 12 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
70d1rm6a2



not modelled 9.6 21 Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
71c1vlbA_



not modelled 9.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
72d1vk8a_



not modelled 9.4 14 Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
73d1ny1a_



not modelled 9.3 28 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
74c1n62E_



not modelled 9.2 19 PDB header:oxidoreductase
Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain;
PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state
75c3dkbA_



not modelled 9.2 31 PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3;
PDBTitle: crystal structure of a20, 2.5 angstrom
76c3a2kB_



not modelled 9.2 11 PDB header:ligase/rna
Chain: B: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils complexed with trna
77d1t8ka_



not modelled 9.1 26 Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
78d1otfa_



not modelled 9.0 29 Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
79c3lkzB_



not modelled 9.0 15 PDB header:viral protein
Chain: B: PDB Molecule:non-structural protein 5;
PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase
80d2p81a1



not modelled 8.9 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
81c2op8A_



not modelled 8.8 12 PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
82c1w17A_



not modelled 8.8 28 PDB header:hydrolase
Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa;
PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase.
83c2hdyA_



not modelled 8.7 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:selenocysteine lyase;
PDBTitle: structure of human selenocysteine lyase
84c3ry0A_



not modelled 8.6 26 PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
85d1elua_



not modelled 8.6 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
86d1s6ya2



not modelled 8.5 24 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:AglA-like glucosidase
87d1yqha1



not modelled 8.4 19 Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
88d1xn9a_



not modelled 8.4 17 Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
89c3m20A_



not modelled 8.3 20 PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
90d1ub7a2



not modelled 8.3 21 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
91c2oq2B_



not modelled 8.2 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase;
PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
92d3clsc1



not modelled 8.0 17 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
93c3lmoA_



not modelled 8.0 17 PDB header:transferase
Chain: A: PDB Molecule:specialized acyl carrier protein;
PDBTitle: crystal structure of specialized acyl carrier protein2 (rpa2022) from rhodopseudomonas palustris, northeast3 structural genomics consortium target rpr324
94c3pfyA_



not modelled 7.9 31 PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 5;
PDBTitle: the catalytic domain of human otud5
95d1mzja2



not modelled 7.5 18 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
96d1r57a_



not modelled 7.5 10 Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
97c1sb3D_



not modelled 7.5 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
98c2bg5C_



not modelled 7.4 19 PDB header:transferase
Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase;
PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme2 i-domain from the thermoanaerobacter tengcongensis pep:3 sugar phosphotransferase system (pts)
99d1lc5a_



not modelled 7.3 10 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0