Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	F	I	N	I	H	V	L	I	S	H	S	P	S	C	L	N	R	D	D	M	N	M	Q	K	D	A	I	F	G	G	K	R	R	V	R	I	S	S	Q	S	L	K	R	A	M	R	K	S	G	Y	Y	A	Q	N	I	G	E
Secondary structure
SS confidence
Disorder		?	?	?																																																			?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	S	L	R	T	I	H	L	A	Q	L	R	D	V	L	R	Q	K	L	G	E	R	F	D	Q	K	I	I	D	K	T	L	A	L	L	S	G	K	S	V	D	E	A	E	K	I	S	A	D	A	V	T	P	W	V	V	G	E	I	A
Secondary structure
SS confidence
Disorder		?	?																				?	?												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	F	C	E	Q	V	A	K	A	E	A	D	N	L	D	D	K	K	L	L	K	V	L	K	E	D	I	A	A	I	R	V	N	L	Q	Q	G	V	D	I	A	L	S	G	R	M	A	T	S	G	M	M	T	E	L	G	K	V	D	G
Secondary structure
SS confidence
Disorder													?		?	?	?	?	?	?	?			?	?	?						?	?	?	?	?	?	?														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	M	S	I	A	H	A	I	T	T	H	Q	V	D	S	D	I	D	W	F	T	A	V	D	D	L	Q	E	Q	G	S	A	H	L	G	T	Q	E	F	S	S	G	V	F	Y	R	Y	A	N	I	N	L	A	Q	L	Q	E	N	L	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	A	S	R	E	Q	A	L	E	I	A	T	H	V	V	H	M	L	A	T	E	V	P	G	A	K	Q	R	T	Y	A	A	F	N	P	A	D	M	V	M	V	N	F	S	D	M	P	L	S	M	A	N	A	F	E	K	A	V	K	A
Secondary structure
SS confidence
Disorder																						?			?			?	?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	D	G	F	L	Q	P	S	I	Q	A	F	N	Q	Y	W	D	R	V	A	N	G	Y	G	L	N	G	A	A	A	Q	F	S	L	S	D	V	D	P	I	T	A	Q	V	K	Q	M	P	T	L	E	Q	L	K	S	W	V	R	N	N
Secondary structure
SS confidence
Disorder		?	?																																				?	?	?	?	?	?			?													?	?
Disorder confidence
		.	.	.
Sequence		G	E	A
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ps0 chain C Region: 213 - 357 Aligned: 126 Modelled: 145 Confidence: 58.6% Identity: 17% PDB header:rna binding protein Chain: C: PDB Molecule:crispr-associated protein, csa2; PDBTitle: the structure of the crispr-associated protein, csa2, from sulfolobus2 solfataricus Phyre2 PDB 3myf chain B Region: 229 - 258 Aligned: 29 Modelled: 30 Confidence: 51.3% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the hpt domain from the hpt sensor hybrid2 histidine kinase from shewanella to 1.80a Phyre2 PDB 3iqt chain A Region: 228 - 263 Aligned: 35 Modelled: 36 Confidence: 51.2% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:signal transduction histidine-protein kinase bara; PDBTitle: structure of the hpt domain of sensor protein bara from escherichia2 coli cft073. Phyre2 PDB 3itc chain A Region: 285 - 361 Aligned: 77 Modelled: 77 Confidence: 46.1% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol Phyre2 PDB 2ooc chain A domain 1 Region: 228 - 264 Aligned: 36 Modelled: 36 Confidence: 45.5% Identity: 17% Fold: Four-helical up-and-down bundle Superfamily: Histidine-containing phosphotransfer domain, HPT domain Family: SphA-like Phyre2 PDB 1byv chain A Region: 6 - 25 Aligned: 15 Modelled: 20 Confidence: 35.0% Identity: 33% PDB header:hormone/growth factor Chain: A: PDB Molecule:protein (calcitonin); PDBTitle: glycosylated eel calcitonin Phyre2 PDB 1i4p chain A domain 1 Region: 27 - 35 Aligned: 9 Modelled: 9 Confidence: 28.8% Identity: 33% Fold: OB-fold Superfamily: Bacterial enterotoxins Family: Superantigen toxins, N-terminal domain Phyre2 PDB 2aq2 chain B domain 1 Region: 27 - 35 Aligned: 9 Modelled: 9 Confidence: 27.0% Identity: 33% Fold: OB-fold Superfamily: Bacterial enterotoxins Family: Superantigen toxins, N-terminal domain Phyre2 PDB 2q25 chain C Region: 10 - 33 Aligned: 24 Modelled: 24 Confidence: 25.9% Identity: 8% PDB header:virus,hydrolase/rna Chain: C: PDB Molecule:protein alpha; PDBTitle: flock house virus coat protein d75n mutant Phyre2 PDB 2i5g chain B Region: 285 - 361 Aligned: 77 Modelled: 77 Confidence: 23.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal strcuture of amidohydrolase from pseudomonas2 aeruginosa Phyre2 PDB 2rag chain B Region: 285 - 361 Aligned: 76 Modelled: 77 Confidence: 23.0% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus Phyre2 PDB 1bxt chain A domain 1 Region: 27 - 35 Aligned: 9 Modelled: 9 Confidence: 22.6% Identity: 33% Fold: OB-fold Superfamily: Bacterial enterotoxins Family: Superantigen toxins, N-terminal domain Phyre2 PDB 1fnu chain A domain 1 Region: 22 - 35 Aligned: 14 Modelled: 14 Confidence: 20.7% Identity: 21% Fold: OB-fold Superfamily: Bacterial enterotoxins Family: Superantigen toxins, N-terminal domain Phyre2 PDB 2brj chain A domain 1 Region: 10 - 33 Aligned: 24 Modelled: 24 Confidence: 20.5% Identity: 17% Fold: AOC barrel-like Superfamily: Allene oxide cyclase-like Family: Allene oxide cyclase-like Phyre2 PDB 1esf chain A domain 1 Region: 27 - 35 Aligned: 9 Modelled: 9 Confidence: 19.3% Identity: 22% Fold: OB-fold Superfamily: Bacterial enterotoxins Family: Superantigen toxins, N-terminal domain Phyre2 PDB 2bbv chain C Region: 10 - 35 Aligned: 26 Modelled: 26 Confidence: 18.6% Identity: 8% Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily: Positive stranded ssRNA viruses Family: Nodaviridae-like VP Phyre2 PDB 2bmt chain A Region: 40 - 44 Aligned: 5 Modelled: 5 Confidence: 17.9% Identity: 60% Fold: Knottins (small inhibitors, toxins, lectins) Superfamily: Scorpion toxin-like Family: Short-chain scorpion toxins Phyre2 PDB 1enf chain A domain 1 Region: 27 - 35 Aligned: 9 Modelled: 9 Confidence: 17.9% Identity: 22% Fold: OB-fold Superfamily: Bacterial enterotoxins Family: Superantigen toxins, N-terminal domain Phyre2 PDB 3b40 chain A Region: 285 - 361 Aligned: 76 Modelled: 77 Confidence: 16.6% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa Phyre2 PDB 1nh8 chain A domain 2 Region: 188 - 224 Aligned: 37 Modelled: 37 Confidence: 16.0% Identity: 14% Fold: Ferredoxin-like Superfamily: GlnB-like Family: ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain Phyre2 1 c3ps0C_ 2 c3myfB_ 3 c3iqtA_ 4 c3itcA_ 5 d2ooca1 6 c1byvA_ 7 d1i4pa1 8 d2aq2b1 9 c2q25C_ 10 c2i5gB_ 11 c2ragB_ 12 d1bxta1 13 d1fnua1 14 d2brja1 15 d1esfa1 16 d2bbvc_ 17 d2bmta_ 18 d1enfa1 19 c3b40A_ 20 d1nh8a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ps0C_ 58.6 17 PDB header:rna binding protein Chain: C: PDB Molecule:crispr-associated protein, csa2; PDBTitle: the structure of the crispr-associated protein, csa2, from sulfolobus2 solfataricus 2 c3myfB_ 51.3 17 PDB header:transferase Chain: B: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the hpt domain from the hpt sensor hybrid2 histidine kinase from shewanella to 1.80a 3 c3iqtA_ 51.2 11 PDB header:transferase Chain: A: PDB Molecule:signal transduction histidine-protein kinase bara; PDBTitle: structure of the hpt domain of sensor protein bara from escherichia2 coli cft073. 4 c3itcA_ 46.1 12 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 5 d2ooca1 45.5 17 Fold:Four-helical up-and-down bundle Superfamily:Histidine-containing phosphotransfer domain, HPT domain Family:SphA-like 6 c1byvA_ 35.0 33 PDB header:hormone/growth factor Chain: A: PDB Molecule:protein (calcitonin); PDBTitle: glycosylated eel calcitonin 7 d1i4pa1 28.8 33 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 8 d2aq2b1 27.0 33 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 9 c2q25C_ 25.9 8 PDB header:virus,hydrolase/rna Chain: C: PDB Molecule:protein alpha; PDBTitle: flock house virus coat protein d75n mutant 10 c2i5gB_ 23.8 16 PDB header:hydrolase Chain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal strcuture of amidohydrolase from pseudomonas2 aeruginosa 11 c2ragB_ 23.0 13 PDB header:hydrolase Chain: B: PDB Molecule:dipeptidase; PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus 12 d1bxta1 22.6 33 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 13 d1fnua1 20.7 21 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 14 d2brja1 20.5 17 Fold:AOC barrel-like Superfamily:Allene oxide cyclase-like Family:Allene oxide cyclase-like 15 d1esfa1 19.3 22 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 16 d2bbvc_ 18.6 8 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Nodaviridae-like VP 17 d2bmta_ 17.9 60 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 18 d1enfa1 17.9 22 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 19 c3b40A_ 16.6 13 PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa 20 d1nh8a2 16.0 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 21 d1itua_ not modelled 15.6 9 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Renal dipeptidase 22 d1h3da2 not modelled 15.5 22 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 23 d1klud1 not modelled 14.8 25 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 24 c3fajA_ not modelled 14.8 22 PDB header:structural protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of the structural protein p131 of the archaeal virus2 acidianus two-tailed virus (atv) 25 d1hywa_ not modelled 14.6 17 Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW 26 c3fdgA_ not modelled 14.5 11 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19; PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19 27 d1r46a1 not modelled 14.0 10 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 28 d2bbva_ not modelled 13.7 8 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Nodaviridae-like VP 29 d1g0da1 not modelled 13.5 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 30 c3oo2B_ not modelled 12.9 37 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 31 c2ov7C_ not modelled 12.4 13 PDB header:ribosomal protein Chain: C: PDB Molecule:50s ribosomal protein l1; PDBTitle: the first domain of the ribosomal protein l1 from thermus2 thermophilus 32 c2jxzA_ not modelled 12.0 8 PDB header:hormone Chain: A: PDB Molecule:calcitonin; PDBTitle: solution conformation of a non-amyloidogenic analogue of human2 calcitonin in sodium dodecyl sulfate micelles 33 d1vjja1 not modelled 12.0 4 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 34 d2ywqa1 not modelled 11.8 14 Fold:Ribosome binding protein Y (YfiA homologue) Superfamily:Ribosome binding protein Y (YfiA homologue) Family:Ribosome binding protein Y (YfiA homologue) 35 d1chka_ not modelled 11.3 17 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Chitosanase 36 c3oo2A_ not modelled 10.8 37 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 37 d1wd3a1 not modelled 10.3 16 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Alpha-L-arabinofuranosidase B, N-terminal domain 38 d1ex0a1 not modelled 10.3 4 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 39 c2rqlA_ not modelled 10.3 21 PDB header:translation Chain: A: PDB Molecule:probable sigma-54 modulation protein; PDBTitle: solution structure of the e. coli ribosome hibernation2 promoting factor hpf 40 c3iefA_ not modelled 10.1 33 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 41 c1p4qA_ not modelled 10.0 25 PDB header:transcription/transferase Chain: A: PDB Molecule:cbp/p300-interacting transactivator 2; PDBTitle: solution structure of the cited2 transactivation domain in2 complex with the p300 ch1 domain 42 c3lu2B_ not modelled 9.9 11 PDB header:hydrolase Chain: B: PDB Molecule:lmo2462 protein; PDBTitle: structure of lmo2462, a listeria monocytogenes amidohydrolase family2 putative dipeptidase 43 d1oqja_ not modelled 9.3 23 Fold:SAND domain-like Superfamily:SAND domain-like Family:SAND domain 44 d1t56a1 not modelled 9.2 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 45 d2g9hd1 not modelled 8.8 22 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 46 c2d44A_ not modelled 8.7 16 PDB header:hydrolase Chain: A: PDB Molecule:alpha-l-arabinofuranosidase b; PDBTitle: crystal structure of arabinofuranosidase complexed with2 arabinofuranosyl-alpha-1,2-xylobiose 47 d1imua_ not modelled 8.5 11 Fold:Ribosome binding protein Y (YfiA homologue) Superfamily:Ribosome binding protein Y (YfiA homologue) Family:Ribosome binding protein Y (YfiA homologue) 48 d2q3za1 not modelled 8.4 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Transglutaminase N-terminal domain 49 d1h5pa_ not modelled 8.1 30 Fold:SAND domain-like Superfamily:SAND domain-like Family:SAND domain 50 c3tqmD_ not modelled 8.0 25 PDB header:protein binding Chain: D: PDB Molecule:ribosome-associated factor y; PDBTitle: structure of an ribosomal subunit interface protein from coxiella2 burnetii 51 d1yfna1 not modelled 7.6 23 Fold:SspB-like Superfamily:SspB-like Family:Stringent starvation protein B, SspB 52 c1y8qD_ not modelled 7.4 31 PDB header:ligase Chain: D: PDB Molecule:ubiquitin-like 2 activating enzyme e1b; PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex 53 d1ad2a_ not modelled 7.3 13 Fold:Ribosomal protein L1 Superfamily:Ribosomal protein L1 Family:Ribosomal protein L1 54 d1m06f_ not modelled 7.2 75 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Microviridae-like VP 55 c2dzlA_ not modelled 7.1 24 PDB header:structural genomics unknown function Chain: A: PDB Molecule:protein fam100b; PDBTitle: solution structure of the uba domain in human protein2 fam100b 56 d2id6a1 not modelled 7.1 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 57 c3vh1A_ not modelled 7.0 31 PDB header:metal binding protein Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: crystal structure of saccharomyces cerevisiae atg7 (1-595) 58 c1r8uA_ not modelled 6.9 25 PDB header:transcription/transcription activator Chain: A: PDB Molecule:cbp/p300-interacting transactivator 2; PDBTitle: nmr structure of cbp taz1/cited2 complex 59 d1ufna_ not modelled 6.8 23 Fold:SAND domain-like Superfamily:SAND domain-like Family:SAND domain 60 d1t07a_ not modelled 6.7 14 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 61 d2fd5a1 not modelled 6.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 62 c2w9jB_ not modelled 6.6 43 PDB header:signaling protein Chain: B: PDB Molecule:signal recognition particle subunit srp14; PDBTitle: the crystal structure of srp14 from the schizosaccharomyces2 pombe signal recognition particle 63 d1xs8a_ not modelled 6.6 29 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 64 d1scoa_ not modelled 6.4 50 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Short-chain scorpion toxins 65 d1kq1a_ not modelled 6.4 80 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 66 d1r5sa_ not modelled 6.3 42 Fold:Connexin43 Superfamily:Connexin43 Family:Connexin43 67 d2g7la1 not modelled 6.2 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 68 d2hyja1 not modelled 6.1 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain 69 d1nova_ not modelled 6.0 23 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Nodaviridae-like VP 70 c3ixrA_ not modelled 5.9 7 PDB header:oxidoreductase Chain: A: PDB Molecule:bacterioferritin comigratory protein; PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant 71 d1qusa_ not modelled 5.8 19 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 72 c3hsbB_ not modelled 5.7 80 PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer 73 c2b7fD_ not modelled 5.7 18 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:htlv protease; PDBTitle: crystal structure of human t-cell leukemia virus protease, a novel2 target for anti-cancer design 74 d1u1sa1 not modelled 5.7 80 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 75 d1novc_ not modelled 5.6 23 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Nodaviridae-like VP 76 d1hk9a_ not modelled 5.5 80 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 77 d1ou9a_ not modelled 5.5 26 Fold:SspB-like Superfamily:SspB-like Family:Stringent starvation protein B, SspB 78 c1kq1W_ not modelled 5.2 80 PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq 79 d2oi8a1 not modelled 5.2 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Tetracyclin repressor-like, N-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0